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TRANSLATIO
N
By: Dr. Sunita Sangwan
Assistant Professor
Dept of Botany
Govt. College, Bhiwani
Introduction
 The pathway of protein synthesis is called
Translation because the ‘language’ of the
nucleotide sequence on the mRNA is
translated into the language of the amino acid
sequence.
 The m RNA is translated from its 5’end to its
3’end , producing a protein synthesized from
its amino terminal end to its carboxyl terminal
end.
Components required for
Translation
 Amino acids
 Transfer RNA
 Messenger RNA
 Aminoacyl t RNA synthetase
 Functionally competent ribosomes
 Protein factors
 ATP and GTP as a source of energy
Ribosomes
 Ribosomes are large complexes of
protein and r RNA. They consist of two
subunits- one large and one small
whose relative sizes are generally
given in terms of their sedimentation
coefficients or S (Svedberg) values.
 The S values are determined by the
shape as well as by the molecular
mass, their numerical values are
strictly not additive.
 The prokaryotic 50S and 30S
ribosomal subunits together form a
ribosome with an S value of 70.
A and P sites on Ribosome
 The ribosome has two binding sites for t RNA
molecules, each of which extends over both
subunits. Together they cover the neighboring
codons. During translation ,
 The A site binds an incoming Aminoacyl t RNA as
directed by the Codon currently occupying the
site. This Codon specifies the next amino acid to
be added to the growing peptide chain.
 The P site codon is occupied by the peptidyl-t
RNA. This t RNA carries the chain of amino acids
that has already been synthesized.
 An E site is also there that is occupied by the
empty tRNA that is about to exit the ribosome
Transfer RNA
 At least one specific type of t
RNA is required per amino
acid.
 Two sites are important, one
Amino acid attachment site the
other is Anticodon site.
 Because of their ability to carry
a specific amino acid and to
recognize the codons for that
amino acid , t RNA are called
the adapter molecules.
Steps of Protein Synthesis
The process of protein synthesis is divided into 3
stages-
 Initiation
 Elongation
 Termination
 Initiation of the protein synthesis involves the
assembly of the components of the translation
system before the peptide bond formation occurs.
These components include-
 Two ribosomal subunits
 m RNA, Aminoacyl tRNA specified by the codons
in the message ,GTP and initiation factors that
facilitate the assembly of this initiation complex.
 In prokaryotes three initiation factors are known
(IF-, IF-2 and IF-3) while in eukaryotes there are
at least 9, designated as e IF, to indicate the
eukaryotic origin.
Initiation
Initiation :
1. The small ribosomal subunit bind to the initiation factor 3
(IF3)
2. (a) The small subunit/IF3 complex binds to the mRNA.
Specifically, it binds to the sequence AGGAGG, known as the
Shine-Delgarno sequence, which is found in all prokaryotic
mRNAs.
2. (b) Meanwhile, the fmet tRNA binds to Initiation Factor 2 (IF2),
which promotes binding of the tRNA to the start codon.
3. The small subunit/IF3 complex scans along the mRNA until it
encounters the start codon. The tRNA/IF2 complex also binds to the
start codon. This complex of the small ribosomal subunit, IF3, initiator
tRNA, and IF2 is called the initiation complex.
4. At this point, the large ribosomal subunit joins in. A
molecule of GTP is hydrolyzed, and the initiation factors are
released. The ribosomal complex is now ready for protein
synthesis.
5. When the ribosome is assembled, two tRNA binding sites
are created; these are designated 'P' and 'A' (P stands for
peptidyl, A stands for amino acyl). The initiator tRNA is in the
P site, and the A site will be filled by the tRNA with the
anticodon that is complementary to the codon next to the
start. (In this case, it is the tRNA that binds proline.)
6. When the second tRNA base pairs with the appropriate codon
in the mRNA, an enzyme called peptidyl transferase catalyzes
the formation of a peptide bond between the two amino acids
present (while breaking the bond between fmet and its
tRNA).This activity is intrinsic to the 23S r RNA found in the large
subunit. Since the r RNA catalyzes this process , it is referred to
as the Ribozyme
Elongation
1. At this point, the whole ribosome shifts over one codon. This
shift requires several elongation factors (not shown) and energy
from the hydrolysis of GTP. The result of the shift is that the
uncharged tRNA that was in the P site is ejected, and the tRNA
that was in the A site is now in the P site. The A site is free to
accept the tRNA molecule with the appropriate anticodon for the
2. The next tRNA base pairs with the next codon, and peptidyl
transferase catalyzes the formation of a peptide bond between the
new amino acid and the growing peptide chain.
3. Once again, the ribosome shifts over, so that the uncharged
tRNA is expelled, and the tRNA with the peptide chain occupies
the P site. (This is why this site is called the 'peptidyl' site - after
the shift, it contains the tRNA with the growing peptide chain. The
other site will accept a tRNA
with an amino acid, hence the name 'aminoacyl' site) .
 The process of shifting and peptide bond
formation continues over and over until a
termination codon is encountered.
 The elongation process is fairly rapid, with
prokaryotic ribosomes able to add 15 amino acids
to the growing polypeptide every second.
 The process is also relatively error-free. Only one
mistake is made every 10,000 amino acids. For
large proteins of 1000 amino acids, that would
mean one wrong amino acid in every 10
Termination
1. When a termination codon enters the A site,
translation halts. This is because there is no tRNA
with an anti codon that is complementary to any of
the stop codons.
2. The release factor causes the translation complex to fall apart,
and cleaves the polypeptide from the final tRNA. The polypeptide
product is now free to function in the cell. The mRNA molecule is
now available to be
translated again.
Termination continue…..
 Very often, more than one ribosome will translate a
single mRNA at the same time. One ribosome will
initiate translation, and after it moves down the mRNA a
bit, another ribosome will initiate, then another, and so
on.
 The structure consisting of multiple ribosomes
translating a single mRNA molecule is called a polysome
 Eventually, the mRNA is degraded, and translation of
that particular message will cease.
Termination continue…..
Eukaryotic Translation
Eukaryotic translation is very similar overall to prokaryotic
translation. There are a few notable differences, These
include the followings:
 Eukaryotic mRNAs do not contain a Shine-Delgarno
sequence.
 Instead, ribosomal subunits recognize and bind to the 5'
cap of eukaryotic mRNAs. In other words, the 5' cap
takes the place of the Shine-Delgarno sequence.
 Eukaryotes do not use formyl methionine as the first
amino acid in every polypeptide; ordinary methionine is
used. Eukaryotes do have a specific initiator tRNA,
however.
 Eukaryotic translation involves many more protein factors
than prokaryotic translation (For example, eukaryotic
Translation summary
Translation

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Translation

  • 1. TRANSLATIO N By: Dr. Sunita Sangwan Assistant Professor Dept of Botany Govt. College, Bhiwani
  • 2. Introduction  The pathway of protein synthesis is called Translation because the ‘language’ of the nucleotide sequence on the mRNA is translated into the language of the amino acid sequence.  The m RNA is translated from its 5’end to its 3’end , producing a protein synthesized from its amino terminal end to its carboxyl terminal end.
  • 3. Components required for Translation  Amino acids  Transfer RNA  Messenger RNA  Aminoacyl t RNA synthetase  Functionally competent ribosomes  Protein factors  ATP and GTP as a source of energy
  • 4. Ribosomes  Ribosomes are large complexes of protein and r RNA. They consist of two subunits- one large and one small whose relative sizes are generally given in terms of their sedimentation coefficients or S (Svedberg) values.  The S values are determined by the shape as well as by the molecular mass, their numerical values are strictly not additive.  The prokaryotic 50S and 30S ribosomal subunits together form a ribosome with an S value of 70.
  • 5. A and P sites on Ribosome  The ribosome has two binding sites for t RNA molecules, each of which extends over both subunits. Together they cover the neighboring codons. During translation ,  The A site binds an incoming Aminoacyl t RNA as directed by the Codon currently occupying the site. This Codon specifies the next amino acid to be added to the growing peptide chain.  The P site codon is occupied by the peptidyl-t RNA. This t RNA carries the chain of amino acids that has already been synthesized.  An E site is also there that is occupied by the empty tRNA that is about to exit the ribosome
  • 6.
  • 7. Transfer RNA  At least one specific type of t RNA is required per amino acid.  Two sites are important, one Amino acid attachment site the other is Anticodon site.  Because of their ability to carry a specific amino acid and to recognize the codons for that amino acid , t RNA are called the adapter molecules.
  • 8. Steps of Protein Synthesis The process of protein synthesis is divided into 3 stages-  Initiation  Elongation  Termination
  • 9.  Initiation of the protein synthesis involves the assembly of the components of the translation system before the peptide bond formation occurs. These components include-  Two ribosomal subunits  m RNA, Aminoacyl tRNA specified by the codons in the message ,GTP and initiation factors that facilitate the assembly of this initiation complex.  In prokaryotes three initiation factors are known (IF-, IF-2 and IF-3) while in eukaryotes there are at least 9, designated as e IF, to indicate the eukaryotic origin. Initiation
  • 10. Initiation : 1. The small ribosomal subunit bind to the initiation factor 3 (IF3) 2. (a) The small subunit/IF3 complex binds to the mRNA. Specifically, it binds to the sequence AGGAGG, known as the Shine-Delgarno sequence, which is found in all prokaryotic mRNAs.
  • 11. 2. (b) Meanwhile, the fmet tRNA binds to Initiation Factor 2 (IF2), which promotes binding of the tRNA to the start codon. 3. The small subunit/IF3 complex scans along the mRNA until it encounters the start codon. The tRNA/IF2 complex also binds to the start codon. This complex of the small ribosomal subunit, IF3, initiator tRNA, and IF2 is called the initiation complex.
  • 12. 4. At this point, the large ribosomal subunit joins in. A molecule of GTP is hydrolyzed, and the initiation factors are released. The ribosomal complex is now ready for protein synthesis.
  • 13. 5. When the ribosome is assembled, two tRNA binding sites are created; these are designated 'P' and 'A' (P stands for peptidyl, A stands for amino acyl). The initiator tRNA is in the P site, and the A site will be filled by the tRNA with the anticodon that is complementary to the codon next to the start. (In this case, it is the tRNA that binds proline.)
  • 14. 6. When the second tRNA base pairs with the appropriate codon in the mRNA, an enzyme called peptidyl transferase catalyzes the formation of a peptide bond between the two amino acids present (while breaking the bond between fmet and its tRNA).This activity is intrinsic to the 23S r RNA found in the large subunit. Since the r RNA catalyzes this process , it is referred to as the Ribozyme
  • 16. 1. At this point, the whole ribosome shifts over one codon. This shift requires several elongation factors (not shown) and energy from the hydrolysis of GTP. The result of the shift is that the uncharged tRNA that was in the P site is ejected, and the tRNA that was in the A site is now in the P site. The A site is free to accept the tRNA molecule with the appropriate anticodon for the
  • 17. 2. The next tRNA base pairs with the next codon, and peptidyl transferase catalyzes the formation of a peptide bond between the new amino acid and the growing peptide chain. 3. Once again, the ribosome shifts over, so that the uncharged tRNA is expelled, and the tRNA with the peptide chain occupies the P site. (This is why this site is called the 'peptidyl' site - after the shift, it contains the tRNA with the growing peptide chain. The other site will accept a tRNA with an amino acid, hence the name 'aminoacyl' site) .
  • 18.  The process of shifting and peptide bond formation continues over and over until a termination codon is encountered.  The elongation process is fairly rapid, with prokaryotic ribosomes able to add 15 amino acids to the growing polypeptide every second.  The process is also relatively error-free. Only one mistake is made every 10,000 amino acids. For large proteins of 1000 amino acids, that would mean one wrong amino acid in every 10
  • 20. 1. When a termination codon enters the A site, translation halts. This is because there is no tRNA with an anti codon that is complementary to any of the stop codons.
  • 21. 2. The release factor causes the translation complex to fall apart, and cleaves the polypeptide from the final tRNA. The polypeptide product is now free to function in the cell. The mRNA molecule is now available to be translated again. Termination continue…..
  • 22.  Very often, more than one ribosome will translate a single mRNA at the same time. One ribosome will initiate translation, and after it moves down the mRNA a bit, another ribosome will initiate, then another, and so on.  The structure consisting of multiple ribosomes translating a single mRNA molecule is called a polysome  Eventually, the mRNA is degraded, and translation of that particular message will cease. Termination continue…..
  • 23. Eukaryotic Translation Eukaryotic translation is very similar overall to prokaryotic translation. There are a few notable differences, These include the followings:  Eukaryotic mRNAs do not contain a Shine-Delgarno sequence.  Instead, ribosomal subunits recognize and bind to the 5' cap of eukaryotic mRNAs. In other words, the 5' cap takes the place of the Shine-Delgarno sequence.  Eukaryotes do not use formyl methionine as the first amino acid in every polypeptide; ordinary methionine is used. Eukaryotes do have a specific initiator tRNA, however.  Eukaryotic translation involves many more protein factors than prokaryotic translation (For example, eukaryotic