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Open Science

@PeterKraker
Opencamp Graz #ocg12




                gefördert durch das Kompetenzzentrenprogramm
Reference


Kraker P., Leony D., Reinhardt, W., Beham G.: “The case for
  an open science in technology enhanced learning”, Int.
  J. Technology Enhanced Learning 3(6), 643-654.




Postprint available from: http://is.gd/open_science
Blogpost with background information:
                                                              2
   http://science20.wordpress.com
                                                              © Know-Center 2010
Problems in Science


Information overload
    Exponential growth (Price 1961)
    Barnaby Rich Effect: “It„s always the other
    author(s) who publishes too much and
    “pollutes“, “floods”, “eutroficates” the literature,
    never me” (Braun and Zsindelay 1985)
Exaggerated and inflated claims (Young et al.)
Reproducibility of results
    Datasets and source code not available
    Methodological information is missing
    (Knorr-Cetina 1981)

                                                           Price, 1961          3
                                                           extended by Leydesdorff (2008)
                                                                                © Know-Center 2010
Problems in Science


Simultaneous/repeated discoveries
Formation of “invisible colleges”
   Technology Enhanced Learning
      Disjoint scientific communities (Gillet et al. 2009)
      Low-cross citation rate
      Low cross-authorship rate (Kirby et al. 2005, Maurer
       and Khan 2010)
      Multi-disciplinarity instead of inter-disciplinarity


                 Can an Open Science help?
                                                              4

                                                              © Know-Center 2010
What is Open Science?


“Open Science means opening up the research
process by making all of its outcomes, and the
way in which these outcomes were achieved,
publicly available on the World Wide Web”



           Open Data    Open Source

                    Open
                   Science
                            Open
          Open Access
                         Methodology


                                                 5

                                                 © Know-Center 2010
Open Access


Budapest Open Access Initiative
    Free availability of publications on the Internet
    Rights of the author: integrity of the work, acknowlegement
E-Prints: Unpublished, Pre-Print, Post-Print
    arXiv.org, TeLearn Archive
Journals
    Green Road
    Gold Road
Directory of Open Access Journals (DOAJ)

                                                                  6

                                                                  © Know-Center 2010
Open Data


Publishing the data sets collected in the research process
  on the World Wide Web, without restricting their use
  (Murray-Rust 2008)
Important for
    Reproducibility
    Reuse of data
    Aggregation of data
GenBank (storing DNA data sequences) – Bermuda           http://lod-cloud.net     /
  principles
DataShop: educational data resources
dataTEL Initiative
                                                                 7

                                                                 © Know-Center 2010
Open Source


Open Source means that software is made available under
  a license that permits anyone to use, change, improve,
  or derive from existing source code, and sometimes
  even to distribute the software (Feller and Fitzgerald
  2002)
Advantages
    Reuse of prototypes
    Easier transfer into practice
    Larger pool of developers
The R Project for Statistical Computing (http://r-project.org)
moodle (http://moodle.org)
                                                                 8

                                                                 © Know-Center 2010
Open Methodology


Papers do not contain all the methodological information
  needed to reproduce a certain research result (Knorr-
  Cetina 1981)
   Decontextualization, Typification
   Procedural remarks are missing
Open Methodology complements paper with an explicit and
  detailed procedure on how to analyse the data collected
  and to generate the obtained results
   E.g. experimental setups, scripts written for computer
   simulations, and aggregation rules in qualitative data
   analysis
myExperiment
The Stanford Exploration Project (SEP): Reproducing
  numerical results with makefiles                          9

                                                            © Know-Center 2010
An Open Science for TEL


Connect the disjoint communities in TEL
   Exchange of research findings
   Discussion on implementations
   Discussion of approaches to collect and
   analyse data
Enables reproducibility of research
                                                       http://jtelsummerschool.eu      /
   Increases value of research
   Enables researchers to build on each other‟s work
   Efficiency: reduces redundant design and development
   Comparability: which approach fits best, effectiveness
                                                                      10

                                                                      © Know-Center 2010
An Open Science for TEL


Benefits Stakeholders (e.g. teachers)
   Research prototypes become more widely available
   Can be used in practice much earlier
   Greater impact on practice and more visibility for TEL
   research.
   Fosters Open Innovation
      moodle (originally PhD research project)




                                                            11

                                                            © Know-Center 2010
Issues


Legal and technical issues
    Guidelines, standardized formats, appropriate licenses, and
    proper citation methods.
Social issues
    Issues among computer scientists - data, code (Stodden 2009)
      The time it takes to clean up and document for release
      The possibility that code/data may be used without citation
      Legal barriers, such as copyright
      Potential loss of future publications
      Competitors may get an advantage
      Privacy constraints
    Reputation                                                       12

                                                                     © Know-Center 2010
Recommendations for implementing an Open
   Science

Open Science is a community effort
Reproducibility and comparability as standard reviewing
  criteria
Journals and conferences: making the submission of
  source code, data, and methodological descriptions
  together with the paper mandatory
    Bermuda principles: DNA sequences should be rapidly
    released into the public domain (GenBank)
    Conferences and journals themselves should in turn commit
    to making the papers openly accessible
Technical problems: review existing initiatives (DataCite;
  Stodden 2010)
                                                                13
Standing problem: awareness
                                                                © Know-Center 2010
More to come


Barcamp Graz: May 11-13, 2012
   Politcamp, Wissenscamp, Designcamp, iCamp, Geocamp
   http://barcamp-graz.at


Special Track Science 2.0 (#STS) at i-KNOW 2012: Sep 5,
  2012
   Open Science
   Recommendation
   Analysis of Science
   Change in scientific practice
 http://i-know.tugraz.at/i-science/science-2-0            14

                                                          © Know-Center 2010
References

Brase, J. 2009. DataCite - A global registration agency for research data in Fourth International Conference on
     Cooperation and Promotion of Information Resources in Science and Technology. IEEE, pp. 257–261.
Drachsler, H. et al. 2010. Issues and considerations regarding sharable data sets for recommender systems in
     technology enhanced learning. Procedia Computer Science, 1(2), pp.2849-2858.
Feller, J. & Fitzgerald, B., 2002. Understanding Open Source Software Development, Addison-Wesley.
Gillet, D., Scott, P. & Sutherland, R. 2009. STELLAR European research network of excellence in technology
       enhanced learning in International Conference on Engineering Education & Research
Kirby, J., Hoadley, C. & Carr-Chellman, A. 2005. Instructional Systems Design and the Learning Sciences: A Citation
      Analysis. Educational Technology Research and Development, 53(1), pp.37-48.
Knorr-Cetina, K., 1981. The Manufacture of Knowledge: An Essay on the Constructivist and Contextual Nature of
     Science, Pergamon Press
Maurer, H. & Khan, M.S. 2010. Research trends in the field of e-learning from 2003 to 2008: A scientometric and
    content analysis for selected journals and conferences using visualization. Interactive Technology and Smart
    Education, 7(1), pp.5-18.
Murray-Rust, P., 2008. Open Data In Science. Serials Review, 34(1), pp.52-64.
Price, D.J.D.S. 1963. Little science, big science. Columbia Univ. Press.
Reinhardt, W., Meier, C., Drachsler, H. & Sloep, P, 2011. Analyzing 5 years of EC-TEL proceedings. In C. D. Kloos,
     D. Gillet, R. M. C. Garcìa, F. Wild, & M. Wolpers, eds. Towards Ubiquitous Learning. Proceedings of the 6th
     European Conference on Technology Enhanced Learning, pp 531–536. Springer Berlin/Heidelberg.
Stodden, V., 2009. The Legal Framework for Reproducible Scientific Research: Licensing and Copyright. Computing
     in Science & Engineering, 11(1), pp.35-40.
Stodden, V., 2010. The Scientific Method in Practice: Reproducibility in the Computational Sciences. Sloan School
     Working Paper, 4773-10, MIT. Available at: http://papers.ssrn.com/sol3/papers.cfm?abstract_id=1550193
     [Accessed April 10, 2011].
Young, N.S., Ioannidis, J.P. a & Al-Ubaydli, O. 2008. Why current publication practices may distort science. PLoS
    medicine, 5(10), p.e201.
                                                                                                                      15

                                                                                                                      © Know-Center 2010
www.know-center.at




Thank you!

@PeterKraker
pkraker@know-center.at
http://science20.wordpress.com
http://mendeley.com/profiles/peter-kraker-2




                   gefördert durch das Kompetenzzentrenprogramm

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Open science at Opencamp

  • 1. www.know-center.at Open Science @PeterKraker Opencamp Graz #ocg12 gefördert durch das Kompetenzzentrenprogramm
  • 2. Reference Kraker P., Leony D., Reinhardt, W., Beham G.: “The case for an open science in technology enhanced learning”, Int. J. Technology Enhanced Learning 3(6), 643-654. Postprint available from: http://is.gd/open_science Blogpost with background information: 2 http://science20.wordpress.com © Know-Center 2010
  • 3. Problems in Science Information overload Exponential growth (Price 1961) Barnaby Rich Effect: “It„s always the other author(s) who publishes too much and “pollutes“, “floods”, “eutroficates” the literature, never me” (Braun and Zsindelay 1985) Exaggerated and inflated claims (Young et al.) Reproducibility of results Datasets and source code not available Methodological information is missing (Knorr-Cetina 1981) Price, 1961 3 extended by Leydesdorff (2008) © Know-Center 2010
  • 4. Problems in Science Simultaneous/repeated discoveries Formation of “invisible colleges” Technology Enhanced Learning  Disjoint scientific communities (Gillet et al. 2009)  Low-cross citation rate  Low cross-authorship rate (Kirby et al. 2005, Maurer and Khan 2010)  Multi-disciplinarity instead of inter-disciplinarity Can an Open Science help? 4 © Know-Center 2010
  • 5. What is Open Science? “Open Science means opening up the research process by making all of its outcomes, and the way in which these outcomes were achieved, publicly available on the World Wide Web” Open Data Open Source Open Science Open Open Access Methodology 5 © Know-Center 2010
  • 6. Open Access Budapest Open Access Initiative Free availability of publications on the Internet Rights of the author: integrity of the work, acknowlegement E-Prints: Unpublished, Pre-Print, Post-Print arXiv.org, TeLearn Archive Journals Green Road Gold Road Directory of Open Access Journals (DOAJ) 6 © Know-Center 2010
  • 7. Open Data Publishing the data sets collected in the research process on the World Wide Web, without restricting their use (Murray-Rust 2008) Important for Reproducibility Reuse of data Aggregation of data GenBank (storing DNA data sequences) – Bermuda http://lod-cloud.net / principles DataShop: educational data resources dataTEL Initiative 7 © Know-Center 2010
  • 8. Open Source Open Source means that software is made available under a license that permits anyone to use, change, improve, or derive from existing source code, and sometimes even to distribute the software (Feller and Fitzgerald 2002) Advantages Reuse of prototypes Easier transfer into practice Larger pool of developers The R Project for Statistical Computing (http://r-project.org) moodle (http://moodle.org) 8 © Know-Center 2010
  • 9. Open Methodology Papers do not contain all the methodological information needed to reproduce a certain research result (Knorr- Cetina 1981) Decontextualization, Typification Procedural remarks are missing Open Methodology complements paper with an explicit and detailed procedure on how to analyse the data collected and to generate the obtained results E.g. experimental setups, scripts written for computer simulations, and aggregation rules in qualitative data analysis myExperiment The Stanford Exploration Project (SEP): Reproducing numerical results with makefiles 9 © Know-Center 2010
  • 10. An Open Science for TEL Connect the disjoint communities in TEL Exchange of research findings Discussion on implementations Discussion of approaches to collect and analyse data Enables reproducibility of research http://jtelsummerschool.eu / Increases value of research Enables researchers to build on each other‟s work Efficiency: reduces redundant design and development Comparability: which approach fits best, effectiveness 10 © Know-Center 2010
  • 11. An Open Science for TEL Benefits Stakeholders (e.g. teachers) Research prototypes become more widely available Can be used in practice much earlier Greater impact on practice and more visibility for TEL research. Fosters Open Innovation  moodle (originally PhD research project) 11 © Know-Center 2010
  • 12. Issues Legal and technical issues Guidelines, standardized formats, appropriate licenses, and proper citation methods. Social issues Issues among computer scientists - data, code (Stodden 2009)  The time it takes to clean up and document for release  The possibility that code/data may be used without citation  Legal barriers, such as copyright  Potential loss of future publications  Competitors may get an advantage  Privacy constraints Reputation 12 © Know-Center 2010
  • 13. Recommendations for implementing an Open Science Open Science is a community effort Reproducibility and comparability as standard reviewing criteria Journals and conferences: making the submission of source code, data, and methodological descriptions together with the paper mandatory Bermuda principles: DNA sequences should be rapidly released into the public domain (GenBank) Conferences and journals themselves should in turn commit to making the papers openly accessible Technical problems: review existing initiatives (DataCite; Stodden 2010) 13 Standing problem: awareness © Know-Center 2010
  • 14. More to come Barcamp Graz: May 11-13, 2012 Politcamp, Wissenscamp, Designcamp, iCamp, Geocamp http://barcamp-graz.at Special Track Science 2.0 (#STS) at i-KNOW 2012: Sep 5, 2012 Open Science Recommendation Analysis of Science Change in scientific practice http://i-know.tugraz.at/i-science/science-2-0 14 © Know-Center 2010
  • 15. References Brase, J. 2009. DataCite - A global registration agency for research data in Fourth International Conference on Cooperation and Promotion of Information Resources in Science and Technology. IEEE, pp. 257–261. Drachsler, H. et al. 2010. Issues and considerations regarding sharable data sets for recommender systems in technology enhanced learning. Procedia Computer Science, 1(2), pp.2849-2858. Feller, J. & Fitzgerald, B., 2002. Understanding Open Source Software Development, Addison-Wesley. Gillet, D., Scott, P. & Sutherland, R. 2009. STELLAR European research network of excellence in technology enhanced learning in International Conference on Engineering Education & Research Kirby, J., Hoadley, C. & Carr-Chellman, A. 2005. Instructional Systems Design and the Learning Sciences: A Citation Analysis. Educational Technology Research and Development, 53(1), pp.37-48. Knorr-Cetina, K., 1981. The Manufacture of Knowledge: An Essay on the Constructivist and Contextual Nature of Science, Pergamon Press Maurer, H. & Khan, M.S. 2010. Research trends in the field of e-learning from 2003 to 2008: A scientometric and content analysis for selected journals and conferences using visualization. Interactive Technology and Smart Education, 7(1), pp.5-18. Murray-Rust, P., 2008. Open Data In Science. Serials Review, 34(1), pp.52-64. Price, D.J.D.S. 1963. Little science, big science. Columbia Univ. Press. Reinhardt, W., Meier, C., Drachsler, H. & Sloep, P, 2011. Analyzing 5 years of EC-TEL proceedings. In C. D. Kloos, D. Gillet, R. M. C. Garcìa, F. Wild, & M. Wolpers, eds. Towards Ubiquitous Learning. Proceedings of the 6th European Conference on Technology Enhanced Learning, pp 531–536. Springer Berlin/Heidelberg. Stodden, V., 2009. The Legal Framework for Reproducible Scientific Research: Licensing and Copyright. Computing in Science & Engineering, 11(1), pp.35-40. Stodden, V., 2010. The Scientific Method in Practice: Reproducibility in the Computational Sciences. Sloan School Working Paper, 4773-10, MIT. Available at: http://papers.ssrn.com/sol3/papers.cfm?abstract_id=1550193 [Accessed April 10, 2011]. Young, N.S., Ioannidis, J.P. a & Al-Ubaydli, O. 2008. Why current publication practices may distort science. PLoS medicine, 5(10), p.e201. 15 © Know-Center 2010