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Using GEOBIA to assess crown diameter
            classes of Acacia tortilis in Bou-Hedma, Tunisia




                 Kevin DELAPLACE a, Frieke VAN COILLIE a, Robert DE WULF a,
                 Donald GABRIELS b, Koen DE SMET c, Mohammed OUESSAR d,
                          Azaiez OULED BELGACEM d, Houcine TAAMALLAH d



Ghent, September 24, 2010
EARSeL Joint SIG Workshop: Urban - 3D - Radar - Thermal Remote Sensing and Developing Countries
Partners
   a GhentUniversity, Belgium
    Laboratory of Forest Management and Spatial Information Techniques
    (kevin.delaplace, frieke.vancoillie, robert.dewulf)@ugent.be
   b GhentUniversity, Belgium
    Department of Soil Management and Soil Care
    donald.gabriels@ugent.be
   c Flemish
            Government, Belgium
    Environment, Nature and Energy Department
    koen.desmet@lne.vlaanderen.be
   d Institut   des Régions Arides de Médenine, Tunisia
    med.ouessar@ira.agrinet.tn, (Azaiez.ouledbelgacem, taamallah.houcine)@ira.rnrt.tn
Context

 Acacia raddiana forest steppe in Bou-Hedma national park, Tunisia
    A. raddiana persists on edge of desert  keystone species pre-Saharan Tunisia zone
    Past: Bou-Hedma no attention concerning biodiversity, protection and use
    Result: desertification caused by excessive livestock grazing, partial land
     clearance, ploughing  soil erosion
    1955: only few old trees left
    Sixties: first actions to combat desertification/erosion
        700 ha fenced
        Tree nursery                      Gradual restoration of vegetation
        Two Integral Protection Zones
    1977: part of the network of Biosphere Reserves of UNESCO
    1985: regeneration actions

Context – Aim – Study area – Imagery- Method – Results - Conclusions
Context

    Important activity in Bou-Hedma: restoration of original woodland
     combating desertification
      afforestation and reforestation
    Cooperation between Flemish Government & Direction Générale des
     Forêts of Tunisia
      reforestation 50,000 ha with A. raddiana in historical geographic range
    Part of larger project Kyoto Clean Development Mechanism (CDM)
      scientific follow up of plantations, ecological and socio-economical consequences




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Context

 Restoration of A. raddiana  induce local climate change
    Consequences likely to occur
        Change of soil temperature
        Formation of humus by partial leaf shedding in summer
        Influence on the cloud formation process, inducing precipitation
        Interception of water by tree leaves and trunks, influencing erosion processes
    However, scientific data remain scarce
        Some phenological and ecophysiological studies
        Little knowledge of composition, structure and by extension dynamics  useful to
         test efficiency of different management scenarios



Context – Aim – Study area – Imagery- Method – Results - Conclusions
Aim

 In order to evaluate future trends  assess current situation
  Aim
        RS-based monotemporal assessment of amount of A. raddiana
        Estimation of diameter and height class distributions of A. raddiana


    Research questions
        What is the most appropriate (semi-)automated image processing procedure?
        Are we able to establish models to estimate individual tree attributes?
        Are we able to provide an estimate of the structure of the Acacia raddiana forest
         steppe at Bou-Hedma National Park?



Context – Aim – Study area – Imagery- Method – Results - Conclusions
Study area

    Location
        34°24’ N to 34°32’ N
        09°23’ E to 09°41’ E




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Study area

    Location
        34°24’ N to 34°32’ N
        09°23’ E to 09°41’ E
    Altitude
        90 m - 814 m above sea level




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Study area

    Location
        34°24’ N to 34°32’ N
        09°23’ E to 09°41’ E
    Altitude
        90 m - 814 m above sea level
    Climate: Mediterranean arid with
     temperate winters
        average annual rainfall 180 mm
        average temp 17.2°C
        mean max temp 38°C
        mean min temp 3.9°C


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Field survey
    Field conditions A. raddiana
        Two spatial configurations
            Plantations
            ‘Natural’
        Individuals & tree groups
        Presence of Eucalyptus sp.

    > 400 A. raddiana trees randomly sampled
        Tree positions (UTM WGS84)
        Tree bole diameter (basal and breast height)
        Total tree height
        Crown diameter (two perpendicular directions)

Context – Aim – Study area – Imagery- Method – Results - Conclusions
Imagery
    GeoEye-1 scene
      Spatial resolution: 0.5 m PAN, 2 m MS

      Radiometric resolution: 11 bits per pixel

      Spectral resolution: PAN, Blue, Green, Red, NIR

      Acquisition date:
           Optimum: discrimination trees, soil and vegetation largest
           Dry season: no lush vegetation, low cloud cover, maximum leaf development
           1st of August 2009 at 10:18 GMT




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Imagery
    GeoEye-1 scene
      Spatial resolution: 0.5 m PAN, 2 m MS

      Radiometric resolution: 11 bits per pixel

      Spectral resolution: PAN, Blue, Green, Red, NIR

      Acquisition date: 1st of August 2009 at 10:18 GMT

      Cloud cover: 0%

      Preprocessing:

           Geometric correction by GeoEye Inc.
           Coordinate system: UTM (WGS 84)



Context – Aim – Study area – Imagery- Method – Results - Conclusions
Imagery




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology                                                                                 GeoEye-1
                                                                                                MS bands
 Object-based approach
                                                            Image Objects

                               Multi-resolution                                              Object feature
      GeoEye-1
                               / contrast-split                                             calculation / NN
      PAN band                                                     0
                               segmentation                                                  classification


Measured tree attributes         Input and reference data per reference object
  per reference object                                                                        Acacia objects
                                       Object Features   Crown diameter    Tree height
   Crown diameter          Segment 1   f1, f2, ………f200       5.2              2.5
     Tree height           Segment 2   f1, f2, ………f200       6.3              3.2
         …                    …..
                           Segment i   f1, f2, ………f200       4.1              2.1



                                                                       Estimated tree attributes per Acacia object
                                                                                                   Small CD/TH/…
                                             Regression
                    Accuracy
                                              models
                                                                                                  Large CD/TH/…


  Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                                                Image Objects

                         Multi-resolution
     GeoEye-1
                         / contrast-split
     PAN band                                       0
                         segmentation


      Multi-resolution segmentation (eCognition Developer 8):
       Parameter       Value
       Scale             40
       Shape             0.2
       Compct            0.5




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                                                 Image Objects

                              Multi-resolution
     GeoEye-1
                              / contrast-split
     PAN band                                       0
                              segmentation


      Contrast-split segmentation (eCognition Developer 8):
        Parameter                       Value
        Contrast mode          Edge difference
        Min rel area dark                  0.1
        Min rel area bright                0.1
        Min contrast                        0
        Min object size                    10




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology                                         GeoEye-1
                                                     PAN & MS
                                                       bands


                 Image Objects                                       Acacia objects
                                                   Object feature
                                                  calculation / NN
                    0                              classification




 Type               Feature (200)
 Customized         FDI (NIR-(R-B)), SAVI, NDVI
 Layer values       Mean, Min, Max, Border contrast, Contrast
                    to neighbour pixels, Edge contrast of
                    neighbour pixels, StdDev to neighbour
                    pixels, Circular mean
 Geometry           Area, Assymetry, Density, Compactness
 Texture after      Homogeneity, Mean, Correlation, Ang 2nd
 Haralick           moment, Entropy




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology                                      GeoEye-1
                                                  PAN & MS
                                                    bands


           Image Objects                                              Acacia objects
                                                Object feature
                                               calculation / NN
                0                               classification


                                                           KIA=0.96




            A. raddiana sp.   Eucalyptus sp.        Soil


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology                                     GeoEye-1
                                                   object features



           Measured tree attributes         Input and reference data per reference object
             per reference object
                                                    Object Features   Crown diameter     Tree height
               Crown diameter          Segment 1    f1, f2, ………f200       5.2               2.5
                 Tree height           Segment 2    f1, f2, ………f200       6.3               3.2
                     …                    …..
                                       Segment i    f1, f2, ………f200       4.1               2.1


Measured Acacia’s: train & test sets



                                                      Regression                    Correlation analysis
                            Accuracy
                                                       models                Tree attribute        Object feature
                                                                             Crown diameter                 Area
                                                                             Tree height                    Area
                                                                             Bole diameter                  Area

                                                                  Object feature                   Object feature
                                                                  Area                 GLCM Entropy Layer 4 (90°)


  Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                        Regression
    Accuracy
                         models




Crown diameter estimation




                                     R² = 0.64
                                     RMSE = 1.67 m
                                     MAPE = 21.6 %


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                        Regression
    Accuracy
                         models




Crown diameter estimation




                                     R² = 0.96
                                     RMSE = 14.7 pixels
                                     MAPE = 13.0 %


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                        Regression
    Accuracy
                         models




Crown diameter estimation




                                     R² = 0.58
                                     RMSE = 1.61 m
                                     MAPE = 22.0 %


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
                              Regression
    Accuracy
                               models




Crown diameter estimation
                                   60                           Measured crown diameter (field data)

                                   50                           Crown diameter derived from area (number of pixels)

                                   40
                       Frequency




                                                                Crown diameter derived from GLCM Entropy Layer 4
                                                                (90°)
                                   30

                                   20

                                   10

                                    0
                                        [0,2]   ]2,4]   ]4,6]   ]6,8]   ]8,10]   ]10,12] ]12,14] ]14,16]
                                                          Crown Diameter Classes (m)


Context – Aim – Study area – Imagery- Method – Results - Conclusions
Methodology
Acacia objects                            Estimated tree attributes per Acacia object
                                                                      Small CD/TH/…
                         Regression
                          models
                                                                     Large CD/TH/…




characterising forest structure (arrangement of diameters), height and density




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Results
Acacia objects                           Estimated tree attributes per Acacia object
                                                                     Small CD/TH/…
                        Regression
                         models
                                                                    Large CD/TH/…

Structure (Crown diameter)




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Results
Acacia objects                                 Estimated tree attributes per Acacia object
                                                                           Small CD/TH/…
                            Regression
                             models
                                                                                Large CD/TH/…

Density
                                                            Characteristics original forest steppe, 1900
                                                                      1925 (Zaafouri et al, 1996)
  Kernel of 1 ha (200×200 pixels, 0.5 m resolution)         Tree attribute                          Value
  Total of 2596 non-overlapping kernels                     Total tree height          9 - 10 m (max 10 m)

  Excluding border effect                                   Trunk height                   3 – 4 m at most

      mean density = 8.4 trees/ha                          Mean basal diameter                15 – 20 cm
                                                                                                 2.3 – 3 m
      max density = 95 trees/ha (plantations)              BD of biggest trees
                                                            Density                        4 – 25 trees/ha




Context – Aim – Study area – Imagery- Method – Results - Conclusions
Conclusions

 Answer to RQ
         Object-based segmentation/classification approach  suitably addressed
          estimation of amount of A. raddiana
         Established models  adequately estimate of individual tree attributes
         Estimation of structure, height and density Acacia raddiana forest steppe at
          Bou-Hedma National Park

 Future activities
         Fine-tuning of segmentation / classification steps
         Thorough validation
         Multitemporal assessment  inclusion of phenological information  optimal
          image acquisition time to estimate amount of Acacia’s and their attributes


Context – Aim – Study area – Imagery- Method – Results - Conclusions
THANK YOU FOR YOUR ATTENTION




                         (kevin.delaplace, frieke.vancoillie, robert.dewulf)@ugent.be

                                 Laboratory of Forest Management and Spatial Information
                                                    Techniques, Ghent University, Belgium
                                                             http://dfwm.ugent.be/forman


Ghent, September 24, 2010
EARSeL Joint SIG Workshop: Urban - 3D - Radar - Thermal Remote Sensing and Developing Countries

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Using GEOBIA to assess crown diameter classes of Acacia tortilis in Bou-Hedma, Tunisia

  • 1. Using GEOBIA to assess crown diameter classes of Acacia tortilis in Bou-Hedma, Tunisia Kevin DELAPLACE a, Frieke VAN COILLIE a, Robert DE WULF a, Donald GABRIELS b, Koen DE SMET c, Mohammed OUESSAR d, Azaiez OULED BELGACEM d, Houcine TAAMALLAH d Ghent, September 24, 2010 EARSeL Joint SIG Workshop: Urban - 3D - Radar - Thermal Remote Sensing and Developing Countries
  • 2. Partners  a GhentUniversity, Belgium Laboratory of Forest Management and Spatial Information Techniques (kevin.delaplace, frieke.vancoillie, robert.dewulf)@ugent.be  b GhentUniversity, Belgium Department of Soil Management and Soil Care donald.gabriels@ugent.be  c Flemish Government, Belgium Environment, Nature and Energy Department koen.desmet@lne.vlaanderen.be  d Institut des Régions Arides de Médenine, Tunisia med.ouessar@ira.agrinet.tn, (Azaiez.ouledbelgacem, taamallah.houcine)@ira.rnrt.tn
  • 3. Context Acacia raddiana forest steppe in Bou-Hedma national park, Tunisia  A. raddiana persists on edge of desert  keystone species pre-Saharan Tunisia zone  Past: Bou-Hedma no attention concerning biodiversity, protection and use  Result: desertification caused by excessive livestock grazing, partial land clearance, ploughing  soil erosion  1955: only few old trees left  Sixties: first actions to combat desertification/erosion  700 ha fenced  Tree nursery  Gradual restoration of vegetation  Two Integral Protection Zones  1977: part of the network of Biosphere Reserves of UNESCO  1985: regeneration actions Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 4.
  • 5. Context  Important activity in Bou-Hedma: restoration of original woodland combating desertification  afforestation and reforestation  Cooperation between Flemish Government & Direction Générale des Forêts of Tunisia  reforestation 50,000 ha with A. raddiana in historical geographic range  Part of larger project Kyoto Clean Development Mechanism (CDM)  scientific follow up of plantations, ecological and socio-economical consequences Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 6. Context Restoration of A. raddiana  induce local climate change  Consequences likely to occur  Change of soil temperature  Formation of humus by partial leaf shedding in summer  Influence on the cloud formation process, inducing precipitation  Interception of water by tree leaves and trunks, influencing erosion processes  However, scientific data remain scarce  Some phenological and ecophysiological studies  Little knowledge of composition, structure and by extension dynamics  useful to test efficiency of different management scenarios Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 7. Aim In order to evaluate future trends  assess current situation  Aim  RS-based monotemporal assessment of amount of A. raddiana  Estimation of diameter and height class distributions of A. raddiana  Research questions  What is the most appropriate (semi-)automated image processing procedure?  Are we able to establish models to estimate individual tree attributes?  Are we able to provide an estimate of the structure of the Acacia raddiana forest steppe at Bou-Hedma National Park? Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 8. Study area  Location 34°24’ N to 34°32’ N 09°23’ E to 09°41’ E Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 9. Study area  Location 34°24’ N to 34°32’ N 09°23’ E to 09°41’ E  Altitude 90 m - 814 m above sea level Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 10. Study area  Location 34°24’ N to 34°32’ N 09°23’ E to 09°41’ E  Altitude 90 m - 814 m above sea level  Climate: Mediterranean arid with temperate winters average annual rainfall 180 mm average temp 17.2°C mean max temp 38°C mean min temp 3.9°C Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 11. Field survey  Field conditions A. raddiana  Two spatial configurations  Plantations  ‘Natural’  Individuals & tree groups  Presence of Eucalyptus sp.  > 400 A. raddiana trees randomly sampled  Tree positions (UTM WGS84)  Tree bole diameter (basal and breast height)  Total tree height  Crown diameter (two perpendicular directions) Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 12. Imagery  GeoEye-1 scene  Spatial resolution: 0.5 m PAN, 2 m MS  Radiometric resolution: 11 bits per pixel  Spectral resolution: PAN, Blue, Green, Red, NIR  Acquisition date:  Optimum: discrimination trees, soil and vegetation largest  Dry season: no lush vegetation, low cloud cover, maximum leaf development  1st of August 2009 at 10:18 GMT Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 13. Imagery  GeoEye-1 scene  Spatial resolution: 0.5 m PAN, 2 m MS  Radiometric resolution: 11 bits per pixel  Spectral resolution: PAN, Blue, Green, Red, NIR  Acquisition date: 1st of August 2009 at 10:18 GMT  Cloud cover: 0%  Preprocessing:  Geometric correction by GeoEye Inc.  Coordinate system: UTM (WGS 84) Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 14. Imagery Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 15. Methodology GeoEye-1 MS bands Object-based approach Image Objects Multi-resolution Object feature GeoEye-1 / contrast-split calculation / NN PAN band 0 segmentation classification Measured tree attributes Input and reference data per reference object per reference object Acacia objects Object Features Crown diameter Tree height Crown diameter Segment 1 f1, f2, ………f200 5.2 2.5 Tree height Segment 2 f1, f2, ………f200 6.3 3.2 … ….. Segment i f1, f2, ………f200 4.1 2.1 Estimated tree attributes per Acacia object Small CD/TH/… Regression Accuracy models Large CD/TH/… Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 16. Methodology Image Objects Multi-resolution GeoEye-1 / contrast-split PAN band 0 segmentation  Multi-resolution segmentation (eCognition Developer 8): Parameter Value Scale 40 Shape 0.2 Compct 0.5 Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 17. Methodology Image Objects Multi-resolution GeoEye-1 / contrast-split PAN band 0 segmentation  Contrast-split segmentation (eCognition Developer 8): Parameter Value Contrast mode Edge difference Min rel area dark 0.1 Min rel area bright 0.1 Min contrast 0 Min object size 10 Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 18. Methodology GeoEye-1 PAN & MS bands Image Objects Acacia objects Object feature calculation / NN 0 classification Type Feature (200) Customized FDI (NIR-(R-B)), SAVI, NDVI Layer values Mean, Min, Max, Border contrast, Contrast to neighbour pixels, Edge contrast of neighbour pixels, StdDev to neighbour pixels, Circular mean Geometry Area, Assymetry, Density, Compactness Texture after Homogeneity, Mean, Correlation, Ang 2nd Haralick moment, Entropy Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 19. Methodology GeoEye-1 PAN & MS bands Image Objects Acacia objects Object feature calculation / NN 0 classification KIA=0.96 A. raddiana sp. Eucalyptus sp. Soil Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 20. Methodology GeoEye-1 object features Measured tree attributes Input and reference data per reference object per reference object Object Features Crown diameter Tree height Crown diameter Segment 1 f1, f2, ………f200 5.2 2.5 Tree height Segment 2 f1, f2, ………f200 6.3 3.2 … ….. Segment i f1, f2, ………f200 4.1 2.1 Measured Acacia’s: train & test sets Regression Correlation analysis Accuracy models Tree attribute Object feature Crown diameter Area Tree height Area Bole diameter Area Object feature Object feature Area GLCM Entropy Layer 4 (90°) Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 21. Methodology Regression Accuracy models Crown diameter estimation R² = 0.64 RMSE = 1.67 m MAPE = 21.6 % Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 22. Methodology Regression Accuracy models Crown diameter estimation R² = 0.96 RMSE = 14.7 pixels MAPE = 13.0 % Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 23. Methodology Regression Accuracy models Crown diameter estimation R² = 0.58 RMSE = 1.61 m MAPE = 22.0 % Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 24. Methodology Regression Accuracy models Crown diameter estimation 60 Measured crown diameter (field data) 50 Crown diameter derived from area (number of pixels) 40 Frequency Crown diameter derived from GLCM Entropy Layer 4 (90°) 30 20 10 0 [0,2] ]2,4] ]4,6] ]6,8] ]8,10] ]10,12] ]12,14] ]14,16] Crown Diameter Classes (m) Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 25. Methodology Acacia objects Estimated tree attributes per Acacia object Small CD/TH/… Regression models Large CD/TH/… characterising forest structure (arrangement of diameters), height and density Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 26. Results Acacia objects Estimated tree attributes per Acacia object Small CD/TH/… Regression models Large CD/TH/… Structure (Crown diameter) Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 27. Results Acacia objects Estimated tree attributes per Acacia object Small CD/TH/… Regression models Large CD/TH/… Density Characteristics original forest steppe, 1900 1925 (Zaafouri et al, 1996) Kernel of 1 ha (200×200 pixels, 0.5 m resolution) Tree attribute Value Total of 2596 non-overlapping kernels Total tree height 9 - 10 m (max 10 m) Excluding border effect Trunk height 3 – 4 m at most  mean density = 8.4 trees/ha Mean basal diameter 15 – 20 cm 2.3 – 3 m  max density = 95 trees/ha (plantations) BD of biggest trees Density 4 – 25 trees/ha Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 28. Conclusions Answer to RQ  Object-based segmentation/classification approach  suitably addressed estimation of amount of A. raddiana  Established models  adequately estimate of individual tree attributes  Estimation of structure, height and density Acacia raddiana forest steppe at Bou-Hedma National Park Future activities  Fine-tuning of segmentation / classification steps  Thorough validation  Multitemporal assessment  inclusion of phenological information  optimal image acquisition time to estimate amount of Acacia’s and their attributes Context – Aim – Study area – Imagery- Method – Results - Conclusions
  • 29. THANK YOU FOR YOUR ATTENTION (kevin.delaplace, frieke.vancoillie, robert.dewulf)@ugent.be Laboratory of Forest Management and Spatial Information Techniques, Ghent University, Belgium http://dfwm.ugent.be/forman Ghent, September 24, 2010 EARSeL Joint SIG Workshop: Urban - 3D - Radar - Thermal Remote Sensing and Developing Countries