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Saliency Based Hookworm and Infection Detection for Wireless Capsule Endoscopy Diagnosis
1.
International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1491 SALIENCY BASED HOOKWORM AND INFECTION DETECTION FOR WIRELESS CAPSULE ENDOSCOPY DIAGNOSIS S. Haritha1, N. Nivetha2, G. Radhika3, V. Jeyaramya4 1Student, Department of Electronics and Communication, Panimalar Institute of Technology, Chennai, Tamil Nadu 2 Student, Department of Electronics and Communication, Panimalar Institute of Technology, Chennai, Tamil Nadu 3 Student, Department of Electronics and Communication, Panimalar Institute of Technology, Chennai, Tamil Nadu 4Assistant Professor, Department of Electronics and Communication, Panimalar Institute of Technology, Chennai, Tamil Nadu ---------------------------------------------------------------------***--------------------------------------------------------------------- Abstract - An ulcer is a discontinuity or breaks in a bodily membrane that impedes the organ of which that membrane is a part of continuing its normal functions. Wireless capsule endoscopy (WCE) is a radical, patient-friendlyimagingsystem that aids non-invasive photographic review of the patient’s digestive tract and, especially, small intestine. However, reviewing the endoscopic dataistime-consumingandrequires the intense labor of highly experiencedphysicians. Inproposed method, a novel multi-level super pixel based image segmentation is used. After that, a particle swarm optimization using color and texture based features are extracted to diagnosis the disease. Key Words: WCE (Wireless Capsule Endoscopy), Endoscopic, Super-Pixel, Segmentation,PSO(ParticleSwarm Optimization) 1.INTRODUCTION Peptic ulcer disease (PUD),alsoidentifiedasa pepticulcer or stomach ulcer, is a chink in the stomach, first part of the small intestine, or sometimes the lower esophagus. The most common symptoms are waking from sleep with upper abdominal pain that can be reduced by eating. The ache is often explained as a burning or dull ache. Other symptoms include belching, vomiting, weight loss or poor appetite. About a third of older people have no symptoms. Complications may include bleeding, perforation and blockage of the stomach. Bleeding occurs in asmanyas15% of people. Identification and treatment will depend on your symptoms and the sternness of your ulcer. To diagnose a stomach ulcer, the doctor will check the medical history along with the symptoms and any prescription or over-the- counter medications taken. In a breath test, you’ll be instructed to drink a clear liquid and breathe into a bag, which is then sealed. Tests and procedure used to diagnose stomach ulcers also include: Barium X-Ray Endoscopy Endoscopy biopsy 1.1 HOOKWORM Hookworms are parasites that affect your lungs and small intestine. Humans contract hookworms through roundworm eggs and larvae found in dirt contaminated by faeces. The larvae enter your skin, travel through your bloodstream, and enter your lungs. Theyalsotravel through your windpipe and are carried to your small intestine when you swallow. SYMPTOMS: Abdominal pain Intestinal cramps Nausea Fever Blood in your stool Fig: Hookworm 2. METHODOLOGY Endoscopy constitutes the most common approach for diagnosing gastrointestinal (GI) tract related diseases. Traditional endoscopy techniques play an important role to the examination of the upper and lower ends of the GI tract. However, these techniques, apart from being highly inconvenient for the patients, can hardlyreachthemainpart of GI, the small bowel, due to its 7m-length and numerous windings. The solution to this limitation is the recently established WCE. WCE has markeda revolutioninthefieldof GI imaging, beginning an era of non-invasive visualization of the GI tract and, especially, the entire small bowel.Oneofthe most common GI medical findings efficiently detected by WCE is an ulcer. Approximately 10% of the people suffer from ulcerations. The main disadvantage of WCEisthetime- consuming task of reviewing the 55.000 images produced.
2.
International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1492 The analysis of this video data costs 1-2 h of intense labour for an experienced physician. Besides, abnormalitiesmay be easily missed due to oversight since they may appearinonly one or two frames. The techniques proposed includetexture spectrum along with neural networks and non-negative matrix factorization. Texture and colour features extracted from various colour spaces have contributed to ulcer recognition. At last, the texture analysis output is classified into healthy and ulcerous with the aid of various classification algorithms. 2.1 PRE-PROCESSING Preprocessing algorithms are the first processing step after capturing the image, as we see inmanyoftheexamples. The preprocessing functions discussed here can be divided into two basic groups, reliant on what the resulting brightness value of a pixel in the yield image isderivedfrom: 1. Pixel operations compute the brightnessofa pixel inthe output image exclusively from the intensity of the matching pixel in the source image. This group also encompasses image arithmetic functions which combine several images. Pixel operations can be further divided into homogeneous and in homogeneous pixel operations.Homogeneousactions use the same transformation function for each pixel, for in homogeneous ones the transformation function dependson the position of the pixel in the image. Pixel operations are discussed in the subsequent sections: Grayscale transformations Image arithmetic 2. Local operations take a certain neighborhood of the present pixel into account whencalculatingthebrightnessof the corresponding output image pixel. Local operations are discussed in the following sections: Linear filters Median filter Morphological filter Other non-linear filters 2.3 FEATURE SELECTION Feature selection is the process of picking a subset of the original featurespacesaccordingtodiscriminationcapability to improve the quality of data. This paper proposes a suggested image recovery model based on extracting the most applicable features from the whole features according to a feature selection technique. Feature extraction is done using the Gray level co-occurrence matrix(GLCM). It checks the repetition of the abnormal gray levels using a trained database as a reference. It can not only achieve maximum recognition rate but can also simplify the calculation of the image retrieval process. Particle Swarm Optimization (PSO) is used for feature selection technique. PSO is a computational method that optimizes a problem by iteratively trying to improve a candidate solution with certain parameters like; Energy Contrast Correlation Homogeneity etc., 2.4 PARTICLE SWARM OPTIMIZATION Particle swarm optimization (PSO) is a computational method that heightens a delinquent by iteratively trying to improve a candidate solution withregardtoa givenmeasure of quality. PSO is a metaheuristic as it makes few or no norms about the tricky being enhanced and can search very great spaces of candidate solutions. PSO can also be used on optimization problems that are partially irregular, noisy, change over time, etc. 2.5 BLOCK DIAGRAM The proposed block diagram for this project is given as follows: Fig: Block Diagram 2.5.1 INPUT IMAGE Input images should be in *.jpg; or the *.png format the images used for this project were taken from the related websites. . Fig: Sample WCE images INPUT PREPROCESSING THRESHOLD SEGMENTATION EDGE DETECTION MULTI LEVEL SUPER PIXEL DATA BASE PSO OUTPUT
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International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1493 2.6 ALGORITHM A basic optional of the PSO algorithm works by having a people (called a swarm) of entrant solutions (called particles). These particles are moved around in the search space according to a few simple formulate. The movements of the particles are guided by their own best-knownposition in the search space as well as the entireswarm'sbest-known position. When improved, sites are being discovered these will then come to chaperon the schedules of the swarm. The process is repeated and by doing so it is hoped, but not guaranteed, that a satisfactory solution will eventually be discovered. Officially, let f: Rn → R be the charge function which must be minimalized. The function takes a candidate solution as an argument in the form of a vector of real numbers and produces a real number as yield which indicates the objective function value of the given applicant solution. The gradient off is not known. The goal is to find a solution a for which f(a) ≤ f(b) for all b in the search-space, which would mean a is the universal minimum.Maximizationcanbemade by considering the function h = -f instead. Let S be the number of particles in the swarm,eachhaving a position xi ∈ Rn in the search space and a swiftnessvi ∈Rn. Let pi be the best-known position of particleiandletg bethe best-known position of the entire swarm. A basic PSO algorithm is then: For each particle i = 1, ..., S do: Initialize the particle's location with a uniformly distributed random vector: xi ~ U(blo, bup), where blo and bup are the lower and upper boundaries of the search-space. Set the particle's best known position to its primary position: pi ← xi If (f(pi) < f(g)) update theswarm'sbestknownposition: g ← pi Initialize the particle's velocity: vi ~ U(-|bup-blo|, |bup- blo|) Until a expiry criterion is met (e.g. number of iterations performed, or a solution with adequate objective function value is found), repeat: For each particle i = 1, ..., S do: For each dimension d = 1, ..., n do: Élite random numbers: rp, rg ~ U(0,1) Update the particle's velocity: vi,d← ωvi,d+φprp (pi,d-xi,d) + φg rg (gd-xi,d) Keep posted the particle's position: xi ← xi + vi If (f(xi) < f(pi)) do: Apprise the particle's best known position: pi ←xi If (f(pi) < f(g)) update the swarm's best known position: g ← pi Now g holds the best-found result. The parameters ω, φp, and φg are selected bytheexpertand control the behavior and efficacy of the PSO method. 2.7 MEDIAN FILTER A median filter is used to preserve edges while eliminating random clatters present in the image. For a two- dimensional image, the pictures are of 3-by-3 neighborhood value. The median filter swaps each entrywiththemedianof the neighboring entries. 2.8 SEGMENTATION Image segmentation is the process of partitioning a digital image into multiple segments THRESHOLDING The simplest thresholding methods replace each pixel in an image with a black pixel if the image intensity is fewer than some static constant T or a white pixel if the image intensity is greater than that constant. Here, instead ofusing a local threshold value we use a formulated global threshold value. EDGE SEGMENTATION Image processing is any form of information processing for which the input is an image, such as frames of video; the output is not necessarily an image but can be a set of features giving information about the image. Since images contain lots of redundant data,scholarshavediscoveredthat the most important information lies in its edges. Edges typically correspond to points in the image where the gray value changes significantly from one pixel to the next. 3 RESULT 3.1Analysis of a Normal or Healthy abdomen image: (a) Input Image
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International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1494 (b) Pre-processed image (c) Segmented image (d) Classification (e) Optimized Image (f) Output 3.2 Analysis of abnormal or infected abdomen image: (a) Input Image (b) Pre-processed image (a) Segmented image
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International Research Journal
of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1495 (d) Classification (e) Optimized Image (f) Output 4.CONCLUSION In this paper, we have detected the abnormalities in the abdomen using the wireless capsule endoscopy (WCE) images. The microscopic images of ulcer are examined by changes based on texture, geometry, colour, statically analysis used as the input. We have trainedandclassifiedthe microscopic images. This system is reliable and cost- effective. ACKNOWLEDGMENT: I sincerely thank my external guide and my internal guide for all their help and guidance and my project coordinators for giving me the opportunity to conduct my project work in Panimalar Institute of Technology. REFERNCES [1] A. Karargyris and N. Bourbakis, “Detection of small bowel polyps and ulcers in wireless capsule endoscopy videos,” Biomedical Engineering,IEEETransactionson, vol. 58, no. 10, pp. 2777–2786, 2011. [2] L. Zhang, Z. Gu, and H. Li, “Sdsp: A novel saliency detection method by combining simple priors.” in Image Processing (ICIP), 2013 20th IEEE International Conference on. IEEE, 2013, pp. 171–175. [3] S. Goferman, L. Zelnik-Manor, and A. Tal, “Context- aware saliency detection,” Pattern Analysis and Machine Intelligence, IEEE Transactions on, vol. 34, no. 10, pp. 1915–1926, 2012. [4] M.-M. Cheng, G.-X. Zhang, N. J. Mitra, X. Huang, and S.-M. Hu, “Global contrast based salient region detection,” in Computer Vision andPattern Recognition(CVPR),2011 IEEE Conference on. IEEE, 2011, pp. 409–416. [5] R. Achanta and S. Susstrunk, “Saliency detection using maximum symmetric surround,” in Image Processing (ICIP), 2010 17th IEEE International Conference on. IEEE, 2010, pp. 2653–2656. [6] R. Achanta, S. Hemami, F. Estrada, and S. Susstrunk, “Frequency-tuned salient region detection,” in Computer Vision and Pattern Recognition, 2009. CVPR 2009. IEEE Conference on. IEEE, 2009, pp. 1597–1604. [7] L. Zhang, M. H. Tong, T. K. Marks, H. Shan, and G. W. Cottrell, “Sun: A bayesian framework for saliency using natural statistics,” Journal of vision, vol. 8, no. 7, p. 32, 2008. [8] J. Harel, C. Koch, and P. Perona, “Graph-based visual saliency,” in Advances in neural informationprocessing systems, 2006, pp. 545–552. [9] L. Itti, C. Koch, and E. Niebur, “A model of saliency- based visual attention for rapid scene analysis,” IEEE Transactions on pattern analysis and machine intelligence, vol. 20, no. 11, pp. 1254–1259, 1998. [10] S. Lazebnik, C. Schmid, and J. Ponce, “Beyond bags of features: Spatial pyramid matching for recognizing natural scene categories,” in Computer Vision and Pattern Recognition, 2006 IEEE Computer Society Conference on, vol. 2. IEEE, 2006, pp. 2169–2178. [11] Y. Yuan and M. Q.-H. Meng, “Polyp classification based on bag of features and saliency in wireless capsule endoscopy,” in Robotics and Automation (ICRA), 2014 IEEE International Conference on. IEEE, 2014, pp. 3930–3935. [12] T. Ma, Y. Zou, Z. Xiang, L. Li, and Y. Li, “Wireless capsule endoscopy image classification based on vector sparse coding,” in Signal and Information Processing (ChinaSIP), 2014 IEEE China Summit & International Conference on. IEEE, 2014, pp. 582–586. [13] M. Safdari, R. Pasari, D. Rubin,andH.Greenspan,“Image patch-based method for automated classification and detection of focal liver lesions on ct,” in SPIE Medical Imaging. International SocietyforOpticsandPhotonics, 2013, pp. 86 700Y–86 700Y. [14] J. Wang, Y. Li, Y. Zhang, C. Wang, H. Xie, G. Chen, X. Gao, et al., “Bag-of-features based medical image retrieval via multiple assignment and visual words weighting,” IEEE transactions on medical imaging, vol. 30, no. 11, pp. 1996–2011, 2011. [15] J. Wang, J. Yang, K. Yu, F. Lv, T. Huang, and Y. Gong, “Localityconstrained linear coding for image classification,” in Computer Vision and Pattern Recognition (CVPR), 2010 IEEE Conference on. IEEE, 2010, pp. 3360–3367. [16] A. P. Moore, S. Prince, J. Warrell, U. Mohammed, and G. Jones, “Super-pixel lattices,” in Computer Vision and Pattern Recognition, 2008. CVPR 2008. IEEE Conference on. IEEE, 2008, pp. 1–8. [17] A. Levinshtein, A. Stere, K. N. Kutulakos, D. J. Fleet, S. J. Dickinson, and K. Siddiqi, “Turbopixels: Fast super- pixels using geometric flows,” Pattern Analysis and Machine Intelligence, IEEE Transactions on, vol. 31, no. 12, pp. 2290–2297, 2009. [18] L. Zhu, D. A. Klein, S. Frintrop, Z. Cao, and A. B. Cremers,
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of Engineering and Technology (IRJET) e-ISSN: 2395 -0056 Volume: 04 Issue: 03 | Mar -2017 www.irjet.net p-ISSN: 2395-0072 © 2017, IRJET | Impact Factor value: 5.181 | ISO 9001:2008 Certified Journal | Page 1496 “Multi-scale region-based saliency detection using w2 distance on n-dimensional normal distributions,” in Image Processing (ICIP), 2013 20th IEEE International Conference on. IEEE, 2013, pp. 176–180. [19] J. Yang, K. Yu, Y. Gong, and T. Huang, “Linear spatial pyramid matching using sparse coding for image classification,” in Computer Vision and Pattern Recognition, 2009. CVPR 2009. IEEE Conference on. IEEE, 2009, pp. 1794–1801. [20] R. Achanta, A. Shaji, K. Smith, A. Lucchi, P. Fua, and S. Susstrunk, “Slic super-pixels compared to state-of-the- art super-pixel methods,”PatternAnalysisandMachine Intelligence, IEEE Transactions on, vol. 34, no. 11, pp. 2274–2282, 2012. [21] T. Leung and J. Malik, “Representing and recognizing the visual appearance of materials using three- dimensional textons,” International Journal of Computer Vision, vol. 43, no. 1, pp. 29–44, 2001. [22] D. G. Lowe, “Distinctive image features from scale- invariant keypoints,” International Journal ofComputer Vision, vol. 60, no. 2, pp. 91–110, 2004. [23] N. Dalal and B. Triggs, “Histograms of oriented gradients for humandetection,”in ComputerVisionand Pattern Recognition, 2005. CVPR 2005. IEEE Computer Society Conference on, vol. 1. IEEE, 2005, pp. 886–893. [24] T. Ojala, M. Pietikainen, and T. Maenpaa, “Multiresolution gray-scale and rotation invariant texture classification with local binary patterns,” Pattern Analysis and Machine Intelligence, IEEE Transactions on, vol. 24, no. 7, pp. 971–987, 2002.
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