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GENERAL ARTICLES


Natural history collections: A call for national
information infrastructure
Vishwas Chavan* and S. Krishnan

Natural history collections are essential to biodiversity research, as they are the fundamental
underpinnings of all biological information. Converting these data sets in electronic format and
digitizing the specimens would provide easy access to valuable baseline information. While collec-
tions and museums from the developed world have initiated such work for the last few years, those
from the developing and under-developed parts of our globe are lagging behind. This article, while
emphasizing the need for such initiatives, describes SAMPADA, a software developed for automat-
ing a repository of collections and digitizing specimens. We further propose a model for developing
a ‘National Natural History Management Information Infrastructure’ to ensure digitization, auto-
mation of Indian biological collections and their dissemination to the user community.

NATURAL history collection records the world’s biota in                   Hence, having the data for collections in electronic
space and time, and documents what we do and do not                    format will help to provide a rapid tally of what is known
know about the biota1. Collections of organisms are the                and what is not known, and where and when biodiversity
fundamental underpinnings of all biological information.               collections have been made7. Further, developing a well-
They are time-capsules to analyse conditions from the                  constructed database will greatly increase the value of the
past and compare them with our present-day state of                    collection8. This knowledge will help prevent duplication
affairs. This information provides baseline data against               of research effort and will facilitate scientists’ ability to
which biological variations and environmental changes                  focus their attention on broad areas that are either com-
can be measured2,3. Therefore, collections are absolutely              pletely unknown or are likely to host significant diver-
essential to biodiversity research.                                    sity.
   The power of collections lies in their data: anatomic,                 This is especially true for a mega-biodiversity and
morphologic, genetic and geographic information that                   developing nation like India, which harbours rich and
contributes to our overall understanding of how species                diversified natural history collections. This article reviews
evolved, how they are related, and how they operate in                 biological collection digitization efforts worldwide. It
ecological systems4. The challenge is to make this infor-              highlights the salient features of SAMPADA, a tool deve-
mation accessible to those who need it the most, so as to              loped by the authors’ group to aid curators and collection
facilitate them to make informed and appropriate deci-                 managers to automate and digitize their collection reposi-
sions. Curators of the natural history collections are aware           tory. Authors propose development of National Natural
that museum research can no longer remain an end in                    History Management Information Infrastructure to ensure
itself, and must be increasingly geared to answering que-              digitization, automation of Indian biological collections
stions of contemporary relevance – in particular about the             and their dissemination to the user community.
management of the environment and biodiversity5.
   Creating a complete inventory of life on earth is incomp-
lete without reference to museum specimens. This empha-                Digitizing biological collections
sizes a need for a unique method of addressing these
biodiversity concepts, by providing an automated system
through which our rich natural history collections are
                                                                       Status
made more readily available to scientists and society.
                                                                       The collections held in the world’s 6500 or so natural
Since knowledge derived from biological collections will
                                                                       history museums – which total about 3 billion specimens,
influence the decision-making process and aid in new dis-
                                                                       not counting microorganisms – represent the work of
coveries, it will also affect the quality of life to be
                                                                       thousands of individuals carried out over centuries9. This
enjoyed in the future6.
                                                                       does not include living collections, preserved and docu-
                                                                       mented DNA samples, data from mapping and surveys
The authors are in the Information Division, National Chemical Labo-
ratory, Dr Homi Bhabha Road, Pune 411 008, India.                      and documented multimedia data through recent surveys.
*For correspondence. (e-mail: vishwas@ems.ncl.res.in)                  In recent years, an attempt has been made by major natu-
34                                                                              CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
GENERAL ARTICLES

ral history collections/museums to use tools and techni-        categorized as (a) multiple collections software, (b) bota-
ques offered by Information Technology to better manage         nical garden software, (c) herbarium collection software,
their repositories. Many of these museums and collec-           (d) entomological software, (e) survey/observation soft-
tions are making their presence felt on the World Wide          ware, (f) palaeontological collection software, and (g) other
Web (WWW), and thereby invite thousands of virtual              software. Table 1 lists the major packages.
visitors. However, this attempt is limited to the museums          However, many of the packages only collate index
located in the developed part of our globe.                     information and do not digitize the repository itself.
   By 2001, Smithsonian Institution has completed digi-         Many packages do not incorporate detailed systematics
tizing over 3.7 million specimens, which is 9% of its total     of each specimen, as taxonomic relationships are com-
specimens housed10. Mexico houses about 10 million              plex and dynamic. Due to different database structures,
specimens of which 20% has been digitized. Mexico’s             data gathered by these packages vary in precision and
National Commission of Knowledge and Use of Bio-                accuracy, and thus lose out on the interoperability front.
diversity, not only supported developing inventories of         Many of the packages lack use of controlled vocabulary
museums within the country, but sent scientists to muse-        and standardized terminology. None of these packages
ums worldwide to assemble data on Mexican speci-                encodes biological data collected from disparate sources
mens11. An exemplary database created by CONABIO,               (geographic, environmental, bibliographic). Most of these
has helped to set national priorities for conservation in       packages fall short in collating region or ecosystem-
Mexico. Recently, French National History Museum                specific information13. This calls for development of a
received a grant of US $ 420 million for a period of ten        unique, easy-to-use, cost-effective tool that could be used
years for its renovation and modernization, much of             by the collections from developing and under-developed
which would be spent on digitizing the collection that it       nations for collating specimen repository information and
harbours12. China holds 25 million specimens of which           also to digitize the specimen itself.
1% is digitized. Japan has 10 million specimens to be              Several information management systems have emerged
digitized. Canada houses about 32 million specimens,            during the past decade. Notable among them are World
while Indonesia houses about 5 million specimens. German        Data Center for Microorganisms, BioCISE (for European
collection facilities house nearly 74 million specimens,        Union), National Electronic Natural History Museum
much of which is in the process of digitization.                Reinvention Laboratory (for USA) and HISCOM (Herba-
   This clearly means that museum curators from deve-           rium Information Systems Committee, Australia). Many
loped and a few developing countries feel that digitiza-        of these museums and collections are making their pre-
tion of the world’s collections, and their inclusion on the     sence felt on the WWW and thereby invite thousands of
web-based databases is the way forward. Exploiting the          virtual visitors. Species Analyst, with the use of XML,
opportunities offered by networked databases is essential       can currently search approximately 10 million specimen
to ‘translating research-based information in a form that       records from 13 national history collections located world-
is accessible and useful’13. However, collections/museums       wide.
from the developing nations do not have encouragement,
expertise and infrastructure to automate information about
their repositories. Recently, Global Biodiversity Informa-      Natural History Collections in India: Status
tion Facility (GBIF; http://www.gbif.org/), has identified
digitization of biological collections as one of its major      India is one of the 12 mega-biodiversity countries
focus areas. GBIF plans to digitize the biological collec-      bestowed with rich floral and faunal diversity. Through
tions of the entire world within next ten years, with a rate    modern biological studies and surveys started during late
of 0.5 billon every year. GBIF is the largest of several ini-   18th century, India has a long history and tradition of
tiatives to make collection-based research and information      eco-friendly and sustainable nature conservation prac-
available to a wider audience by digitizing it and putting it   tices deeply rooted in its lifestyle and culture. Botanical
on networked databases. We hope that with such an ambi-         Survey of India (BSI) was constituted in 1890 and Zoo-
tious plan GBIF would be able to mobilize support in terms      logical Survey of India (ZSI) came into existence in
of technology, knowhow and also funding to collec-              1916. Recently, Forest Survey of India (FSI) was consti-
tions/museums from developing nations, to help them             tuted in 1981. By 2000, BSI and ZSI have covered little
automate their repository and digitize their specimens.         over 60 and 35% of the geographical region for floristic
                                                                and faunal surveys respectively14.
Technology at hand                                                 These agencies are involved in maintaining biological
                                                                collections in addition to those maintained by numerous
Attempts have also been made to develop software tools          university departments and colleges and other research
which could be used in collection management. These             institutions. To date there are about 200 + herbariums,
packages aim at helping to manage specimens or obser-           100 + zoological museums and more than 40 + micro-
vations of biological objects. These packages can be            organism collections spread across the length and breadth
CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003                                                                          35
GENERAL ARTICLES
                                      Table 1.   Software tools for management of biological collections

Software                                                         URL                                                  Taxon specificity

ATTA                http://atta.inbio.ac.cr/atta03.html                                                          Taxon-independent
AviSys              http://www.avisys.net/                                                                       Birds
BibMaster           http://www.rjb.csic.es/bibmaste/bibcaract.htm                                                Botany
BioLink             http://www.biolink.csiro.au                                                                  Taxon-independent
Biota               http://viceroy.eeb.uconn.edu/biota                                                           Taxon-independent
Biotica             http://www.conabio.gob.mx (Look under ‘Sistema de Información BIÓTICA’)                      Taxon-independent
Bird Recorder       http://www.wildlife.co.uk/                                                                   Birds
BG-BASE             http://rbge-sun1.rbge.org.uk/BG-BASE/                                                        Botany
Brahms              http://www.brahms.co.uk                                                                      Botany
Cassia              http://www.nybg.org/bsci/cass/                                                               Botany
DEMUS               http://www.mzm.cz/engmzm/demus.htm                                                           Taxon-independent
FieldNote           http://www.cs.ukc.ac.uk/projects/mobicomp/Fieldwork/Software/index.html                      Taxon-independent
FLORIN              http://www.florin.ru/florin/                                                                 Botany
HERBAR              http://www.rjb.csic.es/herbario/herbar.htm                                                   Botany
KE EMu              http://www.ke.com.au/ke/products/emu/emu.html                                                Taxon-independent
Mandala             http://pherocera.inhs.uiuc.edu/index.htm                                                     Entomology (esp. Diptera)
Mantis              http://viceroy.eeb.uconn.edu/interkey/database.html                                          Entomology
                                                                                                                 (esp. Orthoptera)
Multi MIMSY 2000 http://www.willo.com/cgi/content.cgi?main.html,mm2000.html,intro_left,mm2000.html,intro_right   Taxon-independent
MUSE             http://usobi.org/specify/musesup.html                                                           Taxon-independent
                                                                                                                 (but with strong fish focus)
PaleoTax            www.paleotax.de                                                                              Palaeontology
PANDORA             http://www.rbge.org.uk/pandora.home                                                          Botany
PRECIS              http://www.sabonet.org/countries/precis.html                                                 Botany
SAMPADA             http://www.ncbi.org.in/sampada/index.html                                                    Taxon-independent
SMASCH              http://www.mip.berkeley.edu/www_apps/smasch/                                                 Botany
Specify             http://usobi.org/specify/default.htm                                                         Taxon-independent
SysTax              http://www.biologie.uni-ulm.de/systax/index.html                                             Botany
TAXIS               http://bio-tools.tcn.ru/products/taxis/index.htm                                             Taxon-independent
TRACY               http://www.csdl.tamu.edu/FLORA/input/inputsys.html                                           Botany
UCD HMS             http://herbarium.ucdavis.edu/herbaccess/databaseinfo.htm                                     Botany




of this nation. It is estimated that these collections                   towards building a ‘National Natural History Manage-
together house more than 10–15 million specimens. Also,                  ment Information InfraStructure (NHMIS)’.
information on availability and occurrence of these speci-
mens has been documented through hundreds of mapping
and survey projects during the last 50 years.                            SAMPADA: An Indian initiative
   However, many of these collections are in a bad condi-
tion, for want of appropriate funding and better manage-                 In order to accelerate efforts to computerize the biologi-
ment. The biological collections community in India, like                cal collections in India, National Chemical Laboratory
its counterparts in other regions of the globe, is frag-                 (NCL), Pune, as part of its initiative in the field of biodi-
mented because of taxonomic boundaries, project scope                    versity informatics, developed SAMPADA. One of main
(survey vs collection, etc.). Until recently, there have not             aims of this activity was to develop cost-efficient, easy-
been any significant efforts made towards computeriza-                   to-use, and interoperable tools for biological collections
tion of biological collections in India. One of the major                located in the developing world.
issues is unavailability of required funds and lack of                      SAMPADA is a Sanskrit word, which means ‘natural
interest of R&D managers in better maintaining our rich                  wealth’ or ‘heritage’. It is an attempt to assist individual
natural heritage through collection holdings. This is fur-               biological collections to develop their own repository
ther aggravated by the fact that there is no pressure/                   database. SAMPADA was developed keeping in view
demand for the same from the user community.                             that it should facilitate data acquisition and storage, mod-
   Given these facts, there lies great potential for under-              erate query support, unique specimen and collection-
taking activities in this area. Such efforts would prove as              specific barcode, digitization of specimen, restrictive data
a bridge between holders of biological collections and the               access to prevent mishandling of data/information, easy-
users, and greater and efficient access to information                   to-use with bare minimum infrastructure.
about specimens or observations. This would provide                         Considering that many collections/museums from deve-
access to ready-to-use baseline data for a variety of stu-               loping and under-developed nations do not have state-of-
dies. Hence, initiating consorted efforts towards digiti-                the-art computing infrastructure, the current version of
zation of biological collections would be the first step                 SAMPADA is intended to be used as a stand-alone pack-

36                                                                                 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
GENERAL ARTICLES

age by individual museums/collections. Though used in               mation handling. Netbeans 3.3 is used for interface deve-
a distributed manner because of its uniform database                lopment. A combination of these two provides scalability
structure, SAMPADA would achieve its goal of data/                  and platform independence to the package. Public domain
information in easily exchangeable format, thus achieving           package InstallAnyWhere (http://www.installanywhere.
interoperability with other databases of similar nature.            com/) is used for creating install-ready version of the
   Closer interaction with subject experts and museum               application. Beta-users tested the system on their own
curators revealed that information on parameters such as            PCs. Current version of SAMPADA would run on any
museum details, collector/identifier details, repository            Pentium II PC (350 MHz or more) with minimum of
information, field data, systematics, synonym, common               64 MB of RAM. Operating systems required for SAM-
name, images of specimen, additional notes and references           PADA can be Microsoft Windows 98/ME/NT/2000. It
for the species, must be collected through this package.            also requires Java Development kit and Java Media Frame-
Data structure of SAMPADA consists of ten interrelated              work. Sufficient care has been taken in the current ver-
sections (referred to as tables), encompassing information          sion of SAMPADA to provide enough security and
on the above-referred parameters. Both between and                  restrictive access to data entered.
within the tables, relationships have been created to faci-
litate the organization of information. Figure 1 shows the          Generation of barcode
overall structure of the database, including shared rela-
tionships. MySQL (http://www.mysql.org/), a public                  Generation of a unique barcode for each individual speci-
domain RDBMS is used for database creation and infor-               men is one of the major features of SAMPADA. This




                           Figure 1.   SAMPADA database structure and interrelationships between tables.

CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003                                                                           37
GENERAL ARTICLES

would help locate the specimen with ease by curators                 every time. Data gathered from specimens and biblio-
and researchers. This shall prevent potential trafficking            graphic sources, names, authors, synonyms, common
of the specimens. For the current exercise Code 128,                 names, types, ecological details, etc. are formatted into
which is capable of encoding the full ASCII 128 chara-               different categories, saving vast amount of time with
cter set, the 128 extended ASCII character set and four              fussy and complex data sorting and formatting. Hence,
non-data function characters is implemented. It allows               collections/museums can use SAMPADA to index their
numeric data to be represented in a computer double-                 collections and scientifically credible taxonomic informa-
density mode, two data digits for every symbol character.            tion. Enriched with information, SAMPADA would
Barcode for each specimen is generated as a combination              become a tool for accessing knowledge about accepted
of geographic location of the museum/collection and                  scientific names, synonyms, common names and authen-
accession number of the specimen in the respective col-              ticate systematics of specimens within the museum/col-
lection (Figure 2). It was felt that with such a schematic,          lection.
creation of the same barcode for two different specimens
could be prevented. Figure 3 shows the barcode gene-
rated for sample specimen. Currently, fields relevant to
                                                                     Digitizing specimen
location of the specimen are encoded to generate a uni-
                                                                     One of the major objectives of developing SAMPADA
que identifier for the collection sample. However, it is
                                                                     was to facilitate digitization of specimens themselves.
proposed to encode the entire scientific content in a com-
                                                                     The program facilitates archiving five images for each
pact format, which will be available with global standard.
                                                                     specimen (Figure 5). These images can be line diagrams,
As advanced bar coding systems are available, today
                                                                     scanned photographs, video and/or audio clippings of the
encoded data can be portable in this format, hence over-
                                                                     specimen, which would prove helpful in visual identi-
coming the space issue in the digitized world itself.
                                                                     fication of the specimen based on characteristics as cap-
                                                                     tured in the graphics.
Taxonomic knowledge management

The systematics section offers fields for a complete taxo-
                                                                     Easy to use
nomic tree of the species from kingdom to species level
                                                                     Based on the various tests conducted with beta-users, it
and, where applicable, sub-specific designations (Figure
                                                                     could now be concluded that the overall performance of
4). Publication details from which classification has been
                                                                     the system was satisfactory. Beta-users consist of poten-
validated/referred can be entered in the data source table.
                                                                     tial experts, scientists, academicians, software profes-
A synonym and common name of the species would be
                                                                     sional, etc. Positive responses received from them
collated through synonym and common name tables res-
                                                                     indicate the high level of user-friendliness of the system.
pectively. For multiple specimens of the same species,
                                                                     The benefit of SAMPADA is efficient data entry and data
classification details need not be entered repetitively
                                                                     framework that help in editing data in a logical and step-
                                                                     by-step manner. Currently, around 20 collections/ muse-
                                                                     ums are using SAMPADA, which is available free of cost
                                                                     to R&D, academic and non-profit collection facilities.
                                                                     It can be downloaded or requested at http://www.
                                                                     ncbi.org.in/sampada. Feasibility of extending the use of
                                                                     SAMPADA on a global scale is being explored, and nec-
                                                                     essary modifications are being incorporated in the current
                                                                     version.


                                                                     A call for national information infrastructure

                                                                     The current version of SAMPADA (ver. 2.0) is part of a
                                                                     broader vision and strategy to develop national NHMIS
                                                                     (Figure 6) for developing and under-developed nations.
                                                                     Use of this stand-alone version of SAMPADA by various
                                                                     collections would allow exchange/sharing of data amongst
                                                                     collection facilities, as collected information would be in
                                                                     a uniform and standardized format. It is envisaged that
                                                                     once individual collections would automate their reposi-
 Figure 2.   Scheme used for barcode generation for each specimen.   tory information using SAMPADA, integrating these
38                                                                           CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
GENERAL ARTICLES

individual information bases at a national level could                However, developing such a national information
generate a collective mega database. This would aid sci-           infrastructure facility calls for concerted efforts on the
entists, researchers, ecologists, biologists and environ-          part of all concerned, viz. curators, taxonomists, manag-
mentalists as well as common public in retrieving                  ers of collection/museum facilities and users. The follow-
information about the specimen of their interest.                  ing section explores possible blocks and barriers to bring
   Possible architecture for NHMIS includes (a) single             the dream of ‘virtually connected collections/museums’
client/server database by all collections, (b) central sum-        into reality.
mary systems, (c) central gateway to distributed data-
bases (common access system), (d) peer-to-peer databases           Blocks and barriers
(multiple Z39.50 servers and clients), and (e) web direc-
tory pointing to data sources. In order to achieve this            One of the major blocks that curators often talk about is
goal, we are planning to develop a central repository              unavailability of required funds to undertake digitization
package, which would work at the server end (Figure 6).            activities. In order to overcome the financial crunch, big
This would facilitate museums/collections with Internet            collections are becoming independent institutions15,16.
connectivity to directly utilize resources available at the        However, smaller collections as well as even big ones
central repository. Currently, the system is working at the        from developing and under-developed nations cannot
institute level; as the number of users increases, the             afford to become independent to overcome the financial
encoded data can be made available at the country level            problem. Museum funding continues to decline and many
or even at the global level. In one way this system will be        institutions survive on starvation budgets; thus comput-
instrumental to map the distribution of species in our             erization is of lower priority compared to other urgent
subcontinent.                                                      infrastructure needs. The option of minimal management




                                     Figure 3.   Unique barcode generated for each specimen.

CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003                                                                          39
GENERAL ARTICLES




                              Figure 4.   SAMPADA facilitates collation of detailed systematics knowledge.



of collections is often adopted, leading to a collection/             natural history collections in biodiversity conservation
museum often becoming orphaned. The result is a tragic,               remains unnoticed. We see potential in receiving more
irreplaceable loss of biodiversity data. Financing the                funding from national governments, by leveraging on
creation of such information systems is beyond the                    access to museum data. However, there seems to be mis-
resources of the institutions that possess the knowledge              led conviction amongst curators about issues related to
base of specimens and expertise. Further, funding agen-               intellectual property rights, and wider and free dissemi-
cies consider the task insufficiently innovative. However,            nation of data/information. Emergence of more European
the irony is that a country stands to benefit immensely               and US collections/museums on the web, demonstrates
from such information system. Government and interna-                 that enough safeguard mechanisms, policies and legis-
tional development agencies should realize that investing             lations are in place with respect to intellectual property
now in computerizing systematic biology collections                   rights, appropriate acknowledgements, credits and mini-
would pay dividends now and in the future.                            mal misuse of data/information. These could further be
   However, we strongly believe that an equally impor-                worked out considering the mega diverse nature of our
tant problem is that of culture and attitude amongst many             biotic resources. However, what is required is proactive
of our collection facilities. Majority of the museum faci-            action and teaming together without any preconceived
lities strongly resist becoming multidisciplinary in their            excuses to start planning and implementing digitization
approach and opening their gates to wider user-commu-                 activities.
nity. Reasons for such a state are rooted in insufficient
infrastructure facilities, as well as lack of capacity (train-
ing) and career-building opportunities for those working              Potentials and recommendations
in these facilities. This is further aggravated by lack of
required encouragement and support from managements                   For NHMIS to achieve its objective of making data on
and potential funding agencies, which is forcing this                 biological collections available to its user community
community to shrink within its own cocoon.                            across the globe, proper planning, phased implementation
   In today’s world of competitive globalization, success             and collaborative efforts are the keys to success. A
depends on how well one teams up together. Contrary to                National Workshop on Information Technology in Bio-
this fact, the museum/collection community in our part of             logical Collections Management held at NCL, Pune dur-
the globe is fragmented. Due to lack of collaborative                 ing 10–11 January 2002 discussed the strategies and
efforts amongst the community, the significant role of                action plan for digitizing biological collections in the
40                                                                              CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
GENERAL ARTICLES




                                               Figure 5.   Archiving of digitized images of specimen.



                                                  Schematics for Next Generation SAMPADA

                           Dissemination                              Processing                            Acquisition

                                Offline                                                                  Museums /
                              Collections /                                                              Collections
                                                                      SAMPADA                             (offline)
                              Custodians                               CDROM
                                                                                                        LDB Development
                              LDB Development

                                                                                                        Offline submission
                                                                     SAMPADA
                   Regional /      SAMPADA                            Central                                        Regional acquisition
                   multilingual     Regional         Mirroring                                             SAMPADA through Virtual
                   dissemination                                       Server                               Regional Network of museums
                                     Node
                                                                                                             Node

                                                                  Integrated & Processed
                                                                          Datasets
                                              WEB
                                              WEB                   Approved Datasets        Harvesting      Data Submission
                                                                   Incoming / Pending                        Through DEI
                                                                        Datasets
                                Online
                                                                                           Direct DEI      Online
                              Collections /
                                                                                           Submission     Collections
                               Net Users

                              DEI – Data Entry Interface
                              LDB – Local Database Builder


                                              Figure 6.    Schematics of Next Generation of SAMPADA.


country and made recommendations specific to develop-                             collaborative initiatives for digitalizing the collection are
ment of a national information infrastructure for natural                         imperative as costs of digitalization are beyond the budget
history collections17.                                                            of individual institutions. Concerted efforts are needed to
   It is important that collections become multidiscipli-                         seek technical and financial support from national, multi-
nary in research, and show greater willingness to colla-                          national, international agencies as well as corporate houses
borate with external researchers. Museum staff should be                          for achieving the task of NHMIS. This would ensure wider
encouraged to seek research collaborations, both within                           participation of various agencies (academic, research agen-
and in the wider community. National and international                            cies and universities) into this programme.
CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003                                                                                            41
GENERAL ARTICLES

   Initially, NHMIS may concentrate to collate knowledge       (e) privacy rights of collectors and researchers. Until
about biological collections (dead plant and animal speci-     flaws in the network safeguards are fixed, data requests
mens). However, at later stages its scope should be            can be handled on a case-by-case basis.
expanded to collate information about living collections
(botanical gardens, zoological parks, etc.). Interactive       Conclusion
identification keys, which consist of digital images and       Rapid biological inventories would provide powerful
associated text, also allow museums to increase accessi-       means to bridge information gaps leading to fool-proof
bility to their collections. Biological collections data       policy making. The advent of new information technolo-
along with remote sensing, geographic information sys-         gies allows natural history museums to digitize collec-
tems, and geo-referencing tools would help to develop          tions and to make associated scientific data accessible to
predictive models for the distribution of rare and threat-     a wide audience. These technologies enable the sharing
ened species, management plans, models for restoration,        of data with parties that have provided collection material,
and monitoring protocols for protected areas when repo-        thereby closing the digital divide. Database and imaging
sitory information from various collection holders is inte-    technologies can also transform enormous collections
grated into a single collated database.                        into innovative tools for identification in the field.
   Along with web-based dissemination, CD-ROM disse-              Natural history museums should collect and dissemi-
mination of digitized information is essential. It was sug-    nate information faster. The economic forces that drive
gested that facility for building customized reports should    unsustainable natural-resource depletion are strong and
be provided while disseminating information. In order to be    are gaining speed. Rapid biological inventories provide
able to exchange/share information collated through Indian     time-sensitive, accurate data for areas of high conserva-
NHMIS, with those of other initiatives of similar nature,      tion concern. By actively forging relationships with govern-
the issue of compatibility and interoperability may be given   ment officials, scientists and community leaders, natural
serious consideration, especially those for taxonomic, eco-    history museums can increase the number and impact of
logical and geographical knowledge management.                 concurrent rapid biological inventories.
   In order to pursue the goal of NHMIS, brainstorming
discussion among experts, technocrats and users may be
                                                                1. Duckworth, W. D., Genoways, H. H. and Rose, C. L., in Preserv-
held at regular intervals (atleast once a year). Review of
                                                                   ing our Natural Science Collections: Chronicle of our Environ-
the progress made in this direction can also be undertaken         mental Heritage, National Institute for the Conservation of
at such meetings. It is important that a Memorandum of             Cultural Property, Washington DC, 1993.
Understanding (MOU) be developed and signed among               2. Wilson, E. O., in The diversity of Life, (Reissue edn), W.W. Nor-
parties participating in NHMIS. Such MOU may cover                 ton, New York, 1999.
                                                                3. PCAST (President’s Committee of Advisors on Science and Tech-
issues related to information exchange/sharing, owner-
                                                                   nology), in Teaming with Life: Investigating in Science to Under-
ship, intellectual property rights, commitments, financial         stand and Use America’s Living Capital, Office of the President,
sharing, etc. To achieve the goal of NHMIS, capacity-              Washington, D.C., 1998.
building training programmes are needed for collection          4. McCarter, J., Boge, G. and Darlow, G., Science, 2001, 294, 2099–
managers, curators and staff. Such training programmes/            2101.
                                                                5. Nature Briefing, Nature, 1998, 394, 118.
workshops may be conducted at regular intervals. Funding
                                                                6. Balckmore, S., Science, 1996, 274, 63–64.
for such activities can be sought from national/regio-          7. Waggoner, G. S, Frondorf, A., Gomon, J. and Schanse, J. L., in
nal/global agencies interested and working on biodiver-            Final Report of the National Electronic Natural History Museum
sity-related issues.                                               Reinvention Laboratory: A Framework for Next Generation Capa-
   For taxonomic knowledge management, five-kingdom                bilities (ed. D’Erchia, T.), Denver, Colorado, 2000, p. 45.
                                                                8. National Science Board, in Environmental Science and Engineer-
classification system must be used in SAMPADA. For
                                                                   ing for the 21st Century – The Role of the National Science Founda-
this, feasibility of integrating the already developed sys-        tion (Interim Report), February 2000. Available at http://www.nsf.
tems such as Integrated Taxonomic Information System               gov/pubs/2000/nsb0022/reports/nsb0022.pdf
(ITIS) or similar systems into SAMPADA may be                   9. Butler, D., Gee, H. and Macilwain, C., Nature, 1998, 394, 115–117.
explored. Discussions may be initiated with such inter-        10. Miller, S., Science, 2001, 293, 1433.
                                                               11. Arnold, N., Nature, 1998, 394, 517.
national initiatives for potential collaborations.
                                                               12. Butler, D., ibid, 1999, 401, 104.
   Due credits and acknowledgements should be given to         13. Lane, M. A., Ann. Mo. Bot. Gard., 1996, 83, 536–545.
data collectors, holders and curators as well as agencies.     14. Pushpangadan, P. and Nair, K. N., Curr. Sci., 2001, 80, 631–635.
Before museums permit sensitive data fields (e.g. collec-      15. Capparella, A., Nature, 1999, 400, 207.
tor, date, locality and distribution and reproductive infor-   16. Graves, G. R., Tree, 2000, 15, 374.
                                                               17. In Report of the National Workshop on Information Technology in
mation) for entire collections to be posted on the web,
                                                                   Biological Collections Management, NCL, Pune, 2002, p. 26.
legally binding safeguards and provisions are needed.
Some of these include (a) intellectual property rights,        ACKNOWLEDGEMENTS.            We thank the Director, NCL, Pune for
                                                               support and guidance.
(b) commercial use and licensing, (c) acknowledgement
in the publication, (d) endangered species data and            Received 7 August 2002; revised accepted 18 September 2002

42                                                                       CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003

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Currsci Jan10 2003

  • 1. GENERAL ARTICLES Natural history collections: A call for national information infrastructure Vishwas Chavan* and S. Krishnan Natural history collections are essential to biodiversity research, as they are the fundamental underpinnings of all biological information. Converting these data sets in electronic format and digitizing the specimens would provide easy access to valuable baseline information. While collec- tions and museums from the developed world have initiated such work for the last few years, those from the developing and under-developed parts of our globe are lagging behind. This article, while emphasizing the need for such initiatives, describes SAMPADA, a software developed for automat- ing a repository of collections and digitizing specimens. We further propose a model for developing a ‘National Natural History Management Information Infrastructure’ to ensure digitization, auto- mation of Indian biological collections and their dissemination to the user community. NATURAL history collection records the world’s biota in Hence, having the data for collections in electronic space and time, and documents what we do and do not format will help to provide a rapid tally of what is known know about the biota1. Collections of organisms are the and what is not known, and where and when biodiversity fundamental underpinnings of all biological information. collections have been made7. Further, developing a well- They are time-capsules to analyse conditions from the constructed database will greatly increase the value of the past and compare them with our present-day state of collection8. This knowledge will help prevent duplication affairs. This information provides baseline data against of research effort and will facilitate scientists’ ability to which biological variations and environmental changes focus their attention on broad areas that are either com- can be measured2,3. Therefore, collections are absolutely pletely unknown or are likely to host significant diver- essential to biodiversity research. sity. The power of collections lies in their data: anatomic, This is especially true for a mega-biodiversity and morphologic, genetic and geographic information that developing nation like India, which harbours rich and contributes to our overall understanding of how species diversified natural history collections. This article reviews evolved, how they are related, and how they operate in biological collection digitization efforts worldwide. It ecological systems4. The challenge is to make this infor- highlights the salient features of SAMPADA, a tool deve- mation accessible to those who need it the most, so as to loped by the authors’ group to aid curators and collection facilitate them to make informed and appropriate deci- managers to automate and digitize their collection reposi- sions. Curators of the natural history collections are aware tory. Authors propose development of National Natural that museum research can no longer remain an end in History Management Information Infrastructure to ensure itself, and must be increasingly geared to answering que- digitization, automation of Indian biological collections stions of contemporary relevance – in particular about the and their dissemination to the user community. management of the environment and biodiversity5. Creating a complete inventory of life on earth is incomp- lete without reference to museum specimens. This empha- Digitizing biological collections sizes a need for a unique method of addressing these biodiversity concepts, by providing an automated system through which our rich natural history collections are Status made more readily available to scientists and society. The collections held in the world’s 6500 or so natural Since knowledge derived from biological collections will history museums – which total about 3 billion specimens, influence the decision-making process and aid in new dis- not counting microorganisms – represent the work of coveries, it will also affect the quality of life to be thousands of individuals carried out over centuries9. This enjoyed in the future6. does not include living collections, preserved and docu- mented DNA samples, data from mapping and surveys The authors are in the Information Division, National Chemical Labo- ratory, Dr Homi Bhabha Road, Pune 411 008, India. and documented multimedia data through recent surveys. *For correspondence. (e-mail: vishwas@ems.ncl.res.in) In recent years, an attempt has been made by major natu- 34 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
  • 2. GENERAL ARTICLES ral history collections/museums to use tools and techni- categorized as (a) multiple collections software, (b) bota- ques offered by Information Technology to better manage nical garden software, (c) herbarium collection software, their repositories. Many of these museums and collec- (d) entomological software, (e) survey/observation soft- tions are making their presence felt on the World Wide ware, (f) palaeontological collection software, and (g) other Web (WWW), and thereby invite thousands of virtual software. Table 1 lists the major packages. visitors. However, this attempt is limited to the museums However, many of the packages only collate index located in the developed part of our globe. information and do not digitize the repository itself. By 2001, Smithsonian Institution has completed digi- Many packages do not incorporate detailed systematics tizing over 3.7 million specimens, which is 9% of its total of each specimen, as taxonomic relationships are com- specimens housed10. Mexico houses about 10 million plex and dynamic. Due to different database structures, specimens of which 20% has been digitized. Mexico’s data gathered by these packages vary in precision and National Commission of Knowledge and Use of Bio- accuracy, and thus lose out on the interoperability front. diversity, not only supported developing inventories of Many of the packages lack use of controlled vocabulary museums within the country, but sent scientists to muse- and standardized terminology. None of these packages ums worldwide to assemble data on Mexican speci- encodes biological data collected from disparate sources mens11. An exemplary database created by CONABIO, (geographic, environmental, bibliographic). Most of these has helped to set national priorities for conservation in packages fall short in collating region or ecosystem- Mexico. Recently, French National History Museum specific information13. This calls for development of a received a grant of US $ 420 million for a period of ten unique, easy-to-use, cost-effective tool that could be used years for its renovation and modernization, much of by the collections from developing and under-developed which would be spent on digitizing the collection that it nations for collating specimen repository information and harbours12. China holds 25 million specimens of which also to digitize the specimen itself. 1% is digitized. Japan has 10 million specimens to be Several information management systems have emerged digitized. Canada houses about 32 million specimens, during the past decade. Notable among them are World while Indonesia houses about 5 million specimens. German Data Center for Microorganisms, BioCISE (for European collection facilities house nearly 74 million specimens, Union), National Electronic Natural History Museum much of which is in the process of digitization. Reinvention Laboratory (for USA) and HISCOM (Herba- This clearly means that museum curators from deve- rium Information Systems Committee, Australia). Many loped and a few developing countries feel that digitiza- of these museums and collections are making their pre- tion of the world’s collections, and their inclusion on the sence felt on the WWW and thereby invite thousands of web-based databases is the way forward. Exploiting the virtual visitors. Species Analyst, with the use of XML, opportunities offered by networked databases is essential can currently search approximately 10 million specimen to ‘translating research-based information in a form that records from 13 national history collections located world- is accessible and useful’13. However, collections/museums wide. from the developing nations do not have encouragement, expertise and infrastructure to automate information about their repositories. Recently, Global Biodiversity Informa- Natural History Collections in India: Status tion Facility (GBIF; http://www.gbif.org/), has identified digitization of biological collections as one of its major India is one of the 12 mega-biodiversity countries focus areas. GBIF plans to digitize the biological collec- bestowed with rich floral and faunal diversity. Through tions of the entire world within next ten years, with a rate modern biological studies and surveys started during late of 0.5 billon every year. GBIF is the largest of several ini- 18th century, India has a long history and tradition of tiatives to make collection-based research and information eco-friendly and sustainable nature conservation prac- available to a wider audience by digitizing it and putting it tices deeply rooted in its lifestyle and culture. Botanical on networked databases. We hope that with such an ambi- Survey of India (BSI) was constituted in 1890 and Zoo- tious plan GBIF would be able to mobilize support in terms logical Survey of India (ZSI) came into existence in of technology, knowhow and also funding to collec- 1916. Recently, Forest Survey of India (FSI) was consti- tions/museums from developing nations, to help them tuted in 1981. By 2000, BSI and ZSI have covered little automate their repository and digitize their specimens. over 60 and 35% of the geographical region for floristic and faunal surveys respectively14. Technology at hand These agencies are involved in maintaining biological collections in addition to those maintained by numerous Attempts have also been made to develop software tools university departments and colleges and other research which could be used in collection management. These institutions. To date there are about 200 + herbariums, packages aim at helping to manage specimens or obser- 100 + zoological museums and more than 40 + micro- vations of biological objects. These packages can be organism collections spread across the length and breadth CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003 35
  • 3. GENERAL ARTICLES Table 1. Software tools for management of biological collections Software URL Taxon specificity ATTA http://atta.inbio.ac.cr/atta03.html Taxon-independent AviSys http://www.avisys.net/ Birds BibMaster http://www.rjb.csic.es/bibmaste/bibcaract.htm Botany BioLink http://www.biolink.csiro.au Taxon-independent Biota http://viceroy.eeb.uconn.edu/biota Taxon-independent Biotica http://www.conabio.gob.mx (Look under ‘Sistema de Información BIÓTICA’) Taxon-independent Bird Recorder http://www.wildlife.co.uk/ Birds BG-BASE http://rbge-sun1.rbge.org.uk/BG-BASE/ Botany Brahms http://www.brahms.co.uk Botany Cassia http://www.nybg.org/bsci/cass/ Botany DEMUS http://www.mzm.cz/engmzm/demus.htm Taxon-independent FieldNote http://www.cs.ukc.ac.uk/projects/mobicomp/Fieldwork/Software/index.html Taxon-independent FLORIN http://www.florin.ru/florin/ Botany HERBAR http://www.rjb.csic.es/herbario/herbar.htm Botany KE EMu http://www.ke.com.au/ke/products/emu/emu.html Taxon-independent Mandala http://pherocera.inhs.uiuc.edu/index.htm Entomology (esp. Diptera) Mantis http://viceroy.eeb.uconn.edu/interkey/database.html Entomology (esp. Orthoptera) Multi MIMSY 2000 http://www.willo.com/cgi/content.cgi?main.html,mm2000.html,intro_left,mm2000.html,intro_right Taxon-independent MUSE http://usobi.org/specify/musesup.html Taxon-independent (but with strong fish focus) PaleoTax www.paleotax.de Palaeontology PANDORA http://www.rbge.org.uk/pandora.home Botany PRECIS http://www.sabonet.org/countries/precis.html Botany SAMPADA http://www.ncbi.org.in/sampada/index.html Taxon-independent SMASCH http://www.mip.berkeley.edu/www_apps/smasch/ Botany Specify http://usobi.org/specify/default.htm Taxon-independent SysTax http://www.biologie.uni-ulm.de/systax/index.html Botany TAXIS http://bio-tools.tcn.ru/products/taxis/index.htm Taxon-independent TRACY http://www.csdl.tamu.edu/FLORA/input/inputsys.html Botany UCD HMS http://herbarium.ucdavis.edu/herbaccess/databaseinfo.htm Botany of this nation. It is estimated that these collections towards building a ‘National Natural History Manage- together house more than 10–15 million specimens. Also, ment Information InfraStructure (NHMIS)’. information on availability and occurrence of these speci- mens has been documented through hundreds of mapping and survey projects during the last 50 years. SAMPADA: An Indian initiative However, many of these collections are in a bad condi- tion, for want of appropriate funding and better manage- In order to accelerate efforts to computerize the biologi- ment. The biological collections community in India, like cal collections in India, National Chemical Laboratory its counterparts in other regions of the globe, is frag- (NCL), Pune, as part of its initiative in the field of biodi- mented because of taxonomic boundaries, project scope versity informatics, developed SAMPADA. One of main (survey vs collection, etc.). Until recently, there have not aims of this activity was to develop cost-efficient, easy- been any significant efforts made towards computeriza- to-use, and interoperable tools for biological collections tion of biological collections in India. One of the major located in the developing world. issues is unavailability of required funds and lack of SAMPADA is a Sanskrit word, which means ‘natural interest of R&D managers in better maintaining our rich wealth’ or ‘heritage’. It is an attempt to assist individual natural heritage through collection holdings. This is fur- biological collections to develop their own repository ther aggravated by the fact that there is no pressure/ database. SAMPADA was developed keeping in view demand for the same from the user community. that it should facilitate data acquisition and storage, mod- Given these facts, there lies great potential for under- erate query support, unique specimen and collection- taking activities in this area. Such efforts would prove as specific barcode, digitization of specimen, restrictive data a bridge between holders of biological collections and the access to prevent mishandling of data/information, easy- users, and greater and efficient access to information to-use with bare minimum infrastructure. about specimens or observations. This would provide Considering that many collections/museums from deve- access to ready-to-use baseline data for a variety of stu- loping and under-developed nations do not have state-of- dies. Hence, initiating consorted efforts towards digiti- the-art computing infrastructure, the current version of zation of biological collections would be the first step SAMPADA is intended to be used as a stand-alone pack- 36 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
  • 4. GENERAL ARTICLES age by individual museums/collections. Though used in mation handling. Netbeans 3.3 is used for interface deve- a distributed manner because of its uniform database lopment. A combination of these two provides scalability structure, SAMPADA would achieve its goal of data/ and platform independence to the package. Public domain information in easily exchangeable format, thus achieving package InstallAnyWhere (http://www.installanywhere. interoperability with other databases of similar nature. com/) is used for creating install-ready version of the Closer interaction with subject experts and museum application. Beta-users tested the system on their own curators revealed that information on parameters such as PCs. Current version of SAMPADA would run on any museum details, collector/identifier details, repository Pentium II PC (350 MHz or more) with minimum of information, field data, systematics, synonym, common 64 MB of RAM. Operating systems required for SAM- name, images of specimen, additional notes and references PADA can be Microsoft Windows 98/ME/NT/2000. It for the species, must be collected through this package. also requires Java Development kit and Java Media Frame- Data structure of SAMPADA consists of ten interrelated work. Sufficient care has been taken in the current ver- sections (referred to as tables), encompassing information sion of SAMPADA to provide enough security and on the above-referred parameters. Both between and restrictive access to data entered. within the tables, relationships have been created to faci- litate the organization of information. Figure 1 shows the Generation of barcode overall structure of the database, including shared rela- tionships. MySQL (http://www.mysql.org/), a public Generation of a unique barcode for each individual speci- domain RDBMS is used for database creation and infor- men is one of the major features of SAMPADA. This Figure 1. SAMPADA database structure and interrelationships between tables. CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003 37
  • 5. GENERAL ARTICLES would help locate the specimen with ease by curators every time. Data gathered from specimens and biblio- and researchers. This shall prevent potential trafficking graphic sources, names, authors, synonyms, common of the specimens. For the current exercise Code 128, names, types, ecological details, etc. are formatted into which is capable of encoding the full ASCII 128 chara- different categories, saving vast amount of time with cter set, the 128 extended ASCII character set and four fussy and complex data sorting and formatting. Hence, non-data function characters is implemented. It allows collections/museums can use SAMPADA to index their numeric data to be represented in a computer double- collections and scientifically credible taxonomic informa- density mode, two data digits for every symbol character. tion. Enriched with information, SAMPADA would Barcode for each specimen is generated as a combination become a tool for accessing knowledge about accepted of geographic location of the museum/collection and scientific names, synonyms, common names and authen- accession number of the specimen in the respective col- ticate systematics of specimens within the museum/col- lection (Figure 2). It was felt that with such a schematic, lection. creation of the same barcode for two different specimens could be prevented. Figure 3 shows the barcode gene- rated for sample specimen. Currently, fields relevant to Digitizing specimen location of the specimen are encoded to generate a uni- One of the major objectives of developing SAMPADA que identifier for the collection sample. However, it is was to facilitate digitization of specimens themselves. proposed to encode the entire scientific content in a com- The program facilitates archiving five images for each pact format, which will be available with global standard. specimen (Figure 5). These images can be line diagrams, As advanced bar coding systems are available, today scanned photographs, video and/or audio clippings of the encoded data can be portable in this format, hence over- specimen, which would prove helpful in visual identi- coming the space issue in the digitized world itself. fication of the specimen based on characteristics as cap- tured in the graphics. Taxonomic knowledge management The systematics section offers fields for a complete taxo- Easy to use nomic tree of the species from kingdom to species level Based on the various tests conducted with beta-users, it and, where applicable, sub-specific designations (Figure could now be concluded that the overall performance of 4). Publication details from which classification has been the system was satisfactory. Beta-users consist of poten- validated/referred can be entered in the data source table. tial experts, scientists, academicians, software profes- A synonym and common name of the species would be sional, etc. Positive responses received from them collated through synonym and common name tables res- indicate the high level of user-friendliness of the system. pectively. For multiple specimens of the same species, The benefit of SAMPADA is efficient data entry and data classification details need not be entered repetitively framework that help in editing data in a logical and step- by-step manner. Currently, around 20 collections/ muse- ums are using SAMPADA, which is available free of cost to R&D, academic and non-profit collection facilities. It can be downloaded or requested at http://www. ncbi.org.in/sampada. Feasibility of extending the use of SAMPADA on a global scale is being explored, and nec- essary modifications are being incorporated in the current version. A call for national information infrastructure The current version of SAMPADA (ver. 2.0) is part of a broader vision and strategy to develop national NHMIS (Figure 6) for developing and under-developed nations. Use of this stand-alone version of SAMPADA by various collections would allow exchange/sharing of data amongst collection facilities, as collected information would be in a uniform and standardized format. It is envisaged that once individual collections would automate their reposi- Figure 2. Scheme used for barcode generation for each specimen. tory information using SAMPADA, integrating these 38 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
  • 6. GENERAL ARTICLES individual information bases at a national level could However, developing such a national information generate a collective mega database. This would aid sci- infrastructure facility calls for concerted efforts on the entists, researchers, ecologists, biologists and environ- part of all concerned, viz. curators, taxonomists, manag- mentalists as well as common public in retrieving ers of collection/museum facilities and users. The follow- information about the specimen of their interest. ing section explores possible blocks and barriers to bring Possible architecture for NHMIS includes (a) single the dream of ‘virtually connected collections/museums’ client/server database by all collections, (b) central sum- into reality. mary systems, (c) central gateway to distributed data- bases (common access system), (d) peer-to-peer databases Blocks and barriers (multiple Z39.50 servers and clients), and (e) web direc- tory pointing to data sources. In order to achieve this One of the major blocks that curators often talk about is goal, we are planning to develop a central repository unavailability of required funds to undertake digitization package, which would work at the server end (Figure 6). activities. In order to overcome the financial crunch, big This would facilitate museums/collections with Internet collections are becoming independent institutions15,16. connectivity to directly utilize resources available at the However, smaller collections as well as even big ones central repository. Currently, the system is working at the from developing and under-developed nations cannot institute level; as the number of users increases, the afford to become independent to overcome the financial encoded data can be made available at the country level problem. Museum funding continues to decline and many or even at the global level. In one way this system will be institutions survive on starvation budgets; thus comput- instrumental to map the distribution of species in our erization is of lower priority compared to other urgent subcontinent. infrastructure needs. The option of minimal management Figure 3. Unique barcode generated for each specimen. CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003 39
  • 7. GENERAL ARTICLES Figure 4. SAMPADA facilitates collation of detailed systematics knowledge. of collections is often adopted, leading to a collection/ natural history collections in biodiversity conservation museum often becoming orphaned. The result is a tragic, remains unnoticed. We see potential in receiving more irreplaceable loss of biodiversity data. Financing the funding from national governments, by leveraging on creation of such information systems is beyond the access to museum data. However, there seems to be mis- resources of the institutions that possess the knowledge led conviction amongst curators about issues related to base of specimens and expertise. Further, funding agen- intellectual property rights, and wider and free dissemi- cies consider the task insufficiently innovative. However, nation of data/information. Emergence of more European the irony is that a country stands to benefit immensely and US collections/museums on the web, demonstrates from such information system. Government and interna- that enough safeguard mechanisms, policies and legis- tional development agencies should realize that investing lations are in place with respect to intellectual property now in computerizing systematic biology collections rights, appropriate acknowledgements, credits and mini- would pay dividends now and in the future. mal misuse of data/information. These could further be However, we strongly believe that an equally impor- worked out considering the mega diverse nature of our tant problem is that of culture and attitude amongst many biotic resources. However, what is required is proactive of our collection facilities. Majority of the museum faci- action and teaming together without any preconceived lities strongly resist becoming multidisciplinary in their excuses to start planning and implementing digitization approach and opening their gates to wider user-commu- activities. nity. Reasons for such a state are rooted in insufficient infrastructure facilities, as well as lack of capacity (train- ing) and career-building opportunities for those working Potentials and recommendations in these facilities. This is further aggravated by lack of required encouragement and support from managements For NHMIS to achieve its objective of making data on and potential funding agencies, which is forcing this biological collections available to its user community community to shrink within its own cocoon. across the globe, proper planning, phased implementation In today’s world of competitive globalization, success and collaborative efforts are the keys to success. A depends on how well one teams up together. Contrary to National Workshop on Information Technology in Bio- this fact, the museum/collection community in our part of logical Collections Management held at NCL, Pune dur- the globe is fragmented. Due to lack of collaborative ing 10–11 January 2002 discussed the strategies and efforts amongst the community, the significant role of action plan for digitizing biological collections in the 40 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003
  • 8. GENERAL ARTICLES Figure 5. Archiving of digitized images of specimen. Schematics for Next Generation SAMPADA Dissemination Processing Acquisition Offline Museums / Collections / Collections SAMPADA (offline) Custodians CDROM LDB Development LDB Development Offline submission SAMPADA Regional / SAMPADA Central Regional acquisition multilingual Regional Mirroring SAMPADA through Virtual dissemination Server Regional Network of museums Node Node Integrated & Processed Datasets WEB WEB Approved Datasets Harvesting Data Submission Incoming / Pending Through DEI Datasets Online Direct DEI Online Collections / Submission Collections Net Users DEI – Data Entry Interface LDB – Local Database Builder Figure 6. Schematics of Next Generation of SAMPADA. country and made recommendations specific to develop- collaborative initiatives for digitalizing the collection are ment of a national information infrastructure for natural imperative as costs of digitalization are beyond the budget history collections17. of individual institutions. Concerted efforts are needed to It is important that collections become multidiscipli- seek technical and financial support from national, multi- nary in research, and show greater willingness to colla- national, international agencies as well as corporate houses borate with external researchers. Museum staff should be for achieving the task of NHMIS. This would ensure wider encouraged to seek research collaborations, both within participation of various agencies (academic, research agen- and in the wider community. National and international cies and universities) into this programme. CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003 41
  • 9. GENERAL ARTICLES Initially, NHMIS may concentrate to collate knowledge (e) privacy rights of collectors and researchers. Until about biological collections (dead plant and animal speci- flaws in the network safeguards are fixed, data requests mens). However, at later stages its scope should be can be handled on a case-by-case basis. expanded to collate information about living collections (botanical gardens, zoological parks, etc.). Interactive Conclusion identification keys, which consist of digital images and Rapid biological inventories would provide powerful associated text, also allow museums to increase accessi- means to bridge information gaps leading to fool-proof bility to their collections. Biological collections data policy making. The advent of new information technolo- along with remote sensing, geographic information sys- gies allows natural history museums to digitize collec- tems, and geo-referencing tools would help to develop tions and to make associated scientific data accessible to predictive models for the distribution of rare and threat- a wide audience. These technologies enable the sharing ened species, management plans, models for restoration, of data with parties that have provided collection material, and monitoring protocols for protected areas when repo- thereby closing the digital divide. Database and imaging sitory information from various collection holders is inte- technologies can also transform enormous collections grated into a single collated database. into innovative tools for identification in the field. Along with web-based dissemination, CD-ROM disse- Natural history museums should collect and dissemi- mination of digitized information is essential. It was sug- nate information faster. The economic forces that drive gested that facility for building customized reports should unsustainable natural-resource depletion are strong and be provided while disseminating information. In order to be are gaining speed. Rapid biological inventories provide able to exchange/share information collated through Indian time-sensitive, accurate data for areas of high conserva- NHMIS, with those of other initiatives of similar nature, tion concern. By actively forging relationships with govern- the issue of compatibility and interoperability may be given ment officials, scientists and community leaders, natural serious consideration, especially those for taxonomic, eco- history museums can increase the number and impact of logical and geographical knowledge management. concurrent rapid biological inventories. In order to pursue the goal of NHMIS, brainstorming discussion among experts, technocrats and users may be 1. Duckworth, W. D., Genoways, H. H. and Rose, C. L., in Preserv- held at regular intervals (atleast once a year). Review of ing our Natural Science Collections: Chronicle of our Environ- the progress made in this direction can also be undertaken mental Heritage, National Institute for the Conservation of at such meetings. It is important that a Memorandum of Cultural Property, Washington DC, 1993. Understanding (MOU) be developed and signed among 2. Wilson, E. O., in The diversity of Life, (Reissue edn), W.W. Nor- parties participating in NHMIS. Such MOU may cover ton, New York, 1999. 3. PCAST (President’s Committee of Advisors on Science and Tech- issues related to information exchange/sharing, owner- nology), in Teaming with Life: Investigating in Science to Under- ship, intellectual property rights, commitments, financial stand and Use America’s Living Capital, Office of the President, sharing, etc. To achieve the goal of NHMIS, capacity- Washington, D.C., 1998. building training programmes are needed for collection 4. McCarter, J., Boge, G. and Darlow, G., Science, 2001, 294, 2099– managers, curators and staff. Such training programmes/ 2101. 5. Nature Briefing, Nature, 1998, 394, 118. workshops may be conducted at regular intervals. Funding 6. Balckmore, S., Science, 1996, 274, 63–64. for such activities can be sought from national/regio- 7. Waggoner, G. S, Frondorf, A., Gomon, J. and Schanse, J. L., in nal/global agencies interested and working on biodiver- Final Report of the National Electronic Natural History Museum sity-related issues. Reinvention Laboratory: A Framework for Next Generation Capa- For taxonomic knowledge management, five-kingdom bilities (ed. D’Erchia, T.), Denver, Colorado, 2000, p. 45. 8. National Science Board, in Environmental Science and Engineer- classification system must be used in SAMPADA. For ing for the 21st Century – The Role of the National Science Founda- this, feasibility of integrating the already developed sys- tion (Interim Report), February 2000. Available at http://www.nsf. tems such as Integrated Taxonomic Information System gov/pubs/2000/nsb0022/reports/nsb0022.pdf (ITIS) or similar systems into SAMPADA may be 9. Butler, D., Gee, H. and Macilwain, C., Nature, 1998, 394, 115–117. explored. Discussions may be initiated with such inter- 10. Miller, S., Science, 2001, 293, 1433. 11. Arnold, N., Nature, 1998, 394, 517. national initiatives for potential collaborations. 12. Butler, D., ibid, 1999, 401, 104. Due credits and acknowledgements should be given to 13. Lane, M. A., Ann. Mo. Bot. Gard., 1996, 83, 536–545. data collectors, holders and curators as well as agencies. 14. Pushpangadan, P. and Nair, K. N., Curr. Sci., 2001, 80, 631–635. Before museums permit sensitive data fields (e.g. collec- 15. Capparella, A., Nature, 1999, 400, 207. tor, date, locality and distribution and reproductive infor- 16. Graves, G. R., Tree, 2000, 15, 374. 17. In Report of the National Workshop on Information Technology in mation) for entire collections to be posted on the web, Biological Collections Management, NCL, Pune, 2002, p. 26. legally binding safeguards and provisions are needed. Some of these include (a) intellectual property rights, ACKNOWLEDGEMENTS. We thank the Director, NCL, Pune for support and guidance. (b) commercial use and licensing, (c) acknowledgement in the publication, (d) endangered species data and Received 7 August 2002; revised accepted 18 September 2002 42 CURRENT SCIENCE, VOL. 84, NO. 1, 10 JANUARY 2003