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Data Mining Cluster Analysis: Basic Concepts  and Algorithms Lecture Notes for Chapter 8 Introduction to Data Mining by Tan, Steinbach, Kumar © Tan,Steinbach, Kumar    Introduction to Data Mining    4/18/2004
What is Cluster Analysis? ,[object Object],Inter-cluster distances are maximized Intra-cluster distances are minimized
Applications of Cluster Analysis ,[object Object],[object Object],[object Object],[object Object],Clustering precipitation in Australia
What is not Cluster Analysis? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Notion of a Cluster can be Ambiguous How many clusters? Four Clusters   Two Clusters   Six Clusters
Types of Clusterings ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Partitional Clustering Original Points A Partitional  Clustering
Hierarchical Clustering Traditional Hierarchical Clustering Non-traditional Hierarchical Clustering Non-traditional Dendrogram Traditional Dendrogram
Other Distinctions Between Sets of Clusters ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Types of Clusters ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Types of Clusters: Well-Separated ,[object Object],[object Object],3 well-separated clusters
Types of Clusters: Center-Based ,[object Object],[object Object],[object Object],4 center-based clusters
Types of Clusters: Contiguity-Based ,[object Object],[object Object],8 contiguous clusters
Types of Clusters: Density-Based ,[object Object],[object Object],[object Object],6 density-based clusters
Types of Clusters: Conceptual Clusters ,[object Object],[object Object],[object Object],2 Overlapping Circles
Types of Clusters: Objective Function ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Types of Clusters: Objective Function … ,[object Object],[object Object],[object Object],[object Object]
Characteristics of the Input Data Are Important ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Clustering Algorithms ,[object Object],[object Object],[object Object]
K-means Clustering ,[object Object],[object Object],[object Object],[object Object],[object Object]
K-means Clustering – Details ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Two different K-means Clusterings Original Points Sub-optimal Clustering Optimal Clustering
Importance of Choosing Initial Centroids
Importance of Choosing Initial Centroids
Evaluating K-means Clusters ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Importance of Choosing Initial Centroids …
Importance of Choosing Initial Centroids …
Problems with Selecting Initial Points ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
10 Clusters Example Starting with two initial centroids in one cluster of each pair of clusters
10 Clusters Example Starting with two initial centroids in one cluster of each pair of clusters
10 Clusters Example Starting with some pairs of clusters having three initial centroids, while other have only one.
10 Clusters Example Starting with some pairs of clusters having three initial centroids, while other have only one.
Solutions to Initial Centroids Problem ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Handling Empty Clusters ,[object Object],[object Object],[object Object],[object Object],[object Object]
Updating Centers Incrementally ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Pre-processing and Post-processing ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Bisecting K-means ,[object Object],[object Object]
Bisecting K-means Example
Limitations of K-means ,[object Object],[object Object],[object Object],[object Object],[object Object]
Limitations of K-means: Differing Sizes Original Points K-means (3 Clusters)
Limitations of K-means: Differing Density Original Points K-means (3 Clusters)
Limitations of K-means: Non-globular Shapes Original Points K-means (2 Clusters)
Overcoming K-means Limitations Original Points K-means Clusters ,[object Object],[object Object]
Overcoming K-means Limitations Original Points K-means Clusters
Overcoming K-means Limitations Original Points K-means Clusters
Hierarchical Clustering  ,[object Object],[object Object],[object Object]
Strengths of Hierarchical Clustering ,[object Object],[object Object],[object Object],[object Object]
Hierarchical Clustering ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Agglomerative Clustering Algorithm ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Starting Situation  ,[object Object],Proximity Matrix p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
Intermediate Situation ,[object Object],C1 C4 C2 C5 C3 Proximity Matrix C2 C1 C1 C3 C5 C4 C2 C3 C4 C5
Intermediate Situation ,[object Object],C1 C4 C2 C5 C3 Proximity Matrix C2 C1 C1 C3 C5 C4 C2 C3 C4 C5
After Merging ,[object Object],C1 C4 C2  U  C5 C3 ?  ?  ?  ?    ? ? ? C2  U  C5 C1 C1 C3 C4 C2  U  C5 C3 C4 Proximity Matrix
How to Define Inter-Cluster Similarity Similarity? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Proximity Matrix p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
How to Define Inter-Cluster Similarity Proximity Matrix ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
How to Define Inter-Cluster Similarity Proximity Matrix ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
How to Define Inter-Cluster Similarity Proximity Matrix ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
How to Define Inter-Cluster Similarity Proximity Matrix ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],  p1 p3 p5 p4 p2 p1 p2 p3 p4 p5 . . . . . .
Cluster Similarity: MIN or Single Link  ,[object Object],[object Object],1 2 3 4 5
Hierarchical Clustering: MIN Nested Clusters Dendrogram 1 2 3 4 5 6 1 2 3 4 5
Strength of MIN Original Points ,[object Object],Two Clusters
Limitations of MIN Original Points ,[object Object],Two Clusters
Cluster Similarity: MAX or Complete Linkage ,[object Object],[object Object],1 2 3 4 5
Hierarchical Clustering: MAX Nested Clusters Dendrogram 1 2 3 4 5 6 1 2 5 3 4
Strength of MAX Original Points ,[object Object],Two Clusters
Limitations of MAX Original Points ,[object Object],[object Object],Two Clusters
Cluster Similarity: Group Average ,[object Object],[object Object],1 2 3 4 5
Hierarchical Clustering: Group Average Nested Clusters Dendrogram 1 2 3 4 5 6 1 2 5 3 4
Hierarchical Clustering: Group Average ,[object Object],[object Object],[object Object],[object Object],[object Object]
Cluster Similarity: Ward’s Method ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Hierarchical Clustering: Comparison Group Average Ward’s Method MIN MAX 1 2 3 4 5 6 1 2 5 3 4 1 2 3 4 5 6 1 2 5 3 4 1 2 3 4 5 6 1 2 5 3 4 1 2 3 4 5 6 1 2 3 4 5
Hierarchical Clustering:  Time and Space requirements ,[object Object],[object Object],[object Object],[object Object],[object Object]
Hierarchical Clustering:  Problems and Limitations ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
MST: Divisive Hierarchical Clustering ,[object Object],[object Object],[object Object],[object Object]
MST: Divisive Hierarchical Clustering ,[object Object]
DBSCAN ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DBSCAN: Core, Border, and Noise Points
DBSCAN Algorithm ,[object Object],[object Object]
DBSCAN: Core, Border and Noise Points Original Points Point types:  core ,  border  and  noise Eps = 10, MinPts = 4
When DBSCAN Works Well Original Points ,[object Object],[object Object],Clusters
When DBSCAN Does NOT Work Well Original Points (MinPts=4, Eps=9.75).   (MinPts=4, Eps=9.92) ,[object Object],[object Object]
DBSCAN: Determining EPS and MinPts ,[object Object],[object Object],[object Object]
Cluster Validity  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Clusters found in Random Data Random Points K-means DBSCAN Complete Link
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Different Aspects of Cluster Validation
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Measures of Cluster Validity
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Measuring Cluster Validity Via Correlation
Measuring Cluster Validity Via Correlation ,[object Object],Corr = -0.9235 Corr = -0.5810
[object Object],Using Similarity Matrix for Cluster Validation
Using Similarity Matrix for Cluster Validation ,[object Object],DBSCAN
Using Similarity Matrix for Cluster Validation ,[object Object],K-means
Using Similarity Matrix for Cluster Validation ,[object Object],Complete Link
Using Similarity Matrix for Cluster Validation DBSCAN
[object Object],[object Object],[object Object],[object Object],[object Object],Internal Measures: SSE
Internal Measures: SSE ,[object Object],SSE of clusters found using K-means
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Framework for Cluster Validity
[object Object],[object Object],[object Object],Statistical Framework for SSE
[object Object],Statistical Framework for Correlation Corr = -0.9235 Corr = -0.5810
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Internal Measures: Cohesion and Separation
Internal Measures: Cohesion and Separation ,[object Object],[object Object],1 2 3 4 5    m 1 m 2 m K=2 clusters: K=1 cluster:
[object Object],[object Object],[object Object],Internal Measures: Cohesion and Separation cohesion separation
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Internal Measures: Silhouette Coefficient
External Measures of Cluster Validity: Entropy and Purity
[object Object],[object Object],[object Object],Final Comment on Cluster Validity

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Chap8 basic cluster_analysis