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Near Real Time Monitoring of Habitat Change Using
Neural Network and a MODIS data


          Louis Reymondin – Alejandro Coca – Andy Jarvis –
         Karolina Argote - Jerry Touval – Andres Perez-Uribe –
                             Mark Mulligan
What is Terra-

Terra-i is a system of habitat changes monitoring that uses different
mathematical models that combine vegetation data (MODIS NDVI) and
precipitation data (TRMM) to detect deviations from the natural cycle of
the vegetation over time and thus antrophogenic impacts on natural
ecosystems.



        It has maps of habitat loss every 16 days at the continental
                level with 250 meters of spatial resolution.
Terra- goals
                To use high-frequency imaging and moderate
                           spatial resolution for ...


 Monitoring the conversion of natural habitats in near real time. (Results 2
   months after the date of capture)

 Have a continental coverage of all types of habitat.

 Be a support for government agencies in making decisions.

 Quantifying habitat conversion rates and make analysis of trends from

   2004 to date.

 Monitor the impact on protected areas in Latin America.
Terra- approach
 The intensity of vegetation greenness is a natural cycle that depends on climatic
 factors (precipitation, temperature), site variables (type of vegetation, soil
 characteristics) and disturbances (natural or anthropogenic).




Terra-i is a model to predict the evolution of vegetation greenness intensity, based on measures
 of vegetation behavior in time and current weather measurements to detect significant habitat
                                            changes.
                                               .
Inputs data
1. Vegetation Index (MOD13Q1 MODIS Product , 16 days, 250m)




         Normalized difference vegetation index (NDVI) represents the amount and
        vigor of vegetation. In each area the values ​ are closely related to vegetation
          type and climatic conditions as well as the predominant land use pattern.
Tiles MODIS level analysis




         Processed Terra-i data           Incoming Test Tiles / Terra-i

  This gives us greater automation of the process, synchronizing the stages
download, pre-processing of MODIS data, Terra-i processing load and soon final
                      results in the map server and FTP.
Input data
2. Precipitation Data of the Tropical Rainfall Measuring Mission(3hours, 28km)




              TRMM is led by NASA and the Japan Aerospace Exploration Agency
                    (JAXA). It monitors and studies tropical and subtropical
               rainfall, between 35 º N and 35 º S. It was released on November
                                    27th, 1997 from Japan.
Research methodology overview

     The methodology can be split into two main steps:

     The training step (using data from 2000 to 2004)
        • Models are trained in order to find the relationship
1.        between recent precipitation and the changes in the
          color of the vegetation (for different vegetation types)


     The detection step (using data from 2004 to present)
        • The trained models output are compared with the
2.        satellite measurements in order to detect anomalies in
          the vegetation state.
Model training
                             NDVI and QA MODIS data MOD13Q1, Precipitation
                                            (TRMM 3b42)
                                             (2000-2004)
                                                                                To reduce the noise present
                                        Time series gap-filling and             in the data
                                               smoothing
To reduce processing                                                            (clouds, atmospheric
duration, the NDVI time series                 Clustering                       variations, shadows…)
                                                K-Means
with the same trends during the
years are grouped together             Random pixels sampling for
                                             each cluster



                                         Neural network training

                                                                             Original NDVI data   Cleaned NDVI data
Anomaly detection
                                       NDVI and QA MODIS data
                                     MOD13Q1, Precipitation (TRMM)
                                             (2004-2011)


                                         Time series gap-filling and
                                                smoothing




                                                                          NDVI Prediction
                                                                         from 2004 to 2011




           Calibration using habitat                                          Difference between the NDVI sensor
        changes maps generated with                         maps
                                                                             measurement and the NDVI predicted
        Landsat satellite images (30m)                    of change
                                                                                     by the neural network
                                                         probabilities


                                                                                                   NDVI increase
Rules
                                                                                                   NDVI decrease
            Vegetation changes                    Clasification of                                (anthropogenic)
                  maps                                change              Results
                                                                                                      Floods

                                                                                                     Drought
Methodology – Change detection
The goal of the model is to predict what is the NDVI value at the date t taking as input
the NDVI values at t-1, t-2 … t-n and the previous rainfall.



                                                     INPUTS: Past NDVI (MODIS 13Q1)
                                                             Previous rainfall (TRMM 3b42)
                                                     OUTPUT: 16 day predicted NDVI




Prediction
     Multilayer perceptron
     Bayesian Neural Network (BNN)

Model trainning and noise approximation                                         change

     Scaled Conjugate Gradient (SCG)
     Gaussian noise

Input automatic selection
     Automatic relevance determination (ARD)
Calibration with Landsat Images

                          2004




                          2009




                As Terra-i generates maps of conversion
                probabilities, we use Landsat images in
                order to calibrate the results and select the
                most appropriate probability threshold for
                each    cluster     to    generate     binary
                changed/unchanged maps.
Terra-i results comparation
                         with local models
Terra-i results were compared with deforestation data produced by the National Institute
for Space Research Instituto Nacional de Pesquisas Espaciais (INPE) from 2004 to 2009
through monitoring systems as PRODES and DETER.

PRODES
The Project of estimation of deforestation in the Brazilian Amazon (PRODES) generated
estimations from 2003 using a digital classification system with Landsat images (30m).

DETER
DETER is a near real time deforestation detection system. It publishes fortnightly
deforestation alerts for the Brazilian Amazon using MODIS images (500m).




           The comparison shows a high correlation between Terra-i and PRODES
                                        systems.
Comparison with PRODES
                           Comparison with PRODES
% of matching detections




                              % of PRODES detection
                              within a MODIS pixels
The Software
Results
2004 – 2012
Habitat Loss in
Colombia 2004-2011


            Annual Rate : 118,026 Ha/year
            Total Loss:   944,206 Ha


        *
Habitat Loss in
The Biological corridor in Meta
Habitat Loss in
Brasil 2004-June 2011


              Annual Rate: 1,789,138 Ha/year
              Total Loss:  13,418,538 Ha


          *
Road impact assessment
The   Trans-Chaco Highway (2002-2006), Paraguay
Road impact assessment
                         The Trans-Chaco Highway, Paraguay

                                                  Conclusions

  • Very high levels of deforestation pre- and post- road construction
  • But > 300% increase in deforestation rates since road finished, with a footprint that
      likely goes beyond 50km buffer



Road:                                     Trans-Chaco Highway
Project period:                                      2002-2006
Average pre-road deforestation rate:                     23,000
Average post-road deforestation rate:           97,000 (+319%)
Year of peak deforestation:                                2010
Footprint (modal deforestation distance):             30-40km
Improve more and more our system by developing methodologies for
              analyzing the information generated.
Deforestation patterns
Future Deforestation Scenarios
                   BR-364 Road, Brasil
                             PROOF OF CONCEPT




Base map                 Potential deforestation at T=0         Potential deforestation at T=150




   Predicted deforestation                          Actual deforestation (Terra-i)
Integration Terra-i with others
                            Policy Support Systems
•   Terra-i can also be used within the WaterWorld and Co$ting Nature Policy Support Systems to

    understand the impact of recent land cover change on hydrology and the production and

    delivery of ecosystem services.

•   Data: http://geodata.policysupport.org/




                 Water flows                                        Erosion
www.terra-i.org
&
“The best way improve a system is to get people to use it”
                                          Dr. Mulligan (Kings College of London)
Conclusions
   Terra-i is:
A mapping and monitoring system for rapid assessment of land cover conversion at a medium scale
(250m).

A tool for monitoring conversion of habitat at continental, national and regional level in close to real
time.

A tool for understanding the effectiveness of protected areas and other conservation measures in
stabilizing or reducing land cover conversion.

A spatial support system for decision making in public policy and private development initiatives.
Through its linkage with WaterWorld and Co$ting Nature, a system for understanding the likely impacts
of near real-time land cover change on a wide range of ecosystem services.



   Terra-i isn’t:
X Detailed monitoring tool in local level. For this it requires second-level monitoring (with high
resolution images) and third level (field data).

X A system to monitor degradation.
Contact us:
l.reymondin@cgiar.org
a.coca@cgiar.org
www.terra-i.org

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Near Real Time Habitat Change Monitoring Using Neural Networks & MODIS

  • 1. Near Real Time Monitoring of Habitat Change Using Neural Network and a MODIS data Louis Reymondin – Alejandro Coca – Andy Jarvis – Karolina Argote - Jerry Touval – Andres Perez-Uribe – Mark Mulligan
  • 2. What is Terra- Terra-i is a system of habitat changes monitoring that uses different mathematical models that combine vegetation data (MODIS NDVI) and precipitation data (TRMM) to detect deviations from the natural cycle of the vegetation over time and thus antrophogenic impacts on natural ecosystems. It has maps of habitat loss every 16 days at the continental level with 250 meters of spatial resolution.
  • 3. Terra- goals To use high-frequency imaging and moderate spatial resolution for ...  Monitoring the conversion of natural habitats in near real time. (Results 2 months after the date of capture)  Have a continental coverage of all types of habitat.  Be a support for government agencies in making decisions.  Quantifying habitat conversion rates and make analysis of trends from 2004 to date.  Monitor the impact on protected areas in Latin America.
  • 4. Terra- approach The intensity of vegetation greenness is a natural cycle that depends on climatic factors (precipitation, temperature), site variables (type of vegetation, soil characteristics) and disturbances (natural or anthropogenic). Terra-i is a model to predict the evolution of vegetation greenness intensity, based on measures of vegetation behavior in time and current weather measurements to detect significant habitat changes. .
  • 5. Inputs data 1. Vegetation Index (MOD13Q1 MODIS Product , 16 days, 250m) Normalized difference vegetation index (NDVI) represents the amount and vigor of vegetation. In each area the values ​ are closely related to vegetation type and climatic conditions as well as the predominant land use pattern.
  • 6. Tiles MODIS level analysis Processed Terra-i data Incoming Test Tiles / Terra-i This gives us greater automation of the process, synchronizing the stages download, pre-processing of MODIS data, Terra-i processing load and soon final results in the map server and FTP.
  • 7. Input data 2. Precipitation Data of the Tropical Rainfall Measuring Mission(3hours, 28km) TRMM is led by NASA and the Japan Aerospace Exploration Agency (JAXA). It monitors and studies tropical and subtropical rainfall, between 35 º N and 35 º S. It was released on November 27th, 1997 from Japan.
  • 8. Research methodology overview The methodology can be split into two main steps: The training step (using data from 2000 to 2004) • Models are trained in order to find the relationship 1. between recent precipitation and the changes in the color of the vegetation (for different vegetation types) The detection step (using data from 2004 to present) • The trained models output are compared with the 2. satellite measurements in order to detect anomalies in the vegetation state.
  • 9. Model training NDVI and QA MODIS data MOD13Q1, Precipitation (TRMM 3b42) (2000-2004) To reduce the noise present Time series gap-filling and in the data smoothing To reduce processing (clouds, atmospheric duration, the NDVI time series Clustering variations, shadows…) K-Means with the same trends during the years are grouped together Random pixels sampling for each cluster Neural network training Original NDVI data Cleaned NDVI data
  • 10. Anomaly detection NDVI and QA MODIS data MOD13Q1, Precipitation (TRMM) (2004-2011) Time series gap-filling and smoothing NDVI Prediction from 2004 to 2011 Calibration using habitat Difference between the NDVI sensor changes maps generated with maps measurement and the NDVI predicted Landsat satellite images (30m) of change by the neural network probabilities NDVI increase Rules NDVI decrease Vegetation changes Clasification of (anthropogenic) maps change Results Floods Drought
  • 11. Methodology – Change detection The goal of the model is to predict what is the NDVI value at the date t taking as input the NDVI values at t-1, t-2 … t-n and the previous rainfall. INPUTS: Past NDVI (MODIS 13Q1) Previous rainfall (TRMM 3b42) OUTPUT: 16 day predicted NDVI Prediction Multilayer perceptron Bayesian Neural Network (BNN) Model trainning and noise approximation change Scaled Conjugate Gradient (SCG) Gaussian noise Input automatic selection Automatic relevance determination (ARD)
  • 12. Calibration with Landsat Images 2004 2009 As Terra-i generates maps of conversion probabilities, we use Landsat images in order to calibrate the results and select the most appropriate probability threshold for each cluster to generate binary changed/unchanged maps.
  • 13. Terra-i results comparation with local models Terra-i results were compared with deforestation data produced by the National Institute for Space Research Instituto Nacional de Pesquisas Espaciais (INPE) from 2004 to 2009 through monitoring systems as PRODES and DETER. PRODES The Project of estimation of deforestation in the Brazilian Amazon (PRODES) generated estimations from 2003 using a digital classification system with Landsat images (30m). DETER DETER is a near real time deforestation detection system. It publishes fortnightly deforestation alerts for the Brazilian Amazon using MODIS images (500m). The comparison shows a high correlation between Terra-i and PRODES systems.
  • 14. Comparison with PRODES Comparison with PRODES % of matching detections % of PRODES detection within a MODIS pixels
  • 18. Habitat Loss in Colombia 2004-2011 Annual Rate : 118,026 Ha/year Total Loss: 944,206 Ha *
  • 19. Habitat Loss in The Biological corridor in Meta
  • 20. Habitat Loss in Brasil 2004-June 2011 Annual Rate: 1,789,138 Ha/year Total Loss: 13,418,538 Ha *
  • 21. Road impact assessment The Trans-Chaco Highway (2002-2006), Paraguay
  • 22. Road impact assessment The Trans-Chaco Highway, Paraguay Conclusions • Very high levels of deforestation pre- and post- road construction • But > 300% increase in deforestation rates since road finished, with a footprint that likely goes beyond 50km buffer Road: Trans-Chaco Highway Project period: 2002-2006 Average pre-road deforestation rate: 23,000 Average post-road deforestation rate: 97,000 (+319%) Year of peak deforestation: 2010 Footprint (modal deforestation distance): 30-40km
  • 23. Improve more and more our system by developing methodologies for analyzing the information generated.
  • 25. Future Deforestation Scenarios BR-364 Road, Brasil PROOF OF CONCEPT Base map Potential deforestation at T=0 Potential deforestation at T=150 Predicted deforestation Actual deforestation (Terra-i)
  • 26. Integration Terra-i with others Policy Support Systems • Terra-i can also be used within the WaterWorld and Co$ting Nature Policy Support Systems to understand the impact of recent land cover change on hydrology and the production and delivery of ecosystem services. • Data: http://geodata.policysupport.org/ Water flows Erosion
  • 28. & “The best way improve a system is to get people to use it” Dr. Mulligan (Kings College of London)
  • 29. Conclusions Terra-i is: A mapping and monitoring system for rapid assessment of land cover conversion at a medium scale (250m). A tool for monitoring conversion of habitat at continental, national and regional level in close to real time. A tool for understanding the effectiveness of protected areas and other conservation measures in stabilizing or reducing land cover conversion. A spatial support system for decision making in public policy and private development initiatives. Through its linkage with WaterWorld and Co$ting Nature, a system for understanding the likely impacts of near real-time land cover change on a wide range of ecosystem services. Terra-i isn’t: X Detailed monitoring tool in local level. For this it requires second-level monitoring (with high resolution images) and third level (field data). X A system to monitor degradation.

Hinweis der Redaktion

  1. La implementación del sistema para el conjunto de datos de América Latina es un gran reto desde la perspectiva informática, trabajar con datos de 250 metros de resolución significa que el grid analizado representa más de mil millones de valores individuales para cada periodo de tiempo (cada 16 días). Esto implica que más de 26 mil millones de valores deben ser procesados por año. Es por esto que se utilizan tecnologías de tipo data mining y programación distribuida, que permiten analizar una gran cantidad de datos en un menor tiempo. Terra-I se corre en super computadoras, dotadas con 8 procesadores.
  2. En Colombia las causas de pérdida de hábitat varían en cada región. En la región Andina la pérdida de bosques se asocia principalmente a la expansión de la frontera agrícola, el desarrollo de nueva infraestructura e incendios forestales. Mientras que en la Amazonia y el Pacífico la principal causa es la explotación maderera.
  3. En Colombia las causas de pérdida de hábitat varían en cada región. En la región Andina la pérdida de bosques se asocia principalmente a la expansión de la frontera agrícola, el desarrollo de nueva infraestructura e incendios forestales. Mientras que en la Amazonia y el Pacífico la principal causa es la explotación maderera.
  4. WaterWorld was used to calculate the hydrological baseline and terra-i chosen as the deforestation scenario to run the alternative. The images show the change in flows (left) and sediment from the baseline to the alternative.  Flows increased below of reduced evapo-transpiration.  Erosion increased in the deforested areas and sedimentation increased in the river draining these areas.