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Phytophthora Database http://www.phytophthoradb.org cyber-infrastructure for plant pathogens 13 th  August 2008 Bongsoo Park Department of Plant Pathology Pennsylvania State University
Plant Pathology in General ,[object Object],Host Disease Environmental Factors
Strengths in Plant Pathology at Penn State ,[object Object],[object Object],[object Object],[object Object],[object Object]
Why ‘Phytophthora’ genus is important? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Sudden oak death in California
Phytophthora infestans Morphology Has been important.
Global importance and collaborations Major crop loss caused by introduced pathogens (Agrious, 2005) Fund by USDA
What I have done so far? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Web site construction
Phylogenetic Analysis on  Phytophthora   A multi-locus phylogeny for  Phytophthora  utilizing markers derived from complete genome sequences. Jaime E. Blair et al
What I’m doing right now? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Database curation ,[object Object],[object Object],GenBank PD 1837 (More & Accurate) 1517 (Accessibility) ?
Database expansion
DNA BARCODE; Why ITS has been utilized in systematics? ,[object Object],[object Object],[object Object],[object Object]
ITS Figure on PD
ITS Sequence in General ITS1 ITS2
Design for Species specific Nucleotide oligos 15nt Region 4 Region 1 Specific region 3 Specific region 2 Region 1 Specific region 2 Specific region 3 Region 4
Cyber-infrastructure for Plant Pathology ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Acknowledgements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object]

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