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Variations in citation practices across
the scientific landscape:
Analysis based on a large full-text corpus
Wout S. Lamers*, Nees Jan van Eck & Ludo Waltman
<*w.s.lamers, ecknjpvan, waltmanlr>@cwts.leidenuniv.nl
Centre for Science and Technology Studies (CWTS), Leiden University
Goals
• Publication full text as a new data source
– Extent of engagement with cited work?
– What is the role of cited works in new narrative?
– Do scientific disciplines differ in how they utilize cited works?
• This paper: combine full text features with
maps of science to show variation across fields
– Can we map differences in scientific activities / ways in which
knowledge is produced?
– Focus on verbs & activities
1
The scientific landscape
2
868 scientific fields, WoS
Data collection
3
Data collection
4
Scientific
fields
868
Data collection
5
…
Scientific
fields
Field
publications
(2002 – 2011)
868 ~7.000.000
Web of Science
Data collection
6
…
Scientific
fields
Field
publications
(2002 – 2011)
Citing
publications
(2002 - 2016)
…
868 ~4.000.000
ScienceDirect
~7.000.000
Web of Science
Citing
publications
Data collection
7
…
Scientific
fields
Field
publications
…
868 ~58.000.000
…to test for differences between tooth types (e.g., Grine, 2005).
...as Grine (2005) also noted this in humans.
…thicker enamel compared to the lingual cusps.22,23
Citing
sentences
…
…
~7.000.000
Web of Science
~4.000.000
ScienceDirect
Data collection
8
Scientific
fields
868
…to test for differences between tooth types (e.g., Grine, 2005).
...as Grine (2005) also noted this in humans.
Citing
sentences
…thicker enamel compared to the lingual cusps.22,23
…
~58.000.000
Data collection
9
…to test for differences between tooth types (e.g., Grine, 2005).
...as Grine (2005) also noted this in humans.
…thicker enamel compared to the lingual cusps.22,23
…
Data collection
10
...as Grine (2005) also noted this in humans.
…thicker enamel compared to the lingual cusps.22,23
…
…
…
…
…
…
…
…
…
…
…
…
……
…
…
…
…
…
…
…
…
…
……
…
…
…
…
…
…
…
…
…
…
…
…
…
…
……
…
…
…
…
…
…to test for differences between tooth types (e.g., Grine, 2005).
Features of interest
• …to test for differences between tooth types (e.g.,
Grine, 2005).
• ...as Grine (2005) also noted this in humans.
• …thicker enamel compared to the lingual
cusps.22,23
11
Features of interest
Citation styles – author-year and others
• …to test for differences between tooth types (e.g.,
Grine, 2005).
• ...as Grine (2005) also noted this in humans.
• …thicker enamel compared to the lingual
cusps.22,23
Known disciplinary variation
12
Features of interest
Direct (‘integral’) inclusion of cited author in sentence
• …to test for differences between tooth types (e.g.,
Grine, 2005).
• ...as Grine (2005) also noted this in humans.
• …thicker enamel compared to the lingual
cusps.22,23
Indicative of higher engagement
13
Features of interest
Use of verbs within the sentence
• …to test for differences between tooth types (e.g.,
Grine, 2005).
• ...as Grine (2005) also noted this in humans.
• …thicker enamel compared to the lingual
cusps.22,23
Activities associated with cited literature
14
Overlay maps
15
Overlay - author-year style citation
17
Overlay - cited author integral to
citing sentence
18
Observations
• Author-year labels favored in SSH and Life and
Earth sciences
• Author names included in sentences in SSH and
Mathematics, CS, Physics
• Limited overlap!
19
A closer look at verbs
20
• Verbs represent actions, activities
– Either performed by the cited authors
– Or otherwise intrinsic to the research field
• Do certain types of verbs occur more often in
certain scientific fields?
• Surprisal score
log2
𝑝 𝑣𝑒𝑟𝑏,𝑓𝑖𝑒𝑙𝑑
𝑝 𝑣𝑒𝑟𝑏,𝑡𝑜𝑡𝑎𝑙
A closer look at individual verbs:
suggest
24
Half as common
in scientific field
Twice as common
in scientific field
A closer look at individual verbs:
advocate
25
A closer look at individual verbs:
propose
26
Suggest – advocate - propose
• Often used synonymously
– Wiek and Walter (2009) ADVOCATE a transdisciplinary approach;
Walker et al. (2001) PROPSE an adaptive approach.
• Suggest
– Inference from data: …located between 2.6 and 2.9µm, which
SUGGEST the presence of some hydroxylated phase…
• Propose
– Call to action: Saleh et al. (2003) PROPOSE to distinguish whether a
design can respond to known or unknown environmental changes…
– Presentation: Ratanamahatana and Gunopulos (2003) PROPOSE
another filter algorithm for attribute selection.
• Advocate
– As a research object: CEOs may seek greater salaries and ADVOCATE
high levels of stock option compensation … (Brandes et al., 2003).
27
A closer look at individual verbs:
think
28
A closer look at individual verbs:
deduce
29
Think - deduce
• Deduce
– Strong focus on logical inference
• Using Theorem 4 and Theorem 3.1 of [14], we immediately deduce
the following:
• From this we deduce that PQ=QP(cf. [2, Remark 2.2]).
• Think
– Informal language
• We think that the growth of CNPs may suffer from the processes of
carbohydrate polymerization…
• So, I think that the desirable inspecting results can be obtained by
integrating several different … testing technologies [71].
– In the context of the research object
• Brown (2004) reported that one interviewee stated that strong
candidates are those who “think like a scientist” (p. 251).
30
A closer look at individual verbs:
discuss
33
A closer look at individual verbs:
argue
34
Argue - discuss
• Argue
– Attempts at persuasion
• Similarly, some scholars argue that policies are symbolic, simply
maintaining the status quo (see Kelly, 2005 for a review).
• Alvesson and Karreman (2004) argue that it is important to investigate
how subjectivity is formed “empirically”.
• Discuss
– Often simply an indicator of contents
• Fleszar and Hindi [2] discuss some straightforward modifications of SS.
• Neuberger and Counsell (2002) discuss the limitations of the Impact
Factor...
– As a research object in SSH
– In the context of disagreements
• Monton & van Fraassen (2003, p. 412) discuss Rosen’s objection,
somewhat tangentally, in a footnote.
35
A closer look at individual verbs:
observe
36
A closer look at individual verbs:
demonstrate
37
Demonstrate - observe
• Observe
• The same trend has been observed by Hameed [6].
• GCC185 has been observed to bind and regulate syntaxin 16 [45].
• Demonstrate
– Used for observation
• Other studies demonstrate at least ~40% of the occult cancers being
located in the (distal) fallopian tube.9,11,25,30,31,33,36
– Inference from data
• Recent data demonstrate that the mouse collagen X promoter is…
• Shapiro (2005) demonstrates a similar pattern amongst Food Stamp
recipients, who reduce caloric intake over the course of…
• Apparent disciplinary language preference
38
A closer look at individual verbs:
prove
39
A closer look at individual verbs:
conclude
40
Prove - conclude
• Prove
– Demonstration of effectiveness
• The method has been PROVED under controlled laboratory
conditions, up to a SNR=-30dB[3].
– As conclusion
• The current genome-wide association studies PROVED this
assumption to be correct [37–39].
• Conclude
• Another comparison also CONCLUDED that ?SD values calculated by
the Dorris–Gray method were more accurate compared to…
• As CONCLUDED by Watson et al. (2005), degradation rates have to
be decreased during upscaling from lab to field dimensions.
41
Findings
42
• Large differences in verb usage across the scientific
landscape
• Polysemy is evident, and makes it difficult to
establish types or groups of similar verbs
• Verb may indicate a research object, instead of a
research act
• Challenge: no guarantee verb is actually strongly
associated with cited work
Thank you!
Questions?
w.s.lamers@cwts.leidenuniv.nl
@WoutLamers
43
A closer look at verbs types
44
• Reporting verbs
– Citing authors report on cited work
– Research verbs
• Analyse, demonstrate, detect, estimate, observe, measure, …
– Cognition verbs
• Accept, believe, infer, know, reason, theorize, think, understand, …
– Discourse verbs
• Argue, clarify, discuss, critique, imply, propose, refute, …
A closer look at verb types:
Discourse verbs
46
A closer look at verb types:
Research verbs
47
A closer look at verb types:
Cognition verbs
48
A closer look at verb types:
• Discourse verbs somewhat more frequent in social
sciences, humanities, health
• Research verbs occur slightly more in physical
sciences, social sciences, health
• Cognition verbs seem strongly favoured in social
science, humanities, maths, CS
Overall, effects are not very pronounced.
49
Experiment: LDA over all verbs and
research fields
• Raw verb counts, scientific fields as ‘documents’
50
surgery, physical wellbeing
51
improve evaluate assess receive treat
diagnose pour recommend grade score
chemistry, materials and machines
52
improve form exhibit prepare synthesize
dope fabricate microwave absorb coat
maths, computers, particle physics
53
study propose consider follow solve
let satisfy denote generalize compute
ecosystem, environment, planet(s)
54
occur indicate represent contain detect
soil reconstruct infer strain record
cells, microbes, molecules
55
play induce regulate inhibit promote
repress bind secrete encode localize
nutrition, biochemistry and neurology
56
increase reduce inhibit activate alter
attenuate ameliorate exert elevate evoke
social sciences and humanities
57
find examine reflect focus face argue
perceive engage learn argue pay
Challenges
• Topics seem strongly associated with distinct
regions of the scientific landscape
• But, dominated by field-specific verbs – let, dope,
pay, inhibit, ameliorate, secrete, soil, …
• Solution? Restrict analysis to only reporting verbs
or only ‘generic activities’?
– What is and what is not a reporting verb?
• follow, generate, process, correspond, compute, ascertain, uncover,
invoke, judge, standardize, defend, appreciate, profile, ..
– How do we restrict ourselves to ‘generic activities’ when that is
explicitly not what we aim to find?
58

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Variations in citation practices across the scientific landscape: Analysis based on a large full-text corpus

  • 1. Variations in citation practices across the scientific landscape: Analysis based on a large full-text corpus Wout S. Lamers*, Nees Jan van Eck & Ludo Waltman <*w.s.lamers, ecknjpvan, waltmanlr>@cwts.leidenuniv.nl Centre for Science and Technology Studies (CWTS), Leiden University
  • 2. Goals • Publication full text as a new data source – Extent of engagement with cited work? – What is the role of cited works in new narrative? – Do scientific disciplines differ in how they utilize cited works? • This paper: combine full text features with maps of science to show variation across fields – Can we map differences in scientific activities / ways in which knowledge is produced? – Focus on verbs & activities 1
  • 3. The scientific landscape 2 868 scientific fields, WoS
  • 7. Data collection 6 … Scientific fields Field publications (2002 – 2011) Citing publications (2002 - 2016) … 868 ~4.000.000 ScienceDirect ~7.000.000 Web of Science
  • 8. Citing publications Data collection 7 … Scientific fields Field publications … 868 ~58.000.000 …to test for differences between tooth types (e.g., Grine, 2005). ...as Grine (2005) also noted this in humans. …thicker enamel compared to the lingual cusps.22,23 Citing sentences … … ~7.000.000 Web of Science ~4.000.000 ScienceDirect
  • 9. Data collection 8 Scientific fields 868 …to test for differences between tooth types (e.g., Grine, 2005). ...as Grine (2005) also noted this in humans. Citing sentences …thicker enamel compared to the lingual cusps.22,23 … ~58.000.000
  • 10. Data collection 9 …to test for differences between tooth types (e.g., Grine, 2005). ...as Grine (2005) also noted this in humans. …thicker enamel compared to the lingual cusps.22,23 …
  • 11. Data collection 10 ...as Grine (2005) also noted this in humans. …thicker enamel compared to the lingual cusps.22,23 … … … … … … … … … … … … …… … … … … … … … … … …… … … … … … … … … … … … … … … …… … … … … … …to test for differences between tooth types (e.g., Grine, 2005).
  • 12. Features of interest • …to test for differences between tooth types (e.g., Grine, 2005). • ...as Grine (2005) also noted this in humans. • …thicker enamel compared to the lingual cusps.22,23 11
  • 13. Features of interest Citation styles – author-year and others • …to test for differences between tooth types (e.g., Grine, 2005). • ...as Grine (2005) also noted this in humans. • …thicker enamel compared to the lingual cusps.22,23 Known disciplinary variation 12
  • 14. Features of interest Direct (‘integral’) inclusion of cited author in sentence • …to test for differences between tooth types (e.g., Grine, 2005). • ...as Grine (2005) also noted this in humans. • …thicker enamel compared to the lingual cusps.22,23 Indicative of higher engagement 13
  • 15. Features of interest Use of verbs within the sentence • …to test for differences between tooth types (e.g., Grine, 2005). • ...as Grine (2005) also noted this in humans. • …thicker enamel compared to the lingual cusps.22,23 Activities associated with cited literature 14
  • 17. Overlay - author-year style citation 17
  • 18. Overlay - cited author integral to citing sentence 18
  • 19. Observations • Author-year labels favored in SSH and Life and Earth sciences • Author names included in sentences in SSH and Mathematics, CS, Physics • Limited overlap! 19
  • 20. A closer look at verbs 20 • Verbs represent actions, activities – Either performed by the cited authors – Or otherwise intrinsic to the research field • Do certain types of verbs occur more often in certain scientific fields? • Surprisal score log2 𝑝 𝑣𝑒𝑟𝑏,𝑓𝑖𝑒𝑙𝑑 𝑝 𝑣𝑒𝑟𝑏,𝑡𝑜𝑡𝑎𝑙
  • 21. A closer look at individual verbs: suggest 24 Half as common in scientific field Twice as common in scientific field
  • 22. A closer look at individual verbs: advocate 25
  • 23. A closer look at individual verbs: propose 26
  • 24. Suggest – advocate - propose • Often used synonymously – Wiek and Walter (2009) ADVOCATE a transdisciplinary approach; Walker et al. (2001) PROPSE an adaptive approach. • Suggest – Inference from data: …located between 2.6 and 2.9µm, which SUGGEST the presence of some hydroxylated phase… • Propose – Call to action: Saleh et al. (2003) PROPOSE to distinguish whether a design can respond to known or unknown environmental changes… – Presentation: Ratanamahatana and Gunopulos (2003) PROPOSE another filter algorithm for attribute selection. • Advocate – As a research object: CEOs may seek greater salaries and ADVOCATE high levels of stock option compensation … (Brandes et al., 2003). 27
  • 25. A closer look at individual verbs: think 28
  • 26. A closer look at individual verbs: deduce 29
  • 27. Think - deduce • Deduce – Strong focus on logical inference • Using Theorem 4 and Theorem 3.1 of [14], we immediately deduce the following: • From this we deduce that PQ=QP(cf. [2, Remark 2.2]). • Think – Informal language • We think that the growth of CNPs may suffer from the processes of carbohydrate polymerization… • So, I think that the desirable inspecting results can be obtained by integrating several different … testing technologies [71]. – In the context of the research object • Brown (2004) reported that one interviewee stated that strong candidates are those who “think like a scientist” (p. 251). 30
  • 28. A closer look at individual verbs: discuss 33
  • 29. A closer look at individual verbs: argue 34
  • 30. Argue - discuss • Argue – Attempts at persuasion • Similarly, some scholars argue that policies are symbolic, simply maintaining the status quo (see Kelly, 2005 for a review). • Alvesson and Karreman (2004) argue that it is important to investigate how subjectivity is formed “empirically”. • Discuss – Often simply an indicator of contents • Fleszar and Hindi [2] discuss some straightforward modifications of SS. • Neuberger and Counsell (2002) discuss the limitations of the Impact Factor... – As a research object in SSH – In the context of disagreements • Monton & van Fraassen (2003, p. 412) discuss Rosen’s objection, somewhat tangentally, in a footnote. 35
  • 31. A closer look at individual verbs: observe 36
  • 32. A closer look at individual verbs: demonstrate 37
  • 33. Demonstrate - observe • Observe • The same trend has been observed by Hameed [6]. • GCC185 has been observed to bind and regulate syntaxin 16 [45]. • Demonstrate – Used for observation • Other studies demonstrate at least ~40% of the occult cancers being located in the (distal) fallopian tube.9,11,25,30,31,33,36 – Inference from data • Recent data demonstrate that the mouse collagen X promoter is… • Shapiro (2005) demonstrates a similar pattern amongst Food Stamp recipients, who reduce caloric intake over the course of… • Apparent disciplinary language preference 38
  • 34. A closer look at individual verbs: prove 39
  • 35. A closer look at individual verbs: conclude 40
  • 36. Prove - conclude • Prove – Demonstration of effectiveness • The method has been PROVED under controlled laboratory conditions, up to a SNR=-30dB[3]. – As conclusion • The current genome-wide association studies PROVED this assumption to be correct [37–39]. • Conclude • Another comparison also CONCLUDED that ?SD values calculated by the Dorris–Gray method were more accurate compared to… • As CONCLUDED by Watson et al. (2005), degradation rates have to be decreased during upscaling from lab to field dimensions. 41
  • 37. Findings 42 • Large differences in verb usage across the scientific landscape • Polysemy is evident, and makes it difficult to establish types or groups of similar verbs • Verb may indicate a research object, instead of a research act • Challenge: no guarantee verb is actually strongly associated with cited work
  • 39. A closer look at verbs types 44 • Reporting verbs – Citing authors report on cited work – Research verbs • Analyse, demonstrate, detect, estimate, observe, measure, … – Cognition verbs • Accept, believe, infer, know, reason, theorize, think, understand, … – Discourse verbs • Argue, clarify, discuss, critique, imply, propose, refute, …
  • 40. A closer look at verb types: Discourse verbs 46
  • 41. A closer look at verb types: Research verbs 47
  • 42. A closer look at verb types: Cognition verbs 48
  • 43. A closer look at verb types: • Discourse verbs somewhat more frequent in social sciences, humanities, health • Research verbs occur slightly more in physical sciences, social sciences, health • Cognition verbs seem strongly favoured in social science, humanities, maths, CS Overall, effects are not very pronounced. 49
  • 44. Experiment: LDA over all verbs and research fields • Raw verb counts, scientific fields as ‘documents’ 50
  • 45. surgery, physical wellbeing 51 improve evaluate assess receive treat diagnose pour recommend grade score
  • 46. chemistry, materials and machines 52 improve form exhibit prepare synthesize dope fabricate microwave absorb coat
  • 47. maths, computers, particle physics 53 study propose consider follow solve let satisfy denote generalize compute
  • 48. ecosystem, environment, planet(s) 54 occur indicate represent contain detect soil reconstruct infer strain record
  • 49. cells, microbes, molecules 55 play induce regulate inhibit promote repress bind secrete encode localize
  • 50. nutrition, biochemistry and neurology 56 increase reduce inhibit activate alter attenuate ameliorate exert elevate evoke
  • 51. social sciences and humanities 57 find examine reflect focus face argue perceive engage learn argue pay
  • 52. Challenges • Topics seem strongly associated with distinct regions of the scientific landscape • But, dominated by field-specific verbs – let, dope, pay, inhibit, ameliorate, secrete, soil, … • Solution? Restrict analysis to only reporting verbs or only ‘generic activities’? – What is and what is not a reporting verb? • follow, generate, process, correspond, compute, ascertain, uncover, invoke, judge, standardize, defend, appreciate, profile, .. – How do we restrict ourselves to ‘generic activities’ when that is explicitly not what we aim to find? 58