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The Latest Discovery: Exploring the Potential of
Cell Penetrating Peptides for Effective Drug
Delivery
Dr Sarah Jones
Molecular Pharmacology Research Group, University of
Wolverhampton
Overview
 History and Background of CPPs
 Hurdles and Progress

 Where the field is at the moment
 Targeting Protein-Protein Interactions,
from Bioportides to Sperm
Cell Penetrating Peptides
(CPPs)
• Inert vectors for the delivery of
bioactive cargoes into the
intracellular milieu
• Intracellular delivery of Peptides,
Proteins, Drugs,
Oligonucleotides (siRNA, PNA),
Plasmids
• Viable alternative to viral vectors
and current non-viral
intracellular delivery
CPP History: A Long Time Coming!
 1988 - The TransActivator of
Transcription protein (TAT) derived
from the HIV virus entered cells

 1994- Penetratin –Helix 3 of the
Antennapedia homeodomain

 1997 - Tat48-60, a truncated
arginine-rich sequence conferred
cellular penetration.

Tat

AntHD43-58 Penetratin
Classification of CPPs
Protein-derived

Chimeric

Penetratin
Tat48-60
pVEC

RQIKIWFQNRRMKWKK-NH2

Transportan

GWTLNSAGYLLGKaINLKALAALAKKIL-NH2

Transportan 10

GRKKRRQRRRPPQ
LLIILRRRIRKQAHAHSK

AGYLLGKaINLKALAALAKKIL-NH2

PepFects

Synthetic/Designed

Polyarginine

RRRRRRRR

(RXR)4

(R(Ahx)R)4

CADY

Ac-GLWRALWRLLRSLWRLLWRA-Cya
Most CPP are polycationic sequences
Primary Sequence

Name/Source

HIV-1 Tat-derived peptides
GRKKRRQRRRPPQ
QPPRRRQRRKKRG

Tat48-60
RI-Tat

Penetratins
RQIKIWFQNRRMKWKK
RRRRRRRQIKIWFQNRRMKWKK

AntHD43-58 (Penetratin)
R6-Penetratin

Other arginine-rich peptides
RRRRRRRRR
(R(Ahx)R)4

R8 and R9 are the most common
(RXR)4

Predominantly amphipathic sequences
AGYLLGKINLKALAALAKKIL
INLKKLAKL(Aib)KKIL
LLIILRRRIRKQAHAHSK

Transportan10
Mitoparan
pVec

Hydrophobic Sequences
CSIPPEVKFNKPFVYLI

C105Y
Uptake mechanisms, a fixation!
Direct membrane
translocation (4oC)

Fixation artifacts (Live cell imaging)

Endocytosis (37oC, ATP)

Clathrin-mediated
Caveolin-mediated
Macropinocytosis

Dependent upon sequence, cell type, concentration and cargo
(biochemical properties and size)
To Endocytose or not to Endocytose? That is the question

Mishra A et al.
Translocation of HIV TAT
peptide
and analogues induced by
multiplexed membrane and
cytoskeletal interactions
PNAS (2011) 108 16883
Progress in CPP Technologies
PepFect Technologies

AGYLLGKINLKALAALAKKIL-NH2

TP10
PepFect3

Stearyl-AGYLLGKINLKALAALAKKIL-NH2

PepFect6

Stearyl-AGYLLGKINLKALAALAKKIL-NH2

PepFect14

Stearyl-AGYLLGKLLOOLAAAALOOLL-NH2

• Oligonucleotide therapeutics-siRNA and
splice correcting oligonucleotides
• Ecsapes endosomal entrapment
associated with the delivery of larger
cargoes

Ülo Langel Stockholm University

CPP Technologies in Clinical Development
• PsorBan (CellGate) – heptaarginine coupled to cyclsporin A (psoriasis)

• KAI-9803 (Kai Pharmaceuticals) - tat coupled to a peptide inhibitor of PKCd (reperfusion injury)
• XG-102 (Auris Medical)– tat coupled to a JNK inhibiting peptide (traumatic hearing loss)
What Cell Penetrating Peptides DO NOT DO!
The Lipinski Rule of Five
•Its molecular weight is less than 500.
•The compound's lipophilicity, expressed as a quantity known as logP (the logarithm of the partition
coefficient between water and 1-octanol), is less than 5.
•The number of groups in the molecule that can donate hydrogen atoms to hydrogen bonds (usually
the sum of hydroxyl and amine groups in a drug molecule) is less than 5

•The number of groups that can accept hydrogen atoms to form hydrogen bonds (estimated by the
sum of oxygen and nitrogen atoms) is less than 10.
Bioactive Cell Penetrating Peptides (Bioportides) Enhance the Repertoire of Druggable
Targets
Expansion of Druggable Targets

It is estimated that 8-10% of the
human genome encodes diseasemodifying proteins
Only 10% of the druggable genome
can be targeted by conventional
approaches (SMDs)
New Chemical Entities which target
Protein-Protein Interactions are
gaining momentum as an attractive
therapeutic modality
Proteomics and interactomics will
identify many other PPIs that can be
modulated by peptides

Intracellular Drug Target Space
Mast cell secretion

Activation of
p42/44
MAPK
Sychnologic CPP

Rhegnylogic CPP
Sequence

Target

Activity

Nosangiotide

ND

Anti-angiogenic

Sequence

Target

Activity

Pathology

Camptide

G proteins

cAMP modulation

Tat-DI1

Raf
dimerizatio
n

Inhibits proliferation of NSCLC
cell lines

Cancer

Cyt c77-101

ER

Apoptogenic

BIP

BAX

Antp-MEK1

ERK

Inhibition of ERK2 activation

Cancer

Anti-apoptogenic
(neuroprotection)

Tat48-60-P10

PCNA

Apoptogenic

Cancer

Mouse PrP1-28

Prion Proteins

Anti-prion infection

STAT-6-IP

STAT-6

Inhibitor of TH2 cytokine
production

Allergic
airways
disease

AT1AR304-318

G proteins

Blood vessel
contraction

Hph-1ctCTLA-4

TcR
signalling

Inhibition of TcR signalling.
Reduction in Th2 cytokines,
serum IgE

Allergic
airways
disease

Vasostatin-1

Heparan Sulphate
Proteoglycans

eNOS activation
(vasodilatory)

Arf (1-22)

ND

Apoptogenic

Mitoparan

VDAC (mitochondria)

Apoptogenic

Stapled p53derived peptides

p53-hDM2

Reactivation of p53
apoptosis pathway

Tat-acpTrkA666-676
Nup153-Cyt

TrkA
activation
loop

TrkA antagonism

NPC

Apoptogenic

Inflammator
y pain
Cancer
Bioactive Cell Penetrating Peptides - Bioportides
Signal
Transduction
Domain

Position

85

IKKKEERADLIAYLKK

2

16

86

KKKEERADLIAYLKKA

3

17

84

GIKKKEERADLIAYLKK

3

17

85

IKKKEERADLIAYLKKA

3

17

QSAR Prediction Algorithm

No. of
Amino
Acids

16

Whole
Protein

Sequence

86

KKKEERADLIAYLKKAT

2

Prediction algorithm: Hällbrink et al. Int. J. Peptide Res. Ther. 11, 249 (2005)
CPP mimic of GPCRs: Ostlund et al. Int. J. Peptide Res. Ther. 11, 237 (2005)

CPP
Probability
Anti-angiogenic Properties of Nosangiotide (eNOS492-507)
A Bioportide Derived from Endothelial Nitric Oxide Synthase
Nosangiotide is
located within the
a-helix domain
(shown in yellow)
that tightly binds
calmodulin. Diagram
adapted from Aoyagi et
al., EMBO J. 22, 766-775
(2003)

Sequence
RKKTFKEVANAVKISASLMG
RKKTFKEVANA
RKKTFKEVANAVK
RKKTFKEVANAVKI
RKKTFKEVANAVKISA

Early distribution
Cells were incubated for
45 mins with rhoeNOS492-507 (5mM) in
endothelial cell medium
plus growth supplement
then transferred to
DMEM w/o phenol red
for confocal visualization

CPP Index

Later nuclear and
cytoplasmic
distribution

1
3
3
3
3 Nosangiotide

Cells were incubated for
80 mins with rhoeNOS492-507 (5mM) in
endothelial cell medium
plus growth supplement
then transferred to DMEM
w/o phenol red for
confocal visualization
Nosangiotide (eNOS492-507) Inhibits Biological Features of FGF-induced Angiogenesis

in vitro

(a)

(b)

(c)
250

1750
90,000

80,000

70,000

mean of closed areas per field

number of migrated cells

cell number

1500

1250

1000

200

150

100

750
60,000

500
-9

-8

-7
492-507

log { [eNOS

-6

] (M) }

Proliferation
IC50 = 83.7 nM

-5

-8

-7

log { [eNOS

-6
492-507

Migration
IC50 = 38.2
nM

-5

] (M) }

-4

50

-9

-8

-7

-6
492-507

log { [eNOS

-5

-4

-3

] (M) }

Tube Formation
IC50 = 509 nM

Nosangiotide is a potent inhibitor of FGF-2 (25 ng/ml)-induced proliferation (a), migration (b) and tube
formation (c) of primary endothelial cells
Nosangiotide inhibits FGF-induced angiogenesis
A) Carrier control
B) FGF-2 (200ng)
C) Nosangiotide (0.5 nmole)
D) FGF-2 plus nosangiotide (0.5
nmole)
E) FGF-2 with nosangiotide (0.05
nmole)
F) FGF-2 with nosangiotide
(0.005 nmole).
Howl et al. (2012) Cell. Mol. Life Sci.
69, 2951 .
Identify Bioportide
Binding Partners

Future Work

Stapled
Peptides

Biotinylated CPP as
Molecular Fishing Rods

C-terminal helix

N-terminal helix

Biotinylated CPP

Primary Sequence Position
KGKKIF
KGKKIFI
GKKIFIMK
KGKKIFIM
KGKKIFIMK
EKGKKIFIMK

Swiss 3T3

Streptavidin-coated multiwell
plates

Primary Sequence
5-10
5-11
6-13
5-12
5-13
4-13

Position

VGIKKK
KMIFVGIKKK
KMIFVGIKKKEERA
KKKEERADLIAYLKKA
GIKKKEERADLIAYLKK
IKKKEERADLIAYLKKA
VGIKKKEERADLIAYLKK 83-100
GIKKKEERADLIAYLKKA
FVGIKKKEERADLIAYLKK 82-100
VGIKKKEERADLIAYLKKA
IFVGIKKKEERADLIAYLKK 81-100
FVGIKKKEERADLIAYLKKA
KMIFVGIKKKEERADLIAYLK 79-99
MIFVGIKKKEERADLIAYLKK 80-100
IFVGIKKKEERADLIAYLKKA
KMIFVGIKKKEERADLIAYLKK 79-100
MIFVGIKKKEERADLIAYLKKA
TKMIFVGIKKKEERADLIAYLKK 78-100
KMIFVGIKKKEERADLIAYLKKA79-101
GTKMIFVGIKKKEERADLIAYLKKA
TKMIFVGIKKKEERADLIAYLKKA
KMIFVGIKKKEERADLIAYLKKAT
GTKMIFVGIKKKEERADLIAYLKKA77-101
TKMIFVGIKKKEERADLIAYLKKAT
KMIFVGIKKKEERADLIAYLKKATN

83-88
79-88
79-92
86-101
84-100
85-101
84-101
83-101
82-101

81-101
80-101

77-101
78-101
79-102
78-102
79-103

 Cross linking of peptide side chains

TRYPSIN
DIGEST

 Metabolic stability
 Enhance propensity for cellular
penetration
Dr Ashley Martin
MALDI
TOF/TOF

Proteomics Unit Cancer Studies
University of Birmingham, UK

a-aminoisobutyric
acid
LRRK2-derived Bioportides

Highly Probable CPPs collectively
spanning the entire LRRK2 protein

CPPs containing mutations known to cause
Parkinson’s disease

Sequence

Position

Sequence

Position (mutation)

TLKKLIVRLNNVQEGKQI

15-32

KKQCFKNDIHKLVLAALNRFI

534-554 (K544E)

RKILLSKGIHLN

433-444

SPKLVELLLNSGSREQDVRKAL

754-775 (P755L)

KLVLAALNRFIG

544-555

QIISLLLRRLALDVANNSICLG

785-806 (R793M)

RKALTISIGKGDSQIISLLLRR

772-793

NLRKQTNIASTLARMVIRYQMK

828-849

GNKISGICSPLRLKELKILNL

1116-1136 (I1122V)

LLKRKRKILSSDDSLRSSKLQ

945-965

ATVGIDVKDWPIQIRDKRKRDL

1367-1388 (I1371V)

SPLRLKELKILNLSKN

1124-1139

LISLLAAGIRPRMLVMELASKG

1932-1953 (R1941H)

KKTEKLCGLIDCVHFLREVMVK

2378-2399 (G2385R)

HIGCKAKDIIRFLQQRLKKAVP

1310-1331

LQQRLKKAVPYNRMKLMIV

1322-1340

GSGKTTLLQQLMKTKK

1344-1359

ATVGIDVKDWPIQIRDKRKR

1367-1386

KQRKACMSKITKELLNKRGFPA

1460-1481

LAKLRKTIINESLNFKIRDQLV

1497-1518

PVIDRKRLLQLVRENQLQL

1546-1564

AVKIFNKHTSLRLLRQ

1904-1919

LISLLAAGIRPR

1932-1943

RLLQQDKASLTRTLQHRIA

1957-1975

LTRRILLPKNVI

2140-2151

KTVKLKGAAPLKILNIGN

2278-2295

RVKTLCLQKNTALWI

2413-2427

LLLDLSTRRLIRVI

2435-2448

IEVRKELAEKMRRT

2511-2524

> 5000 Probable
CPP
LRRK2: Not just Parkinsons!
 LRRK2 role in Inflammatory
Bowel Disease (Liu, Z. et al.,
(2011) Nature Immunology 12,10631070)

LRRK2

 LRRK2 sequesters NFAT in the
cytoplasm
 LRRK2 deficiency enhances
susceptibility to experimental
colitis and enhances nuclear
localization of NFAT

 NFAT Luciferase reporter assay (Armesilla, A.L. et al. (1999) Mol. Cell. Biol. 19, 2032-2043)
 Bioportides facilitate relocation of NFAT from the cytoplasm to the nucleus?
 Bioportides abrogate PMA and Ca2+ ionophore induced relocation of NFAT?
 The role of the Immune System in PD
Candidate Bioportides for Modulation of NFAT Translocation
LRRK21310-1331
T2397M

LRRK21124-1139

LRRK215-32
1
ARM

LRRK21116-1136
I1122V
ANK

LRR

LRRK22378-2399
LRRK21367-1386
ROC

G2385R
COR

Kinase

WD40

Leucine-Rich
Repeat domain

KLEQLILEGNKISGICSPLRLK
GNKISGICSPLRLKELKILNL
LRRK21116-1136
GNKISGVCSPLRLKELKILNL
LRRK21116-1136 (I1122V)
SPLRLKELKILNLSKN
LRRK21124-1139
LRRK21310-1331 (C-terminal helix)

Inhibits NFAT translocation

2527

Van Craenenbroeck et al., (2012) Purification and
preliminary biochemical and structural
characterisation of the leucine rich repeat domain
of LRRK2. Biochem. Biophys. Acta 1824, 450

WT inhibits NFAT translocation
Mutant enhances NFAT translocation
Enhances NFAT translocation

HIGCKAKDIIRFLQQRLKKAVP
LRRK22378-2399 includes the very common T2397M risk allele for Crohn’s Disease
LRRK21310-1331
T2397M

LRRK21124-1139

LRRK215-32
1

ARM

LRRK21116-1136
I1122V
ANK

LRRK2-derived bioportides
modulate NFAT translocation. HEK293 cells were transiently transfected
with a luciferase reporter vector
(pNFAT-Ta-Luc; Clontech). Luciferase
activity was measured as an indicator
of NFAT translocation to the nucleus.
Cells were stimulated with PMA (20
ng/ml) and the calcium ionophore
A23187 (1 mM) for 16 hours.
Luciferase activity was calculated as
fold induction over the value of the
reporter vector in un-stimulated cells.

LRR

LRRK22378-2399
LRRK21367-1386
ROC

COR

Kinase

G2385R
2527
WD40
Building Cell Selectivity into CPP Delivery
•

CPP can be readily incorporated into
multimeric complexes

•

An inherent lack of specificity can be
surmounted by the inclusion of
tissue specific targeting peptides

•

Phage Display Technology has
generated an abundance of tissue
homing peptides
Building Cell Selectivity into CPP Delivery

Homing Peptides

CPP

Sequence
Peptide-Based Glioma-Targeted Drug Delivery Vector gHoPe2

Coronal section of a mouse brain with U87 tumor in the right striatum. The tumour area is circled with a
dotted line. (B) H&E stained hemisphere of brain and glioma. (C) The animals received an i.v. injection of
FAM-labeled gHoPe2 3 h before tissue collection

Liver

Kidney

Intracranial Tumour Model

Intact brain

Intracranial
tumour

FAM-gHo

Eriste, E., Kurrikoff, K., Suhorutsenko, J., et al. Bioconjugate Chemistry (2013). In press
Scale 100 μm.

FAM-gHoPe2
Building Cell Selectivity into CPP Delivery
Activatable CPPs
Exploitation of tissue specific endopeptidases
cargo

++++++++++++++

cargo

++++++++++++++

-----------Cellular internalization
impaired

Cellular internalization

MMP2

Matthias Hallbrink – NoPe (YTA4 + MMP-2 cleavage site + inactivationg region) -tumour imaging in vivo.
The Challenge: Penetrating the Impenetrable
Internal Volume

Nucleus

•
•

•

Is reduced.
Mature sperm lacks a variety of
organelles: endoplasmic reticulum,
Golgi apparatus, cytosolic ribosomes.

•

Once Spermatozoa are released into the
seminiferous tubules, genomic transcription and
translation have largely been silenced.
Conventional molecular biology techniques are
thus redundant. Modulation of sperm cell
biology is restricted to cell permeable agents.

Plasma Membrane
•
•
•
•

Lipid composition of plasma membrane is highly
polarized and compartmentalized.
It appears to be incapable of endocytotic events.
Static physical barrier
Detergents are detrimental to protein function
http://www.flickr.com/photos/wellcomeimages/5814253423/
Understanding Sperm Biology with CPP
Sperm are transcriptionally and translationary inactive
Studies of their intracellular biology are restricted to cell permeable agents
CPP are ideal vehicles for the study of sperm intracellular biology, from motility
to capacitation and the acrosome reaction
Can be easily isolated from bulls semen with supplemented EBSS containing
0.3% BSA (“swim up method”)

sEBSS
(0.3% BSA)
semen
Differential Intracellular Distribution of CPP

6
5
4
3
2
1

13
21

iM
rV

1a

R

10

P

0
Ta
t
10
5Y
M
itP
TP
10
iM
it P

Rho-C105Y (5mM)

7

C

Rho-tat (5mM) + DIC

8

Rho-C105Y (5mM)

tr
at
in

Rho-penetratin (5mM)
Mitotracker (500nM)

Rho-tat (5mM) + DIC

C105Y

Fluorescence minus background (A.U.)

Rho-penetratin (5mM)

Tat

Pe
ne

Penetratin

Comparative analysis of CPP translocation
efficacies into bovine spermatozoa.
Spermatozoa were incubated with TAMRAlabelled CPP (5 mM) for 1 h at 37 oC. Data are
mean + S.E.M. from 3 experiments performed
in triplicate.
The Mitochondrial-localising CPP Mitoparan
Rho-MitP (5mM)

Rho-MitP (5mM)

Mitotracker (500 nM)

Mitotracker (500 nM)

merge

Mitochondrial Midpiecei

Rho-TP10
(5mM)

Mitotracker (500 nM)

merge
. Protein

Delivery

Rho-TP10 (3 mM) + avidin Alexa Fluor® 488 (1 mM)

Spermatozoa

Merge
DIC

Avidin

Merge

Swiss 3T3

TP10

Swiss 3T3

Rho-TP10 (1 mM) + avidin Alexa Fluor® 488 (0.33 mM)

Rho-TP10 (3 mM) + avidin Alexa Fluor® 488 (1 mM)

Merge

Avidin

Merge

Avidin

TP10

Merge
DIC

TP10

Merge
DIC
Why are CPP unable to deliver large proteins into sperm?
Translocation Kinetics of C105Y

Endocytosis Incompetent Spermatozoa
Swiss 3T3

Swiss 3T3

Spermatozoa

Spermatozoa

Transferrin Alexa Fluor® 488
(50 mg/ml)

Transferrin Texas Red®
(50 mg/ml)

LysoTracker® Red (75 nM))

LysoTracker® Red (75 nM))

Dextran Texas Red®
(10 mM)

Dextran Texas Red®
(10 mM)

10

8
t0.5 = 0.70 min

6

C105Y
tat

4

rV1aR102-113

2

0
0

10

20

30

40

50

60

Fluorescence minus background (A.U.)

Fluorescence minus background (A.U.)

10

12

8

6
t0.5 = 7.02 min

rV1aR102-113
2

0
0

10

20

30

40

50

60

Time (min)

Time (min)

Internalisation occurred with first order saturable
kinetics (F = Fmax x t/t0.5 + t, GraphPad Prism 5).

C105Y
tat

4

Cells were incubated at 37oC with TAMRA-labelled peptides (5mM)
for the times indicated. Normalised data (compared to tat-assigned
a value of 1) are expressed as mean fluorescence (minus
background) + s.e.m. from 3 experiments performed in triplicate.

Direct membrane translocation is the sole mechanism of CPP import into sperm
Bioportides as Modulators of Human Sperm [Ca2+]i Signalling
STIM1 ORAI1 Activating Region
442

334

EEELE

CC1
(248-342)

CC3
? STIM1
(485685)

KIKKK

CC2

CC2

CC2
EEEL
E

+++
CC1

CC3

(364-388) (399-432)

+
---

Occluded SOAR

CC1

KIKKK

CC3

? STIM1
(485685)

Free SOAR

Orai1

Plasma membrane

 Progesterone-the
best-characterised
agonist of human
sperm [Ca2+]i
signalling.

 Motility and the
acrosome reaction

 Biphasic [Ca2+]i
response

Store depletion
Endoplasmic reticulum

STIM1

STIM1371-392

H-KQLLVAKEGAEKIKKKRNTLFG-NH2

Scr- STIM1371-392 H-LKNKFKGVKLAEIEKQALKGTR-NH2
A

140

B

120
100
80
60

Non-capacitating

MitP
nosangiotide
tat

40
20
0
0

20

40

60

80 100 120 140 160 180

120
100
80
60

Capacitating
camptide

40

Cyt c 5-13
C105Y

20
0
0

20

40

60

80 100 120 140 160 180

C

100
90

% cell viability

140

Time (min)

Time (min)
110

% motile cells (*rapid) relative to controls

% motile cells (*rapid) relative to controls

CPP Import is Compatible with Sperm Motility and Viability

A, B. Motility data were collected from human sperm cells treated with 5 mM CPP.

80

C105Y
MitP
tat
iMitP
iMP
penetratin
nosangiotide

70
60
50
40
30

Each peptide was tested on samples from 3 individual donors. Data are shown as %
rapid cells from treated samples relative to that of controls and expressed as mean +

s.e.m. *rapid cells = velocity (average path) ≥25 µms-1 and straightness ≥ 80%.
C. Isolated bovine spermatozoa were treated with CPP for 1 h at the concentrations

20

indicated. Cell viability was measured by MTS conversion and expressed as a

10

percentage of those spermatozoa treated with vehicle alone (sEBSS).

0

-6.0

-5.5

-5.0

-4.5

log { [peptide] (M) }
Conclusions

 CPPs for site-specific delivery of bioactive
cargoes into mammalian sperm
 Cargo size is critical
 CPP technologies as valuable tools for the
investigation and modulation of
fundamental processes of sperm
physiology such as maturation,
capacitation, motility, hyperactivation and
fertilisation.

Pantechnia

Jones, S., Lukanowska, L., Suhorutsenko, J., Oxenham, S., Barratt, C., Publicover, S.,
Copolovici, D.M., Langel, Ü. and Howl, J. (2013) Intracellular translocation of cell
penetrating peptides into spermatozoa. Human Reproduction DOI:
10.1093/humrep/def064.
The Future for CPP
Therapeutics
Modifications to enhance stability are now
surmountable

Routes of administration
Mechanisms for moving forward

Marcus Evans Discovery and Evolution Summits

Mass Screening, Formulation and Analogues
Acknowledgements
Scientific contributors
University of Wolverhampton, UK
John Howl
Monika Lukanowska
University of Birmingham, UK
Michelle Farquhar
Ashley Martin
Steve Publicover
MRC Protein Phosphorylation Unit,
University of Dundee, UK
Dario Alessi
University of Dundee, UK
Chris Barratt
Senga Oxenham

Department of
Neurochemistry,
Stockholm University, Sweden
University of Tartu, Estonia
Ulo Langel
University of Manchester, UK
Shant Kumar

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Evolution 2013: Dr Sarah Jones, University of Wolverhampton on Exploring the Potential of Cell Penetrating Peptides for Effective Drug Delivery

  • 1. The Latest Discovery: Exploring the Potential of Cell Penetrating Peptides for Effective Drug Delivery Dr Sarah Jones Molecular Pharmacology Research Group, University of Wolverhampton
  • 2. Overview  History and Background of CPPs  Hurdles and Progress  Where the field is at the moment  Targeting Protein-Protein Interactions, from Bioportides to Sperm
  • 3. Cell Penetrating Peptides (CPPs) • Inert vectors for the delivery of bioactive cargoes into the intracellular milieu • Intracellular delivery of Peptides, Proteins, Drugs, Oligonucleotides (siRNA, PNA), Plasmids • Viable alternative to viral vectors and current non-viral intracellular delivery
  • 4. CPP History: A Long Time Coming!  1988 - The TransActivator of Transcription protein (TAT) derived from the HIV virus entered cells  1994- Penetratin –Helix 3 of the Antennapedia homeodomain  1997 - Tat48-60, a truncated arginine-rich sequence conferred cellular penetration. Tat AntHD43-58 Penetratin
  • 5. Classification of CPPs Protein-derived Chimeric Penetratin Tat48-60 pVEC RQIKIWFQNRRMKWKK-NH2 Transportan GWTLNSAGYLLGKaINLKALAALAKKIL-NH2 Transportan 10 GRKKRRQRRRPPQ LLIILRRRIRKQAHAHSK AGYLLGKaINLKALAALAKKIL-NH2 PepFects Synthetic/Designed Polyarginine RRRRRRRR (RXR)4 (R(Ahx)R)4 CADY Ac-GLWRALWRLLRSLWRLLWRA-Cya
  • 6. Most CPP are polycationic sequences Primary Sequence Name/Source HIV-1 Tat-derived peptides GRKKRRQRRRPPQ QPPRRRQRRKKRG Tat48-60 RI-Tat Penetratins RQIKIWFQNRRMKWKK RRRRRRRQIKIWFQNRRMKWKK AntHD43-58 (Penetratin) R6-Penetratin Other arginine-rich peptides RRRRRRRRR (R(Ahx)R)4 R8 and R9 are the most common (RXR)4 Predominantly amphipathic sequences AGYLLGKINLKALAALAKKIL INLKKLAKL(Aib)KKIL LLIILRRRIRKQAHAHSK Transportan10 Mitoparan pVec Hydrophobic Sequences CSIPPEVKFNKPFVYLI C105Y
  • 7. Uptake mechanisms, a fixation! Direct membrane translocation (4oC) Fixation artifacts (Live cell imaging) Endocytosis (37oC, ATP) Clathrin-mediated Caveolin-mediated Macropinocytosis Dependent upon sequence, cell type, concentration and cargo (biochemical properties and size)
  • 8. To Endocytose or not to Endocytose? That is the question Mishra A et al. Translocation of HIV TAT peptide and analogues induced by multiplexed membrane and cytoskeletal interactions PNAS (2011) 108 16883
  • 9. Progress in CPP Technologies PepFect Technologies AGYLLGKINLKALAALAKKIL-NH2 TP10 PepFect3 Stearyl-AGYLLGKINLKALAALAKKIL-NH2 PepFect6 Stearyl-AGYLLGKINLKALAALAKKIL-NH2 PepFect14 Stearyl-AGYLLGKLLOOLAAAALOOLL-NH2 • Oligonucleotide therapeutics-siRNA and splice correcting oligonucleotides • Ecsapes endosomal entrapment associated with the delivery of larger cargoes Ülo Langel Stockholm University CPP Technologies in Clinical Development • PsorBan (CellGate) – heptaarginine coupled to cyclsporin A (psoriasis) • KAI-9803 (Kai Pharmaceuticals) - tat coupled to a peptide inhibitor of PKCd (reperfusion injury) • XG-102 (Auris Medical)– tat coupled to a JNK inhibiting peptide (traumatic hearing loss)
  • 10. What Cell Penetrating Peptides DO NOT DO! The Lipinski Rule of Five •Its molecular weight is less than 500. •The compound's lipophilicity, expressed as a quantity known as logP (the logarithm of the partition coefficient between water and 1-octanol), is less than 5. •The number of groups in the molecule that can donate hydrogen atoms to hydrogen bonds (usually the sum of hydroxyl and amine groups in a drug molecule) is less than 5 •The number of groups that can accept hydrogen atoms to form hydrogen bonds (estimated by the sum of oxygen and nitrogen atoms) is less than 10.
  • 11. Bioactive Cell Penetrating Peptides (Bioportides) Enhance the Repertoire of Druggable Targets Expansion of Druggable Targets It is estimated that 8-10% of the human genome encodes diseasemodifying proteins Only 10% of the druggable genome can be targeted by conventional approaches (SMDs) New Chemical Entities which target Protein-Protein Interactions are gaining momentum as an attractive therapeutic modality Proteomics and interactomics will identify many other PPIs that can be modulated by peptides Intracellular Drug Target Space
  • 13. Sychnologic CPP Rhegnylogic CPP Sequence Target Activity Nosangiotide ND Anti-angiogenic Sequence Target Activity Pathology Camptide G proteins cAMP modulation Tat-DI1 Raf dimerizatio n Inhibits proliferation of NSCLC cell lines Cancer Cyt c77-101 ER Apoptogenic BIP BAX Antp-MEK1 ERK Inhibition of ERK2 activation Cancer Anti-apoptogenic (neuroprotection) Tat48-60-P10 PCNA Apoptogenic Cancer Mouse PrP1-28 Prion Proteins Anti-prion infection STAT-6-IP STAT-6 Inhibitor of TH2 cytokine production Allergic airways disease AT1AR304-318 G proteins Blood vessel contraction Hph-1ctCTLA-4 TcR signalling Inhibition of TcR signalling. Reduction in Th2 cytokines, serum IgE Allergic airways disease Vasostatin-1 Heparan Sulphate Proteoglycans eNOS activation (vasodilatory) Arf (1-22) ND Apoptogenic Mitoparan VDAC (mitochondria) Apoptogenic Stapled p53derived peptides p53-hDM2 Reactivation of p53 apoptosis pathway Tat-acpTrkA666-676 Nup153-Cyt TrkA activation loop TrkA antagonism NPC Apoptogenic Inflammator y pain Cancer
  • 14. Bioactive Cell Penetrating Peptides - Bioportides Signal Transduction Domain Position 85 IKKKEERADLIAYLKK 2 16 86 KKKEERADLIAYLKKA 3 17 84 GIKKKEERADLIAYLKK 3 17 85 IKKKEERADLIAYLKKA 3 17 QSAR Prediction Algorithm No. of Amino Acids 16 Whole Protein Sequence 86 KKKEERADLIAYLKKAT 2 Prediction algorithm: Hällbrink et al. Int. J. Peptide Res. Ther. 11, 249 (2005) CPP mimic of GPCRs: Ostlund et al. Int. J. Peptide Res. Ther. 11, 237 (2005) CPP Probability
  • 15. Anti-angiogenic Properties of Nosangiotide (eNOS492-507) A Bioportide Derived from Endothelial Nitric Oxide Synthase Nosangiotide is located within the a-helix domain (shown in yellow) that tightly binds calmodulin. Diagram adapted from Aoyagi et al., EMBO J. 22, 766-775 (2003) Sequence RKKTFKEVANAVKISASLMG RKKTFKEVANA RKKTFKEVANAVK RKKTFKEVANAVKI RKKTFKEVANAVKISA Early distribution Cells were incubated for 45 mins with rhoeNOS492-507 (5mM) in endothelial cell medium plus growth supplement then transferred to DMEM w/o phenol red for confocal visualization CPP Index Later nuclear and cytoplasmic distribution 1 3 3 3 3 Nosangiotide Cells were incubated for 80 mins with rhoeNOS492-507 (5mM) in endothelial cell medium plus growth supplement then transferred to DMEM w/o phenol red for confocal visualization
  • 16. Nosangiotide (eNOS492-507) Inhibits Biological Features of FGF-induced Angiogenesis in vitro (a) (b) (c) 250 1750 90,000 80,000 70,000 mean of closed areas per field number of migrated cells cell number 1500 1250 1000 200 150 100 750 60,000 500 -9 -8 -7 492-507 log { [eNOS -6 ] (M) } Proliferation IC50 = 83.7 nM -5 -8 -7 log { [eNOS -6 492-507 Migration IC50 = 38.2 nM -5 ] (M) } -4 50 -9 -8 -7 -6 492-507 log { [eNOS -5 -4 -3 ] (M) } Tube Formation IC50 = 509 nM Nosangiotide is a potent inhibitor of FGF-2 (25 ng/ml)-induced proliferation (a), migration (b) and tube formation (c) of primary endothelial cells
  • 17. Nosangiotide inhibits FGF-induced angiogenesis A) Carrier control B) FGF-2 (200ng) C) Nosangiotide (0.5 nmole) D) FGF-2 plus nosangiotide (0.5 nmole) E) FGF-2 with nosangiotide (0.05 nmole) F) FGF-2 with nosangiotide (0.005 nmole). Howl et al. (2012) Cell. Mol. Life Sci. 69, 2951 .
  • 18. Identify Bioportide Binding Partners Future Work Stapled Peptides Biotinylated CPP as Molecular Fishing Rods C-terminal helix N-terminal helix Biotinylated CPP Primary Sequence Position KGKKIF KGKKIFI GKKIFIMK KGKKIFIM KGKKIFIMK EKGKKIFIMK Swiss 3T3 Streptavidin-coated multiwell plates Primary Sequence 5-10 5-11 6-13 5-12 5-13 4-13 Position VGIKKK KMIFVGIKKK KMIFVGIKKKEERA KKKEERADLIAYLKKA GIKKKEERADLIAYLKK IKKKEERADLIAYLKKA VGIKKKEERADLIAYLKK 83-100 GIKKKEERADLIAYLKKA FVGIKKKEERADLIAYLKK 82-100 VGIKKKEERADLIAYLKKA IFVGIKKKEERADLIAYLKK 81-100 FVGIKKKEERADLIAYLKKA KMIFVGIKKKEERADLIAYLK 79-99 MIFVGIKKKEERADLIAYLKK 80-100 IFVGIKKKEERADLIAYLKKA KMIFVGIKKKEERADLIAYLKK 79-100 MIFVGIKKKEERADLIAYLKKA TKMIFVGIKKKEERADLIAYLKK 78-100 KMIFVGIKKKEERADLIAYLKKA79-101 GTKMIFVGIKKKEERADLIAYLKKA TKMIFVGIKKKEERADLIAYLKKA KMIFVGIKKKEERADLIAYLKKAT GTKMIFVGIKKKEERADLIAYLKKA77-101 TKMIFVGIKKKEERADLIAYLKKAT KMIFVGIKKKEERADLIAYLKKATN 83-88 79-88 79-92 86-101 84-100 85-101 84-101 83-101 82-101 81-101 80-101 77-101 78-101 79-102 78-102 79-103  Cross linking of peptide side chains TRYPSIN DIGEST  Metabolic stability  Enhance propensity for cellular penetration Dr Ashley Martin MALDI TOF/TOF Proteomics Unit Cancer Studies University of Birmingham, UK a-aminoisobutyric acid
  • 19. LRRK2-derived Bioportides Highly Probable CPPs collectively spanning the entire LRRK2 protein CPPs containing mutations known to cause Parkinson’s disease Sequence Position Sequence Position (mutation) TLKKLIVRLNNVQEGKQI 15-32 KKQCFKNDIHKLVLAALNRFI 534-554 (K544E) RKILLSKGIHLN 433-444 SPKLVELLLNSGSREQDVRKAL 754-775 (P755L) KLVLAALNRFIG 544-555 QIISLLLRRLALDVANNSICLG 785-806 (R793M) RKALTISIGKGDSQIISLLLRR 772-793 NLRKQTNIASTLARMVIRYQMK 828-849 GNKISGICSPLRLKELKILNL 1116-1136 (I1122V) LLKRKRKILSSDDSLRSSKLQ 945-965 ATVGIDVKDWPIQIRDKRKRDL 1367-1388 (I1371V) SPLRLKELKILNLSKN 1124-1139 LISLLAAGIRPRMLVMELASKG 1932-1953 (R1941H) KKTEKLCGLIDCVHFLREVMVK 2378-2399 (G2385R) HIGCKAKDIIRFLQQRLKKAVP 1310-1331 LQQRLKKAVPYNRMKLMIV 1322-1340 GSGKTTLLQQLMKTKK 1344-1359 ATVGIDVKDWPIQIRDKRKR 1367-1386 KQRKACMSKITKELLNKRGFPA 1460-1481 LAKLRKTIINESLNFKIRDQLV 1497-1518 PVIDRKRLLQLVRENQLQL 1546-1564 AVKIFNKHTSLRLLRQ 1904-1919 LISLLAAGIRPR 1932-1943 RLLQQDKASLTRTLQHRIA 1957-1975 LTRRILLPKNVI 2140-2151 KTVKLKGAAPLKILNIGN 2278-2295 RVKTLCLQKNTALWI 2413-2427 LLLDLSTRRLIRVI 2435-2448 IEVRKELAEKMRRT 2511-2524 > 5000 Probable CPP
  • 20. LRRK2: Not just Parkinsons!  LRRK2 role in Inflammatory Bowel Disease (Liu, Z. et al., (2011) Nature Immunology 12,10631070) LRRK2  LRRK2 sequesters NFAT in the cytoplasm  LRRK2 deficiency enhances susceptibility to experimental colitis and enhances nuclear localization of NFAT  NFAT Luciferase reporter assay (Armesilla, A.L. et al. (1999) Mol. Cell. Biol. 19, 2032-2043)  Bioportides facilitate relocation of NFAT from the cytoplasm to the nucleus?  Bioportides abrogate PMA and Ca2+ ionophore induced relocation of NFAT?  The role of the Immune System in PD
  • 21. Candidate Bioportides for Modulation of NFAT Translocation LRRK21310-1331 T2397M LRRK21124-1139 LRRK215-32 1 ARM LRRK21116-1136 I1122V ANK LRR LRRK22378-2399 LRRK21367-1386 ROC G2385R COR Kinase WD40 Leucine-Rich Repeat domain KLEQLILEGNKISGICSPLRLK GNKISGICSPLRLKELKILNL LRRK21116-1136 GNKISGVCSPLRLKELKILNL LRRK21116-1136 (I1122V) SPLRLKELKILNLSKN LRRK21124-1139 LRRK21310-1331 (C-terminal helix) Inhibits NFAT translocation 2527 Van Craenenbroeck et al., (2012) Purification and preliminary biochemical and structural characterisation of the leucine rich repeat domain of LRRK2. Biochem. Biophys. Acta 1824, 450 WT inhibits NFAT translocation Mutant enhances NFAT translocation Enhances NFAT translocation HIGCKAKDIIRFLQQRLKKAVP
  • 22. LRRK22378-2399 includes the very common T2397M risk allele for Crohn’s Disease LRRK21310-1331 T2397M LRRK21124-1139 LRRK215-32 1 ARM LRRK21116-1136 I1122V ANK LRRK2-derived bioportides modulate NFAT translocation. HEK293 cells were transiently transfected with a luciferase reporter vector (pNFAT-Ta-Luc; Clontech). Luciferase activity was measured as an indicator of NFAT translocation to the nucleus. Cells were stimulated with PMA (20 ng/ml) and the calcium ionophore A23187 (1 mM) for 16 hours. Luciferase activity was calculated as fold induction over the value of the reporter vector in un-stimulated cells. LRR LRRK22378-2399 LRRK21367-1386 ROC COR Kinase G2385R 2527 WD40
  • 23. Building Cell Selectivity into CPP Delivery • CPP can be readily incorporated into multimeric complexes • An inherent lack of specificity can be surmounted by the inclusion of tissue specific targeting peptides • Phage Display Technology has generated an abundance of tissue homing peptides
  • 24. Building Cell Selectivity into CPP Delivery Homing Peptides CPP Sequence
  • 25. Peptide-Based Glioma-Targeted Drug Delivery Vector gHoPe2 Coronal section of a mouse brain with U87 tumor in the right striatum. The tumour area is circled with a dotted line. (B) H&E stained hemisphere of brain and glioma. (C) The animals received an i.v. injection of FAM-labeled gHoPe2 3 h before tissue collection Liver Kidney Intracranial Tumour Model Intact brain Intracranial tumour FAM-gHo Eriste, E., Kurrikoff, K., Suhorutsenko, J., et al. Bioconjugate Chemistry (2013). In press Scale 100 μm. FAM-gHoPe2
  • 26. Building Cell Selectivity into CPP Delivery Activatable CPPs Exploitation of tissue specific endopeptidases cargo ++++++++++++++ cargo ++++++++++++++ -----------Cellular internalization impaired Cellular internalization MMP2 Matthias Hallbrink – NoPe (YTA4 + MMP-2 cleavage site + inactivationg region) -tumour imaging in vivo.
  • 27. The Challenge: Penetrating the Impenetrable Internal Volume Nucleus • • • Is reduced. Mature sperm lacks a variety of organelles: endoplasmic reticulum, Golgi apparatus, cytosolic ribosomes. • Once Spermatozoa are released into the seminiferous tubules, genomic transcription and translation have largely been silenced. Conventional molecular biology techniques are thus redundant. Modulation of sperm cell biology is restricted to cell permeable agents. Plasma Membrane • • • • Lipid composition of plasma membrane is highly polarized and compartmentalized. It appears to be incapable of endocytotic events. Static physical barrier Detergents are detrimental to protein function http://www.flickr.com/photos/wellcomeimages/5814253423/
  • 28. Understanding Sperm Biology with CPP Sperm are transcriptionally and translationary inactive Studies of their intracellular biology are restricted to cell permeable agents CPP are ideal vehicles for the study of sperm intracellular biology, from motility to capacitation and the acrosome reaction Can be easily isolated from bulls semen with supplemented EBSS containing 0.3% BSA (“swim up method”) sEBSS (0.3% BSA) semen
  • 29. Differential Intracellular Distribution of CPP 6 5 4 3 2 1 13 21 iM rV 1a R 10 P 0 Ta t 10 5Y M itP TP 10 iM it P Rho-C105Y (5mM) 7 C Rho-tat (5mM) + DIC 8 Rho-C105Y (5mM) tr at in Rho-penetratin (5mM) Mitotracker (500nM) Rho-tat (5mM) + DIC C105Y Fluorescence minus background (A.U.) Rho-penetratin (5mM) Tat Pe ne Penetratin Comparative analysis of CPP translocation efficacies into bovine spermatozoa. Spermatozoa were incubated with TAMRAlabelled CPP (5 mM) for 1 h at 37 oC. Data are mean + S.E.M. from 3 experiments performed in triplicate.
  • 30. The Mitochondrial-localising CPP Mitoparan Rho-MitP (5mM) Rho-MitP (5mM) Mitotracker (500 nM) Mitotracker (500 nM) merge Mitochondrial Midpiecei Rho-TP10 (5mM) Mitotracker (500 nM) merge
  • 31. . Protein Delivery Rho-TP10 (3 mM) + avidin Alexa Fluor® 488 (1 mM) Spermatozoa Merge DIC Avidin Merge Swiss 3T3 TP10 Swiss 3T3 Rho-TP10 (1 mM) + avidin Alexa Fluor® 488 (0.33 mM) Rho-TP10 (3 mM) + avidin Alexa Fluor® 488 (1 mM) Merge Avidin Merge Avidin TP10 Merge DIC TP10 Merge DIC
  • 32. Why are CPP unable to deliver large proteins into sperm? Translocation Kinetics of C105Y Endocytosis Incompetent Spermatozoa Swiss 3T3 Swiss 3T3 Spermatozoa Spermatozoa Transferrin Alexa Fluor® 488 (50 mg/ml) Transferrin Texas Red® (50 mg/ml) LysoTracker® Red (75 nM)) LysoTracker® Red (75 nM)) Dextran Texas Red® (10 mM) Dextran Texas Red® (10 mM) 10 8 t0.5 = 0.70 min 6 C105Y tat 4 rV1aR102-113 2 0 0 10 20 30 40 50 60 Fluorescence minus background (A.U.) Fluorescence minus background (A.U.) 10 12 8 6 t0.5 = 7.02 min rV1aR102-113 2 0 0 10 20 30 40 50 60 Time (min) Time (min) Internalisation occurred with first order saturable kinetics (F = Fmax x t/t0.5 + t, GraphPad Prism 5). C105Y tat 4 Cells were incubated at 37oC with TAMRA-labelled peptides (5mM) for the times indicated. Normalised data (compared to tat-assigned a value of 1) are expressed as mean fluorescence (minus background) + s.e.m. from 3 experiments performed in triplicate. Direct membrane translocation is the sole mechanism of CPP import into sperm
  • 33. Bioportides as Modulators of Human Sperm [Ca2+]i Signalling STIM1 ORAI1 Activating Region 442 334 EEELE CC1 (248-342) CC3 ? STIM1 (485685) KIKKK CC2 CC2 CC2 EEEL E +++ CC1 CC3 (364-388) (399-432) + --- Occluded SOAR CC1 KIKKK CC3 ? STIM1 (485685) Free SOAR Orai1 Plasma membrane  Progesterone-the best-characterised agonist of human sperm [Ca2+]i signalling.  Motility and the acrosome reaction  Biphasic [Ca2+]i response Store depletion Endoplasmic reticulum STIM1 STIM1371-392 H-KQLLVAKEGAEKIKKKRNTLFG-NH2 Scr- STIM1371-392 H-LKNKFKGVKLAEIEKQALKGTR-NH2
  • 34. A 140 B 120 100 80 60 Non-capacitating MitP nosangiotide tat 40 20 0 0 20 40 60 80 100 120 140 160 180 120 100 80 60 Capacitating camptide 40 Cyt c 5-13 C105Y 20 0 0 20 40 60 80 100 120 140 160 180 C 100 90 % cell viability 140 Time (min) Time (min) 110 % motile cells (*rapid) relative to controls % motile cells (*rapid) relative to controls CPP Import is Compatible with Sperm Motility and Viability A, B. Motility data were collected from human sperm cells treated with 5 mM CPP. 80 C105Y MitP tat iMitP iMP penetratin nosangiotide 70 60 50 40 30 Each peptide was tested on samples from 3 individual donors. Data are shown as % rapid cells from treated samples relative to that of controls and expressed as mean + s.e.m. *rapid cells = velocity (average path) ≥25 µms-1 and straightness ≥ 80%. C. Isolated bovine spermatozoa were treated with CPP for 1 h at the concentrations 20 indicated. Cell viability was measured by MTS conversion and expressed as a 10 percentage of those spermatozoa treated with vehicle alone (sEBSS). 0 -6.0 -5.5 -5.0 -4.5 log { [peptide] (M) }
  • 35. Conclusions  CPPs for site-specific delivery of bioactive cargoes into mammalian sperm  Cargo size is critical  CPP technologies as valuable tools for the investigation and modulation of fundamental processes of sperm physiology such as maturation, capacitation, motility, hyperactivation and fertilisation. Pantechnia Jones, S., Lukanowska, L., Suhorutsenko, J., Oxenham, S., Barratt, C., Publicover, S., Copolovici, D.M., Langel, Ü. and Howl, J. (2013) Intracellular translocation of cell penetrating peptides into spermatozoa. Human Reproduction DOI: 10.1093/humrep/def064.
  • 36. The Future for CPP Therapeutics Modifications to enhance stability are now surmountable Routes of administration Mechanisms for moving forward Marcus Evans Discovery and Evolution Summits Mass Screening, Formulation and Analogues
  • 37. Acknowledgements Scientific contributors University of Wolverhampton, UK John Howl Monika Lukanowska University of Birmingham, UK Michelle Farquhar Ashley Martin Steve Publicover MRC Protein Phosphorylation Unit, University of Dundee, UK Dario Alessi University of Dundee, UK Chris Barratt Senga Oxenham Department of Neurochemistry, Stockholm University, Sweden University of Tartu, Estonia Ulo Langel University of Manchester, UK Shant Kumar