This study investigated using a real-time PCR test targeting the RTX toxin gene of Kingella kingae on oropharyngeal swabs to diagnose K. kingae osteoarticular infections (OAI) in young children. The prospective study of 123 children aged 6-48 months presenting with atraumatic joint complaints found the oropharyngeal PCR test had a sensitivity of 100% and specificity of 90.5% for diagnosing K. kingae OAI compared to MRI and culture results. The findings suggest K. kingae is the primary cause of OAI in young children and that oropharyngeal PCR could improve recognition of these difficult to diagnose infections.