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National Aeronautics and
Space Administration
Kristen Dennis
Anson Call, Timothy Mayer, & Gary Olds
Utilizing Landsat to Detect
Ephemeral Water Sources in
Support of a USGS Feasibility
Assessment and Management
Strategy of Equids
NASA DEVELOP Program
• DEVELOP is a dual capacity
building 10-week program
that provides professional
with an opportunity to
improve and develop skills
in GIS and remote sensing
analyses using NASA Earth
observations. The team
members work with partner
organizations to produce
useful end products to hand
off by the end of the term.
● Wild horses and burros are cultural
icons of the American West
● Effective management requires
understanding of environmental
factors such as cover, forage, and
water
● Management areas are located in
semi-arid environment
● Surface water in this location is
ephemeral
● Goal: employ NASA Earth
observations to identify smaller scale
surface water sources
Overview
Sinbad Herd Management Area, Utah
(Image Credit: Sarah King, Savannah Summers, Tessa Ross)
Burros at a watering hole in Sinbad HMA, Utah.
(Image Credit: Savannah Summers)
Partners
Fort Collins Science Center,
Ecosystem Dynamics Branch
Dr. Kate Schoenecker, Ecologist
Utah State Office
Gus Warr, BLM Program Manager
BLM and USGS partnered to
study burro habitat selection at
the Sinbad Herd Management
Area
Objectives
Our study objectives include:
1)Testing the feasibility of using NASA earth
observations to detect surface water at small
scales
2) Determine the seasonality of the available
surface water resources
3) Up-scaling the methods by creating a toolset
and tutorial for use in other regions and
organizations
Credit: Mike Tweddell, BLM
Credit: Mike Tweddell, BLM
• Sinbad HMA and
surrounding area
• Emery County, Utah
• 61,126 ha / 875,071
Landsat pixels
• Semi-Arid with bimodal
precipitation regime
Study Area
Methodology
Sensor Input Data Software Algorithm Output
21 3 4 5
Water
Presence
Maps
Field Data
PRISM
Climate
Data
Google
Earth
Engine
R
Random
Forest
NASA Earth
Observations
Landsat 8 OLI
SRTM
Ocular
Digital
Survey
Data
Sentinel-1
SAR
Sampling approach 1:
Landsat 30m
Sampling approach 2:
Landsat 15m Panchromatic
Wet season map
Dry season map
• Sampling Strategy: Random Stratified
• 30m boxes aligned to Landsat pixels
• Used 2014 NAIP imagery to create training data
30m Digital Sampling
Bare groundWater Vegetation
Shadow Other
20%
30 m transformation to 15 m
50%
70%
70%
● IHS Pan-sharpening Method
● Converts the multispectral image
from RGB to intensity, hue, and
saturation
● This process reduced the pixel
size to ¼ the native
dimensions
● Sampling Strategy: Mixed Random and Supervised
○ 15m Sampling (Panchromatic)
● Used 2016 NAIP imagery to create training data
15m Digital Sampling
Bare groundWater Vegetation
Shadow Other
50%
● Observed 30m Dataset
○ Highly skewed: few pixels have
>40% water
● Observed 15m Dataset
● Still skewed, but includes more
pixels with high percentage of
surface water
Digital Sampling
Effort
% Water Within Pixels
30m Dataset
% Water Within Pixels
15m Dataset
10%
44%
MODELING WORKFLOW
SENTINEL-1
C-SAR
NDVI/NDWI
OTHER
PREDICTOR
INDICES
CLIP TO
STUDY
AREA
AND
MERGE
COMBINE
CSVs &
CREATE
THRESHOLD
COLUMNS
EXTRACT
DATA TO
POINTS
(WET &
DRY)
GENERATE
MODEL &
OUTPUT MAP
RUN
RANDOM
FOREST IN R
SRTM
TOPOGRAPHY
CLOUD-FREE
LANDSAT
MOSAIC
Predictor Variables
BLUE SWIR 1 NBR Sentinel-1 VV
GREEN SWIR 2 Tassled Cap B,G,W Slope
RED NIR NDMI Eastness
PAN NDVI GRVI Northness
Presence
Absence
• Process
• Rank variables using VSURF
• Covariate correlation plot
• Criteria for Removing
Variables
• Correlated above 0.8
• Remove least-predictive first
Random Forest
Threshold Results
30m 15m
Threshold 10 OOB: 14.58% OOB: 6.28%
Threshold 20 OOB: 12.96 OOB: 5.91%
Threshold 30 OOB: 9.26% OOB: 6.65%
Results
Landsat 30m Model
• Two Step Classification models
• Evaluation Metrics
• OOB: 9.26%
• AUC: 0.6347
Dry Season
Wet Season
More wet More dry No water presence
• Model Accuracy: 90.7407%
• Users Accuracy: 30.0%
Results
Landsat 15m Panchromatic
Model
• Two Step Classification models
• Evaluation Metrics
• OOB 5.91%
• AUC: 0.7655
Wet Season
Dry Season
More wet More dry No water presence
• Model Accuracy: 94.0850%
• User’s Accuracy: 94.5%
Conclusions
• Panchromatic model:
• Higher Resolution
• Improved training effort
• Provided markedly improved
reflectance models
• More accurately displays ephemeral
surface water in distinct seasons
• Preferred approach compared to LS
to employed to inform habitat
selection models
Credit: Anson Call
Conclusions continued
• Visual comparison to
the persistent surface
water
• JRC: this was the only
location identified as
surface water
• Visually outperformed
JRC
Credit: ESRI Baselayer
Errors and
Uncertainties
• Potential significant influence of
mixed pixel training data set.
• Miss classified pixels could result in skewed
model results.
• Landsat vs. Panchromatic input data
• NAIP availability resulted in training
data sets from the “Dry” season.
• Model was projected to a typical “Wet”
season scene.
Credit: Anson Call
Future Work
• Explore JRC compared to a single scene model
• Potentially expand the study area to include more HMA’s
• Collection of Remote Sensing oriented in-situ data by teams in the field
• For “Wet” and “Dry” periods
• Sentinel-2 MSI cross sensor implementation for increased resolution
• Explore more predictor variables
• Focusing on locations with ample LiDAR data may be useful as well
(Credit: Savannah Summersr)
• Dr. Paul Evangelista (Natural Resource Ecology Laboratory, Colorado State University)
• Dr. Catherine Jarnevich (USGS, Fort Collins Science Center)
• Nick Young (Natural Resource Ecology Laboratory, Colorado State University)
• Dr. Kate Schoenecker (USGS, Fort Collins Science Center)
• Dr. Sarah King (Ecosystem Science and Sustainability, Colorado State University)
This material contains modified Copernicus Sentinel data (2017), processed by ESA
Acknowledgements
This material is based upon work supported by NASA through contract NNL16AA05C and cooperative agreement NNX14AB60A. Any mention of a commercial product, service, or activity in this material does not constitute NASA endorsement.
Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Aeronautics and Space Administration and partner organizations.
References
Baig, M. H. A., Zhang, L., Shuai, T., & Tong, Q. (2014). Derivation of a tasselled cap transformation based on Landsat 8 at-satellite reflectance. Remote
Sensing Letters, 5(5), 423-431. doi:10.1080/2150704x.2014.915434
Breiman, L. (2001). Random forests. Machine Learning, 45(1), 5-32. doi:10.1023/a:1010933404324
Brown, B. T., & Johnson, R. R. (1983). The distribution of bedrock depressions (tinajas) as sources of surface water in Organ Pipe Cactus National Monument,
Arizona. Journal of the Arizona-Nevada Academy of Science, 18(2), 61-68.
Drake, J. C., Jenness, J. S., Calvert, J., & Griffis-Kyle, K. L. (2015). Testing a model for the prediction of isolated waters in the Sonoran Desert. Journal of Arid
Environments, 118, 1-8. doi:10.1016/j.jaridenv.2015.02.018
European Space Agency. (2013-2017). Sentinel Data, processed by ESA.
Genuer, R., Poggi, J.-M., & Tuleau-Malot, C. (2015). VSURF: An R package for variable selection using random forests. R Journal, 7(2), 19-33.
Jurgens, C. (1997). The modified normalized difference vegetation index (mNDVI) - a new index to determine frost damages in agriculture based on Landsat
TM data. International Journal of Remote Sensing, 18(17), 3583-3594. doi:10.1080/014311697216810
Ko, B. C., Kim, H. H., & Nam, J. Y. (2015). Classification of potential water bodies using Landsat 8 OLI and a combination of two boosted random forest
classifiers. Sensors, 15(6), 13763-13777. doi:10.3390/s150613763
This material is based upon work supported by NASA through contract NNL16AA05C and cooperative agreement NNX14AB60A. Any mention of a commercial product, service, or activity in this material does not constitute NASA endorsement.
Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Aeronautics and Space Administration and partner organizations.
References
NASA Jet Propulsion Laboratory (JPL). (2013-2017). NASA Shuttle Radar Topography Mission Global 1 arc second [Data set]. NASA EOSDIS Land Processes
DAAC. doi:10.5067/MEaSUREs/SRTM/SRTMGL1.003
Olthof, I. (2017). Mapping seasonal inundation frequency (1985-2016) along the St-John River, New Brunswick, Canada using the Landsat archive. Remote
Sensing, 9(2). doi:10.3390/rs9020143
Rotz, J. D., Abaye, A. O., Wynne, R. H., Rayburn, E. B., Scaglia, G., & Phillips, R. D. (2008). Classification of digital photography for measuring productive
ground cover. Rangeland Ecology & Management, 61(2), 245-248. doi:10.2111/07-011.1
U.S. Geological Survey Earth Resources Observation and Science Center. (2013-2017). Provisional Landsat OLI Surface Reflectance, TOA, 32-day NDVI, and
32-day NDMI. US Geological Survey. https://doi.org/10.5066/F7KD1VZ9
Wild Horse Annie Act - Public Law 86-234 (1959)
Zhou, Y., Dong, J., Xiao, X., Xiao, T., Yang, Z., Zhao, G., . . . Qin, Y. (2017). Open surface water mapping algorithms: a comparison of water-related spectral
indices and sensors. Water, 9(4). doi:10.3390/w9040256

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2018 ASPRS: Big Data: Utilizing Landsat to Detect Ephemeral Water Sources in Support of a USGS Feasibility Assessment and Management Strategy of Equals

  • 1. National Aeronautics and Space Administration Kristen Dennis Anson Call, Timothy Mayer, & Gary Olds Utilizing Landsat to Detect Ephemeral Water Sources in Support of a USGS Feasibility Assessment and Management Strategy of Equids
  • 2. NASA DEVELOP Program • DEVELOP is a dual capacity building 10-week program that provides professional with an opportunity to improve and develop skills in GIS and remote sensing analyses using NASA Earth observations. The team members work with partner organizations to produce useful end products to hand off by the end of the term.
  • 3. ● Wild horses and burros are cultural icons of the American West ● Effective management requires understanding of environmental factors such as cover, forage, and water ● Management areas are located in semi-arid environment ● Surface water in this location is ephemeral ● Goal: employ NASA Earth observations to identify smaller scale surface water sources Overview Sinbad Herd Management Area, Utah (Image Credit: Sarah King, Savannah Summers, Tessa Ross)
  • 4. Burros at a watering hole in Sinbad HMA, Utah. (Image Credit: Savannah Summers) Partners Fort Collins Science Center, Ecosystem Dynamics Branch Dr. Kate Schoenecker, Ecologist Utah State Office Gus Warr, BLM Program Manager BLM and USGS partnered to study burro habitat selection at the Sinbad Herd Management Area
  • 5. Objectives Our study objectives include: 1)Testing the feasibility of using NASA earth observations to detect surface water at small scales 2) Determine the seasonality of the available surface water resources 3) Up-scaling the methods by creating a toolset and tutorial for use in other regions and organizations Credit: Mike Tweddell, BLM Credit: Mike Tweddell, BLM
  • 6. • Sinbad HMA and surrounding area • Emery County, Utah • 61,126 ha / 875,071 Landsat pixels • Semi-Arid with bimodal precipitation regime Study Area
  • 7. Methodology Sensor Input Data Software Algorithm Output 21 3 4 5 Water Presence Maps Field Data PRISM Climate Data Google Earth Engine R Random Forest NASA Earth Observations Landsat 8 OLI SRTM Ocular Digital Survey Data Sentinel-1 SAR Sampling approach 1: Landsat 30m Sampling approach 2: Landsat 15m Panchromatic Wet season map Dry season map
  • 8. • Sampling Strategy: Random Stratified • 30m boxes aligned to Landsat pixels • Used 2014 NAIP imagery to create training data 30m Digital Sampling Bare groundWater Vegetation Shadow Other 20%
  • 9. 30 m transformation to 15 m 50% 70% 70% ● IHS Pan-sharpening Method ● Converts the multispectral image from RGB to intensity, hue, and saturation ● This process reduced the pixel size to ¼ the native dimensions
  • 10. ● Sampling Strategy: Mixed Random and Supervised ○ 15m Sampling (Panchromatic) ● Used 2016 NAIP imagery to create training data 15m Digital Sampling Bare groundWater Vegetation Shadow Other 50%
  • 11. ● Observed 30m Dataset ○ Highly skewed: few pixels have >40% water ● Observed 15m Dataset ● Still skewed, but includes more pixels with high percentage of surface water Digital Sampling Effort % Water Within Pixels 30m Dataset % Water Within Pixels 15m Dataset 10% 44%
  • 12. MODELING WORKFLOW SENTINEL-1 C-SAR NDVI/NDWI OTHER PREDICTOR INDICES CLIP TO STUDY AREA AND MERGE COMBINE CSVs & CREATE THRESHOLD COLUMNS EXTRACT DATA TO POINTS (WET & DRY) GENERATE MODEL & OUTPUT MAP RUN RANDOM FOREST IN R SRTM TOPOGRAPHY CLOUD-FREE LANDSAT MOSAIC Predictor Variables BLUE SWIR 1 NBR Sentinel-1 VV GREEN SWIR 2 Tassled Cap B,G,W Slope RED NIR NDMI Eastness PAN NDVI GRVI Northness
  • 13. Presence Absence • Process • Rank variables using VSURF • Covariate correlation plot • Criteria for Removing Variables • Correlated above 0.8 • Remove least-predictive first Random Forest Threshold Results 30m 15m Threshold 10 OOB: 14.58% OOB: 6.28% Threshold 20 OOB: 12.96 OOB: 5.91% Threshold 30 OOB: 9.26% OOB: 6.65%
  • 14. Results Landsat 30m Model • Two Step Classification models • Evaluation Metrics • OOB: 9.26% • AUC: 0.6347 Dry Season Wet Season More wet More dry No water presence • Model Accuracy: 90.7407% • Users Accuracy: 30.0%
  • 15. Results Landsat 15m Panchromatic Model • Two Step Classification models • Evaluation Metrics • OOB 5.91% • AUC: 0.7655 Wet Season Dry Season More wet More dry No water presence • Model Accuracy: 94.0850% • User’s Accuracy: 94.5%
  • 16. Conclusions • Panchromatic model: • Higher Resolution • Improved training effort • Provided markedly improved reflectance models • More accurately displays ephemeral surface water in distinct seasons • Preferred approach compared to LS to employed to inform habitat selection models Credit: Anson Call
  • 17. Conclusions continued • Visual comparison to the persistent surface water • JRC: this was the only location identified as surface water • Visually outperformed JRC Credit: ESRI Baselayer
  • 18. Errors and Uncertainties • Potential significant influence of mixed pixel training data set. • Miss classified pixels could result in skewed model results. • Landsat vs. Panchromatic input data • NAIP availability resulted in training data sets from the “Dry” season. • Model was projected to a typical “Wet” season scene. Credit: Anson Call
  • 19. Future Work • Explore JRC compared to a single scene model • Potentially expand the study area to include more HMA’s • Collection of Remote Sensing oriented in-situ data by teams in the field • For “Wet” and “Dry” periods • Sentinel-2 MSI cross sensor implementation for increased resolution • Explore more predictor variables • Focusing on locations with ample LiDAR data may be useful as well (Credit: Savannah Summersr)
  • 20. • Dr. Paul Evangelista (Natural Resource Ecology Laboratory, Colorado State University) • Dr. Catherine Jarnevich (USGS, Fort Collins Science Center) • Nick Young (Natural Resource Ecology Laboratory, Colorado State University) • Dr. Kate Schoenecker (USGS, Fort Collins Science Center) • Dr. Sarah King (Ecosystem Science and Sustainability, Colorado State University) This material contains modified Copernicus Sentinel data (2017), processed by ESA Acknowledgements
  • 21. This material is based upon work supported by NASA through contract NNL16AA05C and cooperative agreement NNX14AB60A. Any mention of a commercial product, service, or activity in this material does not constitute NASA endorsement. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Aeronautics and Space Administration and partner organizations. References Baig, M. H. A., Zhang, L., Shuai, T., & Tong, Q. (2014). Derivation of a tasselled cap transformation based on Landsat 8 at-satellite reflectance. Remote Sensing Letters, 5(5), 423-431. doi:10.1080/2150704x.2014.915434 Breiman, L. (2001). Random forests. Machine Learning, 45(1), 5-32. doi:10.1023/a:1010933404324 Brown, B. T., & Johnson, R. R. (1983). The distribution of bedrock depressions (tinajas) as sources of surface water in Organ Pipe Cactus National Monument, Arizona. Journal of the Arizona-Nevada Academy of Science, 18(2), 61-68. Drake, J. C., Jenness, J. S., Calvert, J., & Griffis-Kyle, K. L. (2015). Testing a model for the prediction of isolated waters in the Sonoran Desert. Journal of Arid Environments, 118, 1-8. doi:10.1016/j.jaridenv.2015.02.018 European Space Agency. (2013-2017). Sentinel Data, processed by ESA. Genuer, R., Poggi, J.-M., & Tuleau-Malot, C. (2015). VSURF: An R package for variable selection using random forests. R Journal, 7(2), 19-33. Jurgens, C. (1997). The modified normalized difference vegetation index (mNDVI) - a new index to determine frost damages in agriculture based on Landsat TM data. International Journal of Remote Sensing, 18(17), 3583-3594. doi:10.1080/014311697216810 Ko, B. C., Kim, H. H., & Nam, J. Y. (2015). Classification of potential water bodies using Landsat 8 OLI and a combination of two boosted random forest classifiers. Sensors, 15(6), 13763-13777. doi:10.3390/s150613763
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