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Machine Learning
Simulated Annealing
Intro
● Annealing – cooling temperature in metallargy
● An optimization algo inspired by Stastical
Mechanics
● Combination of –
1) MCMC Algo
2) Metropilos Algo
MCMC Algo
● Marcov Chain Monte Carlo
● Involves a Stochastic element (random)
● This helps computer to take random decisions
● Depends on state and transition between 2
states in MM
Metropolis Algo
● Randomly generates perturbations of current
state (approx soln)
● Accepts or rejects them based on how the
probability of state is effected
● Like a schedule of lovering temperature
Example – Minimizing a function
● F = (x1.....xn) and f>=0
● If f – represemtsenergy of a stastical
mechanical system
● We have states S=(x1....xn)
● Hence the probability of state S at temperature T
is given by
● p(S) =
Boltzmann-gibbs distribution
● If there are m states
● Limits P(S) = 1/m (is Sis at ground state)
t->0 = 0 (if otherwise)
● Hence we could stimulate the system at
temperature near 0, we get ground state
● But MCMC and Metropolis fail to generate
Minima
● Because, movement in state space is inhibited
by regions of low probability and by high energy
barriers
● Simulated Anneling overcomes this problem
● Starts at high temp and progresses to lower temp
● Annealing Schedule is given By -
●
●
● Hence as algo proceeds – inc in energy is less
likely
● And hence minima of energy could be acheived
Applications
● Molecular Dynamics
● PL docing
● Homology Modelling
Applications
● Molecular Dynamics
● PL docing
● Homology Modelling

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15.simulated anneling

  • 2. Intro ● Annealing – cooling temperature in metallargy ● An optimization algo inspired by Stastical Mechanics ● Combination of – 1) MCMC Algo 2) Metropilos Algo
  • 3. MCMC Algo ● Marcov Chain Monte Carlo ● Involves a Stochastic element (random) ● This helps computer to take random decisions ● Depends on state and transition between 2 states in MM
  • 4. Metropolis Algo ● Randomly generates perturbations of current state (approx soln) ● Accepts or rejects them based on how the probability of state is effected ● Like a schedule of lovering temperature
  • 5. Example – Minimizing a function ● F = (x1.....xn) and f>=0 ● If f – represemtsenergy of a stastical mechanical system ● We have states S=(x1....xn) ● Hence the probability of state S at temperature T is given by ● p(S) = Boltzmann-gibbs distribution
  • 6. ● If there are m states ● Limits P(S) = 1/m (is Sis at ground state) t->0 = 0 (if otherwise) ● Hence we could stimulate the system at temperature near 0, we get ground state
  • 7. ● But MCMC and Metropolis fail to generate Minima ● Because, movement in state space is inhibited by regions of low probability and by high energy barriers ● Simulated Anneling overcomes this problem
  • 8. ● Starts at high temp and progresses to lower temp ● Annealing Schedule is given By - ● ● ● Hence as algo proceeds – inc in energy is less likely ● And hence minima of energy could be acheived
  • 9. Applications ● Molecular Dynamics ● PL docing ● Homology Modelling
  • 10. Applications ● Molecular Dynamics ● PL docing ● Homology Modelling