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Herbarium Management
         :--:
 Multiple Taxonomies




                       CETAF / ISTC - Tervuren / 2013-02-2
General Thoughts

 History / Structure / Size of Herbarium Collection(s)
  Activities of internal staff (few K pa)
    purpose driven activities (specific coll.)
    random (general coll.)
  Acquisition of material from external sources
    personal herbaria (few K to 1 M)
    exchange of material (few K)
  Acquisition of abandoned institutions (few 10K)
  Merging of institutions / collections ( parallel worlds )



                                                  CETAF / ISTC - Tervuren / 2013-02-2
General Thoughts

 Purpose and Value of a Herbarium Collection
  Voucher material – Verification possible
  Basis for Floristic and Taxonomic work
  Historical evidence
  Nomenclatural acts




                                         CETAF / ISTC - Tervuren / 2013-02-2
General Thoughts


 Collaborative / Integrative / Open approach
  virtualized data reusable for others
  Lookup tables ( webservices ) for
   Person Names, incl. min. biographic data
   Geographic Names
   Scientific Names, incl. Common Name representations
  Classification Systems / Taxonomies
         ( publications / webservices )
  Data-Output via standard routes
         (rdf, xml, kml / ABCD, DwC, ESE, EDM)

                                               CETAF / ISTC - Tervuren / 2013-02-2
issues
 Taxonomy / Synonymy
  old vs. current(ly used) names and taxonomic concepts
  incongruent taxonomies


 Systems / Taxonomies available online
  PL / Tropicos / APweb / Euro+Med / FEu /
  MycoB / IFung / AlgaeB /
  CoL /


 analog Systems available
  infinite

                                                 CETAF / ISTC - Tervuren / 2013-02-2
filing issues

 finding specimens
     Arabidopsis thaliana / Cardaminopsis thaliana /
     basionym: Arabis thaliana
   Arrangement of specimens
   Annotation on specimens




                                               CETAF / ISTC - Tervuren / 2013-02-2
CETAF / ISTC - Tervuren / 2013-02-2
simplified data model



det.     actor / person / team     institution / collection



type           specimen                  names                  taxonomic backbone



         geographic reference            protologues            monographs
                                                                 revisions
                                                                    floras
                                                                article-level
  (G)UID
   reference outside local db (IPNI, IF, PL; HUH; geonames, BHL)
                                                              CETAF / ISTC - Tervuren / 2013-02-2
Building Services


      Motivation
       Virtual dynamic arrangement and analyses of Collections
           Poaceae Types
           Flora Projects ( Flora of Austria, Flora Iranica ) / native
           GBIF Austria / Synonymy
       Creation of Hierarchy at any rank
           Flora of Austria backbone




                                                        CETAF / ISTC - Tervuren / 2013-02-2
Online Resources


      Classifications / Taxonomies
       https://131.130.131.9/output/classificationBrowser.php
         YII framework / service based architecture


      Leverage
       http://www.gbif.at/index.php?id=4552




                                                   CETAF / ISTC - Tervuren / 2013-02-2
Open Questions


      Services
       persistent availability of external services
       caching vs. Incorporating of „used“ data
       GUIDs
      Data
       persistent availability of external services
       complementing DataStores
       forking / propagating Content
      Standards
       TDWG / CIDOC - CRM

                                                      CETAF / ISTC - Tervuren / 2013-02-2
Open Questions




      Filing
       Update or Conservative




                                CETAF / ISTC - Tervuren / 2013-02-2
Herbarium management multiple-taxonomies-20130227_istc_tervuren

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Herbarium management multiple-taxonomies-20130227_istc_tervuren

  • 1.
  • 2. Herbarium Management :--: Multiple Taxonomies CETAF / ISTC - Tervuren / 2013-02-2
  • 3. General Thoughts History / Structure / Size of Herbarium Collection(s) Activities of internal staff (few K pa) purpose driven activities (specific coll.) random (general coll.) Acquisition of material from external sources personal herbaria (few K to 1 M) exchange of material (few K) Acquisition of abandoned institutions (few 10K) Merging of institutions / collections ( parallel worlds ) CETAF / ISTC - Tervuren / 2013-02-2
  • 4. General Thoughts Purpose and Value of a Herbarium Collection Voucher material – Verification possible Basis for Floristic and Taxonomic work Historical evidence Nomenclatural acts CETAF / ISTC - Tervuren / 2013-02-2
  • 5. General Thoughts Collaborative / Integrative / Open approach virtualized data reusable for others Lookup tables ( webservices ) for Person Names, incl. min. biographic data Geographic Names Scientific Names, incl. Common Name representations Classification Systems / Taxonomies ( publications / webservices ) Data-Output via standard routes (rdf, xml, kml / ABCD, DwC, ESE, EDM) CETAF / ISTC - Tervuren / 2013-02-2
  • 6. issues Taxonomy / Synonymy old vs. current(ly used) names and taxonomic concepts incongruent taxonomies Systems / Taxonomies available online PL / Tropicos / APweb / Euro+Med / FEu / MycoB / IFung / AlgaeB / CoL / analog Systems available infinite CETAF / ISTC - Tervuren / 2013-02-2
  • 7. filing issues finding specimens Arabidopsis thaliana / Cardaminopsis thaliana / basionym: Arabis thaliana Arrangement of specimens Annotation on specimens CETAF / ISTC - Tervuren / 2013-02-2
  • 8. CETAF / ISTC - Tervuren / 2013-02-2
  • 9. simplified data model det. actor / person / team institution / collection type specimen names taxonomic backbone geographic reference protologues monographs revisions floras article-level (G)UID reference outside local db (IPNI, IF, PL; HUH; geonames, BHL) CETAF / ISTC - Tervuren / 2013-02-2
  • 10. Building Services Motivation Virtual dynamic arrangement and analyses of Collections Poaceae Types Flora Projects ( Flora of Austria, Flora Iranica ) / native GBIF Austria / Synonymy Creation of Hierarchy at any rank Flora of Austria backbone CETAF / ISTC - Tervuren / 2013-02-2
  • 11. Online Resources Classifications / Taxonomies https://131.130.131.9/output/classificationBrowser.php YII framework / service based architecture Leverage http://www.gbif.at/index.php?id=4552 CETAF / ISTC - Tervuren / 2013-02-2
  • 12. Open Questions Services persistent availability of external services caching vs. Incorporating of „used“ data GUIDs Data persistent availability of external services complementing DataStores forking / propagating Content Standards TDWG / CIDOC - CRM CETAF / ISTC - Tervuren / 2013-02-2
  • 13. Open Questions Filing Update or Conservative CETAF / ISTC - Tervuren / 2013-02-2