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Methodology and Tools for Research:
Knowledge production
Yannick Prié
Polytech Nantes, University of Nantes
Master DMKM, 2015-2016
CC	BY-SA	4.0
Attribution-ShareAlike 4.0
International (CC BY-SA 4.0)
•  This course "Methodology and Tools for Research: Knowledge
production" by Yannick Prié is licensed CC BY-SA 4.0
•  This license covers the general organization of the material, the
textual content, the figures, etc. except where indicated.
•  This license means that you can share and adapt this course,
provided you give appropriate credit to the author and distribute your
contributions under the same license as the original
◦  for more information about this license, see
http://creativecommons.org/licenses/by-sa/4.0/
•  For any comment on this course, do not hesitate to contact me:
yannick.prie@univ-nantes.fr or @yprie
Objectives of this course
•  Understand several notions:
◦  Knowledge production
◦  Validation of claims
◦  Peer assessment
◦  Scientific disciplines
•  And also
◦  Ethics in research
◦  Science and society
Outline
•  Scientific knowledge
•  Scientific disciplines
•  Studying science
•  Science and society
Outline
•  Scientific knowledge
•  Scientific disciplines
•  Studying science
•  Science and society
Knowledge (1)
1.  facts, information, and skills acquired by a
person through experience or education; the
theoretical or practical understanding of a
subject
◦  what is known in a particular field or in total; facts
and information:
◦  (philosophy) true, justified belief; certain
understanding, as opposed to opinion.
2.  awareness or familiarity gained by experience
of a fact or situation
(Definition © 2013 Oxford University Press. All rights reserved)
Knowledge (2)
•  One of the most important notion of philosophy
◦  what is knowledge? what is it about? how is it possible to
know something? is knowledge related to truthiness? etc.
•  Some oppositions
◦  implicit / explicit
•  to know how to swim / to know the name of the current president
of France
◦  informal / formal
•  to know how to order in a restaurant / to know Pythagoras
theorem
◦  unmethodical / systematic
•  to know that a taxi ride is too expensive / to know the average
price for a ride in a particular city
Scientific knowledge production (1)
•  Scientific knowledge = claims about reality
◦  descriptive knowledge: describe (resp. explain) what happened
◦  predictive knowledge: predict what will happen under certain
circumstances (causes and effects)
•  Empirical research
◦  acquire knowledge by observation or experience that support or
invalidate claims
•  Use of logics and mathematics
◦  assert that a reasoning is sound, check the consistency of a
model, statistically evaluate experimental results with regards to
claims, prove theorems, etc.
Scientific knowledge production (2)
•  Scientists are in charge of producing scientific
knowledge
Google	image	first	result	page,	dec	2015,	©	Google	|		images	©	by	their	owners
Validation of scientific knowledge (1)
•  Scientific knowledge is more than mere
individual claims
◦  it should stand independently of the scientists
◦  need for external validation
•  Validation is based on “standardized
intersubjectivity”
◦  intersubjectivity: agreement between several
individual on the fact that something is meaningful
◦  standardized: there are rules
•  on how to reach this agreement
•  on what can be the subject of the agreement
Validation of scientific knowledge (2)
•  Peer validation
◦  only peers of a scientist can validate the fact that this
scientist has produced valuable knowledge
◦  because they also are scientists hence share the
rules
•  Example of validation checks
◦  correction of a proof
◦  reproducibility of an experiment
◦  soundness of a reasoning
◦  originality of the work
◦  ...
Accumulation of scientific knowledge (1/2)
•  Growth of scientific knowledge never stops
◦  The larger the island of knowledge, the longer the
shoreline of wonder (Ralph W. Sockman)
•  Evolutions
◦  incremental growth: one step after another step
◦  breakthroughs: rare but happen
◦  (obsolescence: something is proven false, or can be
better described)
Accumulation of scientific knowledge (2/2)
•  Needs
◦  validation: being able to assess work originality
◦  creation: being able to to build on others’ works
•  Growth is based on systematic accumulation of
physical supports of scientific knowledge
◦  mainly written supports (publications)
Socio-technical organisation for knowledge
production
•  Universities
◦  provide places of work and discussion
•  Publication processes
◦  provide scientific knowledge validation workflows
•  Publishers
◦  provide physical supports, and diffusion through
communication means
•  Conferences
◦  provide means for scientists to meet and discuss
•  Libraries
◦  support accumulation of physical supports
Scientific ethics
•  Scientists are committed to the functioning of
science, mainly regarding evaluation
◦  accepting peer evaluation
◦  honesty for evaluating others’ works
◦  citing others' works
◦  not stealing others' works
◦  honesty with one’s actual results
◦  etc.
•  Science would not work without ethics…
…but of course it is not as simple
◦  see later
Outline
•  Scientific knowledge
•  Scientific disciplines
•  Studying science
•  Science and society
This is not a bird
©	Simon	Porter,	with	autorisaGon	-	hHp://mrsimonporter.wikispaces.com/Physics+and+IB+memes
Validation and “standardized intersubjectivity”
•  All the researchers adhere to a set of general
rules
◦  peer assessment, ethics, logical reasoning, etc.
•  Not all the researchers work on the same
domain
◦  e.g. sociology, biology, philosophy, computer science
•  Not all the researchers agree with each other on
◦  means of validations, what is an experiment, what is
“good” science, etc.
Distinctions amid Science
•  Natural science
◦  universal laws, natural objects
•  Cultural science
◦  contingent laws, cultural objects
•  Hard science vs soft science
◦  not only methods, but also perceived legitimacy
(rigor, mathematics, predictions, experiments)
◦  Physics/Chemistry > Biology > Psychology > Social
sciences
•  Exercise: where is computer science?
Ernst	Cassirer		
is	Public	Domain
Scientific disciplines (1)
•  Community of researchers, characterised by
◦  a common object (research domain): e.g. life, law,
matter, information, etc.
◦  the associated scientific practices : community of
practice
•  commons means of validation, methods, ways of
apprehending the world, etc.
◦  the associated body of knowledge
•  corpus of scientific material
Scientific disciplines (2)
•  Belonging to a discipline:
◦  agreeing to its object, methods, limits of body of
knowledge
◦  participating to the growth of that body of knowledge
•  Hence being recognized as a peer by the others
members of the community
« a sociologist is a guy who is considered a
sociologist by sociologists »
Sub-disciplines
•  Scientists from the same discipline are supposed to be
able to talk to each other
◦  but disciplines are huge with several thousands of researchers,
all hyper-specialised
•  There are many sub-disciplines
◦  Chemistry (wk): Analytical chemistry, Biochemistry, Inorganic
chemistry, Materials chemistry, Neurochemistry, Nuclear chemistry ,
Organic chemistry, Physical chemistry, Theoretical chemistry
◦  Computer science: networking, HCI, Language theory, Pattern
recognition, Databases, Image processing…
•  Not mentioning sub-sub-disciplines !
Evolution of disciplines
•  Scientific knowledge evolve…
•  … so do disciplines
Frontiers of disciplines
•  The frontiers of disciplines are always
challenged
•  Quite comfortable to be at the core of the
discipline
◦  quite stable
◦  full agreement with the
values of the community
•  Not so comfortable to be
at the edge
◦  more rapid evolution
◦  more criticisable
[ pluri-| inter-| trans- ]disciplinary practices (1)
•  Pluri-disciplinarity (or multi): several disciplines
within a same team to build something in common
◦  variety of approaches, innovation
•  Inter-disciplinarily: using approaches from another
discipline, enhancing one’s method with others’
◦  synthesis of approaches
•  Trans-disciplinarily: building a common approach,
with belongs neither to a discipline nor to the other
◦  common object, common approach
-	
+	
Difficulty	
Reward?
Mapping science
	hHp://scimaps.org/maps/map/maps_of_science_fore_50/detail-	©	Cyberinfrastructure	for	Network	Science	Center
[ pluri-| inter-| trans- ]disciplinary practices (2)
•  It is difficult
◦  not getting (publishable) results easily
◦  understanding another discipline (objects, methods, body
of work)
•  Some qualities are needed
◦  deep respect of the point of view of the other
◦  confidence that an agreement will eventually be reached
◦  patience and hard work to be able to build that agreement
•  But it is rewarding
◦  revolutionary ideas often come from inter- or trans-
disciplinary work
◦  new disciplines emerge from trans-disciplinary work
•  e.g. bio-informatics
Outline
•  Scientific knowledge
•  Scientific disciplines
•  Studying science
•  Science and society
Taking science as the object of science
•  Epistemology
◦  Epistēmē: science, knowledge - Logos: discourse
◦  Meaning 1: Theory of knowledge
◦  Meaning 2: Philosophy of science
•  Study of how knowledge is produced, in general or
considering particular disciplines
•  Thomas Kühn: notion of paradigm
•  Sociology of science
◦  Studying science as a social activity
Science and writing
•  For creating knowledge
◦  Husserl’s Origin of geometry:
•  no geometry, no mathematics possible without writing
◦  need for “externalising ideas” so as to be able to
consider them, verify reasoning, etc.
•  For evaluating knowledge
◦  only externalised written scientific knowledge can be
evaluated
•  For spreading knowledge
◦  written scientific knowledge can circulate
Edmund	Husserl		
is	Public	Domain
Science and Janus
•  Latour Laboratory Life:
The Construction of Scientific Facts:
◦  Scientific activity has two faces like Janus
•  See for instance recent (jan 2013) twitter hashtag
#overlyhonestmethods
Day	to	day		
laboratory	life:	
humans,	mulGple	goals,	
various	experiments,	strange	
phenomena,	luck,	etc.	
External	presenta<on	of	
scien<fic	work:	
unique	direcGon	(from	
hypothesis	to	validaGon	to	
conclusion),	non-importance	
of	scienGsts,	etc.	
Bruno	Latour	in	Gothenburg			
by	Jerzy	Kociatkiewicz		
is	CC	BY	SA	2.0	
Janus	coin	is	Public	Domain
Science and scientists
•  Scientific activity involves lots of sub-activities
not directly related to scientific production
◦  management, getting funds, etc.
•  Researchers are humans too
◦  they have strategies of power
•  for science / for career
(hopefully connected :-)
◦  they can cheat
•  certainly a minority
◦  ...
mad	scienGst		by	John	Conner		is	CC	BY	SA	3.0
Outline
•  Scientific knowledge
•  Scientific disciplines
•  Studying science
•  Science and society
Peer validation ≠ market or society “validation”
•  Internal to science
◦  new knowledge is acquired, the world changes
because we think it differently
•  new concepts: e.g. ecology
•  new objects: e.g. quasars
◦  criteria = actual knowledge production
•  External to science
◦  knowledge discovery has consequences on society
•  new technical tools and industrial development
•  new ways of thinking society
◦  criteria = impact on society, “usefulness“
Science and society (1)
•  Scientists are appointed by society to produce scientific
knowledge, they need support for
◦  doing research
◦  accumulating knowledge
•  Social organisations are devoted to providing such
support
◦  universities, laboratories
◦  libraries
◦  funding bodies
◦  scientific publishers
◦  ...
•  Most are publicly funded
ScienGst	Looking	Thorugh	Microscope		
by	anonymous	is	Public	Domain
Science and society (2)
•  Society is conscious that research is very important for its
development
•  put not always for the sake of
knowledge creation…
◦  Utilitarian view on science
•  produce wealth!
◦  we need growth
•  produce prestige!
◦  big equipment, Nobels
•  produce ROI!
◦  funding only “useful” research
•  meet my timescale!
◦  few years vs several decades (long term research)
•  produce certainty!
◦  sometimes contradictory with what science is
Astronaut	Buzz	Aldrin	on	the	moon		
by	NASA	is	Public	Domain
Scientist (2013)
•  Scientists are in charge of producing scientific
knowledge
Google	image	first	result	page,	oct	2013,	©	Google	|		images	©	by	their	owners
Scientist (2012)
Google	image	first	result	page,	oct	2012,	©	Google	|	images	©	by	their	owners

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Tools and Methodology for Research: Knowledge Production

  • 1. Methodology and Tools for Research: Knowledge production Yannick Prié Polytech Nantes, University of Nantes Master DMKM, 2015-2016 CC BY-SA 4.0
  • 2. Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) •  This course "Methodology and Tools for Research: Knowledge production" by Yannick Prié is licensed CC BY-SA 4.0 •  This license covers the general organization of the material, the textual content, the figures, etc. except where indicated. •  This license means that you can share and adapt this course, provided you give appropriate credit to the author and distribute your contributions under the same license as the original ◦  for more information about this license, see http://creativecommons.org/licenses/by-sa/4.0/ •  For any comment on this course, do not hesitate to contact me: yannick.prie@univ-nantes.fr or @yprie
  • 3. Objectives of this course •  Understand several notions: ◦  Knowledge production ◦  Validation of claims ◦  Peer assessment ◦  Scientific disciplines •  And also ◦  Ethics in research ◦  Science and society
  • 4. Outline •  Scientific knowledge •  Scientific disciplines •  Studying science •  Science and society
  • 5. Outline •  Scientific knowledge •  Scientific disciplines •  Studying science •  Science and society
  • 6. Knowledge (1) 1.  facts, information, and skills acquired by a person through experience or education; the theoretical or practical understanding of a subject ◦  what is known in a particular field or in total; facts and information: ◦  (philosophy) true, justified belief; certain understanding, as opposed to opinion. 2.  awareness or familiarity gained by experience of a fact or situation (Definition © 2013 Oxford University Press. All rights reserved)
  • 7. Knowledge (2) •  One of the most important notion of philosophy ◦  what is knowledge? what is it about? how is it possible to know something? is knowledge related to truthiness? etc. •  Some oppositions ◦  implicit / explicit •  to know how to swim / to know the name of the current president of France ◦  informal / formal •  to know how to order in a restaurant / to know Pythagoras theorem ◦  unmethodical / systematic •  to know that a taxi ride is too expensive / to know the average price for a ride in a particular city
  • 8. Scientific knowledge production (1) •  Scientific knowledge = claims about reality ◦  descriptive knowledge: describe (resp. explain) what happened ◦  predictive knowledge: predict what will happen under certain circumstances (causes and effects) •  Empirical research ◦  acquire knowledge by observation or experience that support or invalidate claims •  Use of logics and mathematics ◦  assert that a reasoning is sound, check the consistency of a model, statistically evaluate experimental results with regards to claims, prove theorems, etc.
  • 9. Scientific knowledge production (2) •  Scientists are in charge of producing scientific knowledge Google image first result page, dec 2015, © Google | images © by their owners
  • 10. Validation of scientific knowledge (1) •  Scientific knowledge is more than mere individual claims ◦  it should stand independently of the scientists ◦  need for external validation •  Validation is based on “standardized intersubjectivity” ◦  intersubjectivity: agreement between several individual on the fact that something is meaningful ◦  standardized: there are rules •  on how to reach this agreement •  on what can be the subject of the agreement
  • 11. Validation of scientific knowledge (2) •  Peer validation ◦  only peers of a scientist can validate the fact that this scientist has produced valuable knowledge ◦  because they also are scientists hence share the rules •  Example of validation checks ◦  correction of a proof ◦  reproducibility of an experiment ◦  soundness of a reasoning ◦  originality of the work ◦  ...
  • 12. Accumulation of scientific knowledge (1/2) •  Growth of scientific knowledge never stops ◦  The larger the island of knowledge, the longer the shoreline of wonder (Ralph W. Sockman) •  Evolutions ◦  incremental growth: one step after another step ◦  breakthroughs: rare but happen ◦  (obsolescence: something is proven false, or can be better described)
  • 13. Accumulation of scientific knowledge (2/2) •  Needs ◦  validation: being able to assess work originality ◦  creation: being able to to build on others’ works •  Growth is based on systematic accumulation of physical supports of scientific knowledge ◦  mainly written supports (publications)
  • 14. Socio-technical organisation for knowledge production •  Universities ◦  provide places of work and discussion •  Publication processes ◦  provide scientific knowledge validation workflows •  Publishers ◦  provide physical supports, and diffusion through communication means •  Conferences ◦  provide means for scientists to meet and discuss •  Libraries ◦  support accumulation of physical supports
  • 15. Scientific ethics •  Scientists are committed to the functioning of science, mainly regarding evaluation ◦  accepting peer evaluation ◦  honesty for evaluating others’ works ◦  citing others' works ◦  not stealing others' works ◦  honesty with one’s actual results ◦  etc. •  Science would not work without ethics… …but of course it is not as simple ◦  see later
  • 16. Outline •  Scientific knowledge •  Scientific disciplines •  Studying science •  Science and society
  • 17. This is not a bird © Simon Porter, with autorisaGon - hHp://mrsimonporter.wikispaces.com/Physics+and+IB+memes
  • 18. Validation and “standardized intersubjectivity” •  All the researchers adhere to a set of general rules ◦  peer assessment, ethics, logical reasoning, etc. •  Not all the researchers work on the same domain ◦  e.g. sociology, biology, philosophy, computer science •  Not all the researchers agree with each other on ◦  means of validations, what is an experiment, what is “good” science, etc.
  • 19. Distinctions amid Science •  Natural science ◦  universal laws, natural objects •  Cultural science ◦  contingent laws, cultural objects •  Hard science vs soft science ◦  not only methods, but also perceived legitimacy (rigor, mathematics, predictions, experiments) ◦  Physics/Chemistry > Biology > Psychology > Social sciences •  Exercise: where is computer science? Ernst Cassirer is Public Domain
  • 20. Scientific disciplines (1) •  Community of researchers, characterised by ◦  a common object (research domain): e.g. life, law, matter, information, etc. ◦  the associated scientific practices : community of practice •  commons means of validation, methods, ways of apprehending the world, etc. ◦  the associated body of knowledge •  corpus of scientific material
  • 21. Scientific disciplines (2) •  Belonging to a discipline: ◦  agreeing to its object, methods, limits of body of knowledge ◦  participating to the growth of that body of knowledge •  Hence being recognized as a peer by the others members of the community « a sociologist is a guy who is considered a sociologist by sociologists »
  • 22. Sub-disciplines •  Scientists from the same discipline are supposed to be able to talk to each other ◦  but disciplines are huge with several thousands of researchers, all hyper-specialised •  There are many sub-disciplines ◦  Chemistry (wk): Analytical chemistry, Biochemistry, Inorganic chemistry, Materials chemistry, Neurochemistry, Nuclear chemistry , Organic chemistry, Physical chemistry, Theoretical chemistry ◦  Computer science: networking, HCI, Language theory, Pattern recognition, Databases, Image processing… •  Not mentioning sub-sub-disciplines !
  • 23. Evolution of disciplines •  Scientific knowledge evolve… •  … so do disciplines
  • 24. Frontiers of disciplines •  The frontiers of disciplines are always challenged •  Quite comfortable to be at the core of the discipline ◦  quite stable ◦  full agreement with the values of the community •  Not so comfortable to be at the edge ◦  more rapid evolution ◦  more criticisable
  • 25. [ pluri-| inter-| trans- ]disciplinary practices (1) •  Pluri-disciplinarity (or multi): several disciplines within a same team to build something in common ◦  variety of approaches, innovation •  Inter-disciplinarily: using approaches from another discipline, enhancing one’s method with others’ ◦  synthesis of approaches •  Trans-disciplinarily: building a common approach, with belongs neither to a discipline nor to the other ◦  common object, common approach - + Difficulty Reward?
  • 27. [ pluri-| inter-| trans- ]disciplinary practices (2) •  It is difficult ◦  not getting (publishable) results easily ◦  understanding another discipline (objects, methods, body of work) •  Some qualities are needed ◦  deep respect of the point of view of the other ◦  confidence that an agreement will eventually be reached ◦  patience and hard work to be able to build that agreement •  But it is rewarding ◦  revolutionary ideas often come from inter- or trans- disciplinary work ◦  new disciplines emerge from trans-disciplinary work •  e.g. bio-informatics
  • 28. Outline •  Scientific knowledge •  Scientific disciplines •  Studying science •  Science and society
  • 29. Taking science as the object of science •  Epistemology ◦  Epistēmē: science, knowledge - Logos: discourse ◦  Meaning 1: Theory of knowledge ◦  Meaning 2: Philosophy of science •  Study of how knowledge is produced, in general or considering particular disciplines •  Thomas Kühn: notion of paradigm •  Sociology of science ◦  Studying science as a social activity
  • 30. Science and writing •  For creating knowledge ◦  Husserl’s Origin of geometry: •  no geometry, no mathematics possible without writing ◦  need for “externalising ideas” so as to be able to consider them, verify reasoning, etc. •  For evaluating knowledge ◦  only externalised written scientific knowledge can be evaluated •  For spreading knowledge ◦  written scientific knowledge can circulate Edmund Husserl is Public Domain
  • 31. Science and Janus •  Latour Laboratory Life: The Construction of Scientific Facts: ◦  Scientific activity has two faces like Janus •  See for instance recent (jan 2013) twitter hashtag #overlyhonestmethods Day to day laboratory life: humans, mulGple goals, various experiments, strange phenomena, luck, etc. External presenta<on of scien<fic work: unique direcGon (from hypothesis to validaGon to conclusion), non-importance of scienGsts, etc. Bruno Latour in Gothenburg by Jerzy Kociatkiewicz is CC BY SA 2.0 Janus coin is Public Domain
  • 32. Science and scientists •  Scientific activity involves lots of sub-activities not directly related to scientific production ◦  management, getting funds, etc. •  Researchers are humans too ◦  they have strategies of power •  for science / for career (hopefully connected :-) ◦  they can cheat •  certainly a minority ◦  ... mad scienGst by John Conner is CC BY SA 3.0
  • 33. Outline •  Scientific knowledge •  Scientific disciplines •  Studying science •  Science and society
  • 34. Peer validation ≠ market or society “validation” •  Internal to science ◦  new knowledge is acquired, the world changes because we think it differently •  new concepts: e.g. ecology •  new objects: e.g. quasars ◦  criteria = actual knowledge production •  External to science ◦  knowledge discovery has consequences on society •  new technical tools and industrial development •  new ways of thinking society ◦  criteria = impact on society, “usefulness“
  • 35. Science and society (1) •  Scientists are appointed by society to produce scientific knowledge, they need support for ◦  doing research ◦  accumulating knowledge •  Social organisations are devoted to providing such support ◦  universities, laboratories ◦  libraries ◦  funding bodies ◦  scientific publishers ◦  ... •  Most are publicly funded ScienGst Looking Thorugh Microscope by anonymous is Public Domain
  • 36. Science and society (2) •  Society is conscious that research is very important for its development •  put not always for the sake of knowledge creation… ◦  Utilitarian view on science •  produce wealth! ◦  we need growth •  produce prestige! ◦  big equipment, Nobels •  produce ROI! ◦  funding only “useful” research •  meet my timescale! ◦  few years vs several decades (long term research) •  produce certainty! ◦  sometimes contradictory with what science is Astronaut Buzz Aldrin on the moon by NASA is Public Domain
  • 37. Scientist (2013) •  Scientists are in charge of producing scientific knowledge Google image first result page, oct 2013, © Google | images © by their owners