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               Antibody Arrays for Biosimilar Conformational
                                      Comparability Analysis
3-D Conformational comparability Analysis




Process-related Impurity Analysis
Array Bridge provides ELISA based analysis for Host Cell      a homologous counterpart in the human body, these
Proteins from CHO (Chinese Hamster Ovary ) and E. coli        antibodies could interfere with the physiological function
host. The development and production of the ELISA kits        of the protein through cross-reactivity. Thirdly, HCPs
are under cGMP to ensure uninterrupted product supply         themselves could act as agonist or antagonist to interfere
and consistent quality. Host Cell Proteins are proteins and   with the human normal metabolism. Because of these
their derivatives from the hosts used for biologics           reasons, in biologics development, significant resource is
development and production. Higher levels of HCP will         allocated during process development to reduce HCP
pose risks in several areas.                                  levels in the biologics product.

First, HCPs from CHO and E. coli could be recognized by
the human immune system as no self molecules, eliciting
an immune reaction. Depending on the level and composi-
tion of the HCPs, the reaction could range from none and
mild reaction to severe reactions. Secondly, some HCPs
could induce the production of antibodies. If the HCP has
Protein Conformational Arrays, a new
approach for biologics three–dimensional
structure comparability analysis

Protein Conformational Array ELISA provides a                                                       The FDA guidance
systematic, sensitive and robust comparability testing                                              further stated that
for biologics (therapeutic proteins) at molecular level.                                            “The three dimensional
An array of polyclonal antibodies was designed systemati-                                           conformation of a
cally covering the whole biologics sequence and the assay                                           protein is an important
is in an easy-to-use ELISA format, these Protein Confor-                                            factor in its biological
mational Array ELISAs (PCA ELISA) can provide valuable                                              function. Protein
information on the 3-D structure and heterogeneity of                                               generally exhibit
biologics, and can be used at many stages and aspects                                               complex three-dimen-
of biologics development including cell line selection,                                             sional conformations
process development, formulation development and                                                    (tertiary structure
product release testing.                                                                            and, in some cases,
                                                                quaternary structure) due to their large size and the
It is known that the clinical and biological properties of a    rotational characteristics of protein alpha carbons.
biologics are the results of their basic properties such as     The resulting flexibility enables dynamic, but subtle,
amino acid sequence and three-dimensional structure, as         changes in protein conformation over time, some of which
well as the production, purification, formulation and storage   may be absolutely required for functional activity.”
conditions. One of the major challenges in biologics develop-   “... at the same time, a protein’s three-dimensional
ment is protein immunogenicity, unwanted immunogenicity         conformation can often be difficult to define precisely
could lead to reduced or loss of drug efficacy, altered         using current physiochemical analytical technology.”
pharmacokinetics (PK), general immune and hypersensitivity
reaction, and neutralization of the natural counterpart in      Because of the close relation between protein conforma-
the human body. Multiple studies have demonstrated that         tion and its immunogenicity, several analytical techniques
protein conformation stability is closely related to its        and bioassays have been used to probe conformational
immunogenicity. One recent study indicated that a protein       comparability in biologics. For example, protein intrinsic
has a threshold of conformational stability to prevent the      fluorescence, analytical ultracentrifugation, gel filtration,
immunogenicity of foreign proteins. Another strong indica-      light scattering and bioassays have all been employed for
tion that protein conformation is closely related to its        protein conformational analysis. However these approach-
immunogenicity is through the study of protein aggregation.     es have their respective limitations, generally they lack
Multiple studies showed that protein aggregation is a major     the desired sensitivity, coverage and throughput to
source of immunogenicity.                                       provide the information about protein 3-D structure.
                                                                In the case of monoclonal antibody biologics, Bioassays
In the recently published document for biosimilar               developed based on target-antibody recognition will
development by the Food and Drug Administration                 detect some changes in the CDR (complementarity
(Guidance for Industry, Quality Considerations in               determining region) regions, but can’t measure changes
Demonstrating Biosimilarity to a Reference Protein              in the rest of the biologics molecule.
Product, FDA, February 2012), FDA recommends
“Extensive, robust comparative physicochemical and              The Protein Conformational Array developed specifically
functional studies should be performed to evaluate              toward monoclonal antibody drugs could provide a
whether the proposed biosimilar product and the                 sensitive, systematic and efficient way to measure protein
reference product are highly similar. A meaningful              conformational comparability. The protein conformational
assessment as to whether the proposed biosimilar                array antibodies are developed from the specific sequence
product is highly similar to the reference product              of each monoclonal antibody drug; about 30 different
depends on, among other things, the capabilities of             antibodies were developed to provide a systematic
available state-of-the-art analytical assays to                 coverage of the molecule. Studies using marketed
assess, for example, the molecular weight of the                monoclonal antibody drugs indicated that these confor-
protein, complexity of the protein (higher order                mational arrays can provide detailed information about
structure and post-translational modification), degree          the molecule and detect changes that may not be detected
of heterogeneity, functional properties, impurity               by the aforementioned techniques including bioassays.
profile, and the degradation profiles denoting stability.”
Application — 1
      Comparison between marketed monoclonal
      antibody drug and biosimilar candidate.

                                          Comparison of Three Lots of Innovator Molecule and a Biosimilar Candidate
            2.5


             2
OD 450 nm




            1.5


              1


            0.5


              0
                  Ab1
                        Ab2
                              Ab3
                                    Ab4
                                          Ab5
                                                Ab6
                                                      Ab7
                                                            Ab8
                                                                  Ab9
                                                                        Ab10
                                                                               Ab11
                                                                                      Ab12
                                                                                             Ab13
                                                                                                    Ab14
                                                                                                            Ab15
                                                                                                                   Ab16
                                                                                                                          Ab17
                                                                                                                                 Ab18
                                                                                                                                        Ab19
                                                                                                                                               Ab20
                                                                                                                                                      Ab21
                                                                                                                                                             Ab22
                                                                                                                                                                    Ab23
                                                                                                                                                                           Ab24
                                                                                                                                                                                  Ab25
                                                                                                                                                                                         Ab26
                                                                                                                                                                                                Ab27
                                                                                                                                                                                                       Ab28
                                                                                                                                                                                                              Ab29
                                                                                                                                                                                                                     Ab30
                                                        Reference Lot 1                  Reference Lot 2                         Reference Lot 3                    Biosimilar




      Application 2
      Formulation development
                                                  Application of Conformational Array to Formulation Development
            2.5


             2
OD 450 nm




            1.5


              1


            0.5


              0
                  Ab1
                        Ab2
                              Ab3
                                    Ab4
                                          Ab5
                                                Ab6
                                                      Ab7
                                                            Ab8
                                                                  Ab9
                                                                        Ab10
                                                                               Ab11
                                                                                      Ab12
                                                                                             Ab13
                                                                                                    Ab14
                                                                                                            Ab15
                                                                                                                   Ab16
                                                                                                                          Ab17
                                                                                                                                 Ab18
                                                                                                                                        Ab19
                                                                                                                                               Ab20
                                                                                                                                                      Ab21
                                                                                                                                                             Ab22
                                                                                                                                                                    Ab23
                                                                                                                                                                           Ab24
                                                                                                                                                                                  Ab25
                                                                                                                                                                                         Ab26
                                                                                                                                                                                                Ab27
                                                                                                                                                                                                       Ab28
                                                                                                                                                                                                              Ab29
                                                                                                                                                                                                                     Ab30




                                                       Control           Pi Buffer, O ion                  Pi Buffer+400mM NaCL                       Histidine Buffer
About Array Bridge
Array Bridge provides products and services that                 and documentation. Further, we can help you with ELISA
address two important areas in the development of                method qualification or validation. The company also
biologics: biosimilar drug comparability analysis and            provides consultation for the development of an effective
impurity analysis.                                               impurity analysis strategy, enabling your program(s) to
                                                                 meet requirements from regulatory agencies such as FDA
During biosimilar development, biologics comparability           and EMA.
is critical to the successful development of the process
and product. From cell line selection to process develop-        Array Bridge provides value to our customers through
ment, from formulation development to change control,            high quality products and services, and we help you
comparability is closely related to the molecule’s safety        develop biologics including biosimilars successfully.
and efficacy. Array Bridge has developed ‘antibody arrays’
to measure biosimilar drug comparability at the molecular
level, providing a sensitive, systematic and robust mea-
surement of biosimilar conformational comparability.

This antibody array-based technology can be used at all
stages of biosimilar development, from cell line selection and
process development to clinical testing and product release.

For impurity analysis, Array Bridge provides ELISA kits and
reagents for Host Cell Protein quantitation and Western
Blot analysis. All the products are manufactured under
cGMP to ensure quality and consistency. In the near future,
Array Bridge will also provide Q-PCR-based residual DNA
quantitation kits for CHO and E. coli-derived biologics and
an ELISA kit for residual Protein A quantitation.

In addition to these products, Array Bridge also provides
services to the biotech industry. If you need to analyze your
samples for impurities (Host Cell Proteins, residual DNA or
Protein A) or for biosimilar conformational comparability,
Array Bridge has scientists with experience working under
cGMP and ICH guidelines to deliver regulatory-ready results
Services
Array Bridge provides services in several areas
	   1. Biosimilar conformational comparability analysis.

	   2.  HO and E. coli Host Cell Protein quantitation, method development, qualification
       C
       or validation.

	   3.Western Blot analysis of HCPs in CHO or E. coli-derived biologics using 1-D and 2-D
       
       gel electrophoresis and 1-D and 2-D Western Blot.

	   4.  evelopment of customer-based biosimilar conformational comparability analysis
       D
       ELISA and HCP ELISA.

	   5.  roviding consultation on the Host Cell Protein strategy for a specific project
       P
       or platform.




                                                                      Contact Information

                                                                      www.arraybridge.com
                                                                      Phone: 636-284-4212.
                                                                      Email: support@arraybridge.com
                                                                      4320 Forest Park Avenue. Ste. 303
                                                                      St. Louis, MO 63108


                                                                      ARB-1125

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Comparability at Molecular level

  • 1.
  • 2. YOUR PATH TO SUCCESS Antibody Arrays for Biosimilar Conformational Comparability Analysis
  • 3. 3-D Conformational comparability Analysis Process-related Impurity Analysis Array Bridge provides ELISA based analysis for Host Cell a homologous counterpart in the human body, these Proteins from CHO (Chinese Hamster Ovary ) and E. coli antibodies could interfere with the physiological function host. The development and production of the ELISA kits of the protein through cross-reactivity. Thirdly, HCPs are under cGMP to ensure uninterrupted product supply themselves could act as agonist or antagonist to interfere and consistent quality. Host Cell Proteins are proteins and with the human normal metabolism. Because of these their derivatives from the hosts used for biologics reasons, in biologics development, significant resource is development and production. Higher levels of HCP will allocated during process development to reduce HCP pose risks in several areas. levels in the biologics product. First, HCPs from CHO and E. coli could be recognized by the human immune system as no self molecules, eliciting an immune reaction. Depending on the level and composi- tion of the HCPs, the reaction could range from none and mild reaction to severe reactions. Secondly, some HCPs could induce the production of antibodies. If the HCP has
  • 4. Protein Conformational Arrays, a new approach for biologics three–dimensional structure comparability analysis Protein Conformational Array ELISA provides a The FDA guidance systematic, sensitive and robust comparability testing further stated that for biologics (therapeutic proteins) at molecular level. “The three dimensional An array of polyclonal antibodies was designed systemati- conformation of a cally covering the whole biologics sequence and the assay protein is an important is in an easy-to-use ELISA format, these Protein Confor- factor in its biological mational Array ELISAs (PCA ELISA) can provide valuable function. Protein information on the 3-D structure and heterogeneity of generally exhibit biologics, and can be used at many stages and aspects complex three-dimen- of biologics development including cell line selection, sional conformations process development, formulation development and (tertiary structure product release testing. and, in some cases, quaternary structure) due to their large size and the It is known that the clinical and biological properties of a rotational characteristics of protein alpha carbons. biologics are the results of their basic properties such as The resulting flexibility enables dynamic, but subtle, amino acid sequence and three-dimensional structure, as changes in protein conformation over time, some of which well as the production, purification, formulation and storage may be absolutely required for functional activity.” conditions. One of the major challenges in biologics develop- “... at the same time, a protein’s three-dimensional ment is protein immunogenicity, unwanted immunogenicity conformation can often be difficult to define precisely could lead to reduced or loss of drug efficacy, altered using current physiochemical analytical technology.” pharmacokinetics (PK), general immune and hypersensitivity reaction, and neutralization of the natural counterpart in Because of the close relation between protein conforma- the human body. Multiple studies have demonstrated that tion and its immunogenicity, several analytical techniques protein conformation stability is closely related to its and bioassays have been used to probe conformational immunogenicity. One recent study indicated that a protein comparability in biologics. For example, protein intrinsic has a threshold of conformational stability to prevent the fluorescence, analytical ultracentrifugation, gel filtration, immunogenicity of foreign proteins. Another strong indica- light scattering and bioassays have all been employed for tion that protein conformation is closely related to its protein conformational analysis. However these approach- immunogenicity is through the study of protein aggregation. es have their respective limitations, generally they lack Multiple studies showed that protein aggregation is a major the desired sensitivity, coverage and throughput to source of immunogenicity. provide the information about protein 3-D structure. In the case of monoclonal antibody biologics, Bioassays In the recently published document for biosimilar developed based on target-antibody recognition will development by the Food and Drug Administration detect some changes in the CDR (complementarity (Guidance for Industry, Quality Considerations in determining region) regions, but can’t measure changes Demonstrating Biosimilarity to a Reference Protein in the rest of the biologics molecule. Product, FDA, February 2012), FDA recommends “Extensive, robust comparative physicochemical and The Protein Conformational Array developed specifically functional studies should be performed to evaluate toward monoclonal antibody drugs could provide a whether the proposed biosimilar product and the sensitive, systematic and efficient way to measure protein reference product are highly similar. A meaningful conformational comparability. The protein conformational assessment as to whether the proposed biosimilar array antibodies are developed from the specific sequence product is highly similar to the reference product of each monoclonal antibody drug; about 30 different depends on, among other things, the capabilities of antibodies were developed to provide a systematic available state-of-the-art analytical assays to coverage of the molecule. Studies using marketed assess, for example, the molecular weight of the monoclonal antibody drugs indicated that these confor- protein, complexity of the protein (higher order mational arrays can provide detailed information about structure and post-translational modification), degree the molecule and detect changes that may not be detected of heterogeneity, functional properties, impurity by the aforementioned techniques including bioassays. profile, and the degradation profiles denoting stability.”
  • 5. Application — 1 Comparison between marketed monoclonal antibody drug and biosimilar candidate. Comparison of Three Lots of Innovator Molecule and a Biosimilar Candidate 2.5 2 OD 450 nm 1.5 1 0.5 0 Ab1 Ab2 Ab3 Ab4 Ab5 Ab6 Ab7 Ab8 Ab9 Ab10 Ab11 Ab12 Ab13 Ab14 Ab15 Ab16 Ab17 Ab18 Ab19 Ab20 Ab21 Ab22 Ab23 Ab24 Ab25 Ab26 Ab27 Ab28 Ab29 Ab30 Reference Lot 1 Reference Lot 2 Reference Lot 3 Biosimilar Application 2 Formulation development Application of Conformational Array to Formulation Development 2.5 2 OD 450 nm 1.5 1 0.5 0 Ab1 Ab2 Ab3 Ab4 Ab5 Ab6 Ab7 Ab8 Ab9 Ab10 Ab11 Ab12 Ab13 Ab14 Ab15 Ab16 Ab17 Ab18 Ab19 Ab20 Ab21 Ab22 Ab23 Ab24 Ab25 Ab26 Ab27 Ab28 Ab29 Ab30 Control Pi Buffer, O ion Pi Buffer+400mM NaCL Histidine Buffer
  • 6. About Array Bridge Array Bridge provides products and services that and documentation. Further, we can help you with ELISA address two important areas in the development of method qualification or validation. The company also biologics: biosimilar drug comparability analysis and provides consultation for the development of an effective impurity analysis. impurity analysis strategy, enabling your program(s) to meet requirements from regulatory agencies such as FDA During biosimilar development, biologics comparability and EMA. is critical to the successful development of the process and product. From cell line selection to process develop- Array Bridge provides value to our customers through ment, from formulation development to change control, high quality products and services, and we help you comparability is closely related to the molecule’s safety develop biologics including biosimilars successfully. and efficacy. Array Bridge has developed ‘antibody arrays’ to measure biosimilar drug comparability at the molecular level, providing a sensitive, systematic and robust mea- surement of biosimilar conformational comparability. This antibody array-based technology can be used at all stages of biosimilar development, from cell line selection and process development to clinical testing and product release. For impurity analysis, Array Bridge provides ELISA kits and reagents for Host Cell Protein quantitation and Western Blot analysis. All the products are manufactured under cGMP to ensure quality and consistency. In the near future, Array Bridge will also provide Q-PCR-based residual DNA quantitation kits for CHO and E. coli-derived biologics and an ELISA kit for residual Protein A quantitation. In addition to these products, Array Bridge also provides services to the biotech industry. If you need to analyze your samples for impurities (Host Cell Proteins, residual DNA or Protein A) or for biosimilar conformational comparability, Array Bridge has scientists with experience working under cGMP and ICH guidelines to deliver regulatory-ready results
  • 7. Services Array Bridge provides services in several areas 1. Biosimilar conformational comparability analysis. 2. HO and E. coli Host Cell Protein quantitation, method development, qualification C or validation. 3.Western Blot analysis of HCPs in CHO or E. coli-derived biologics using 1-D and 2-D gel electrophoresis and 1-D and 2-D Western Blot. 4. evelopment of customer-based biosimilar conformational comparability analysis D ELISA and HCP ELISA. 5. roviding consultation on the Host Cell Protein strategy for a specific project P or platform. Contact Information www.arraybridge.com Phone: 636-284-4212. Email: support@arraybridge.com 4320 Forest Park Avenue. Ste. 303 St. Louis, MO 63108 ARB-1125