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Thomas Garnett EOL Fellows  March 2010 The Biodiversity Heritage Library: Liberating the World’s Biodiversity Literature
BHL- Why? . ,[object Object],[object Object],[object Object],Levinus Vincent Elenchus tabularum, pinacothecarum,  1719
BHL – Why? ,[object Object],“ The taxonomic impediment is a term that describes the gaps of knowledge in our taxonomic system” - Darwin Declaration, 1998 Georges Louis Leclerc, comte de Buffon Histoire naturelle : générale et particulière (Oiseaux) , 1799-1808
 
BHL Members: US/UK ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BHL Members: BHL-Europe ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BHL Members: BHL-China ,[object Object],[object Object],[object Object],[object Object]
BHL is a Focused Program ,[object Object]
Agricultural meteorology Physical Anthropology Melioration Crops and climate Ethnology Socio-cultural Anthropology Prehistoric archaeology  Biochemistry Fluid dynamics Genetics Cytology Biophysics Plant lore Mineralogy Bioacoustics Bioelectronics Radioecology Biomagnetism Environmental Management Physical geography Toponymy Environmental Policy Biomechanics Geomorphology Geophysics Stratigraphy Geochemistry Sedimentation Geomicrobiology Microscopy Orogeny Petrology Taxidermy Wile animal trade Vivariums,  terrariums,  aquariums Zoos Agricultural ecology Bioclimatology Biogeomorphology Ecophysiology Restoration  ecology Forestry Plant Culture Medical botany / zoology Soil science Economic botany Geobiology Coral Islands, Reefs & Atolls Seismology Continental drift Plate tectonics Hydrology Oceanography Atlases & Gazeteers History of discoveries, Exploration & travel Bioluminescence Phenology Specimen catalogs Collection & preservation Natural History – Directories Scientific drawing & illustration History of Natural sciences Immunology Microbial ecology Virology Natural History – Terminology, Abbrv. Cyanobacteria Topical terms derived from LCSH Paleontology Natural History – Biographies Natural History – Dictionaries & Encyclopedias Animal biochemistry Animal culture Aquaculture Wildlife conservation
Core Literature Botany Plant conservation  Phytogeography  Plant anatomy  Plant physiology Plant ecology  Spermatophyta, Phanerogams  Cryptogams Biological diversity  Evolution Phylogenetic relationships Evolutionary genetics  Scientific voyages and expeditions Pre-Linnaean works  Linnaean works  Biodiversity conservation  Conservation biology  Ecosystem management  Endangered species & ecosystems  Extinction  Classification, Nomenclature  Biogeography  Zoology/Botany--Morphology  Zoology/Botany--Anatomy Zoology/Botany--Embryology  Zoology/Botany--Reproduction Zoology/Botany--Geographical distribution  Classification, systematics and taxonomy  Zoology Invertebrates Chordates  Vertebrates  Animal Behavior
Stats: Now Online ,[object Object],[object Object],Oldest book: Schöffer’s  Herbarius , 1484.
What is the plan? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
BHL Digital Preservation ,[object Object],[object Object],[object Object],[object Object]
BHL Relationship with Non-Profit Journal Publishers ,[object Object],[object Object],[object Object],[object Object],[object Object]
Scanning = human work
Scan & Store: Internet Archive Scanning on Scribes Storage in Petaboxes
 
Referrers: 1 Jan 08 – 31 Jan 10  Jan 1, 2008 – Jan 31, 2010
 
Name Finding via  TaxonFinder
Image from Scanner Converted to text OCR via OC OCR OCR Name finding via TaxonFinder Extract names Submit to NameBank SOAP response Name Finding in action with Taxonomic Intelligence…
OCR error rate  for names only Top OCR errors Of the 3,003 names, 1,056 were incorrectly transcribed by OCR. 1 Insert Space 8 n->v 2 Omit Space 9 l->i 3 e->c 10 r->i 4 u->I 11 u->ii 5 u->n 12 h->l 6 i->l 13 h->ii 7 c->e 14 e->o 35.16%
Considerations ,[object Object],[object Object],[object Object],[object Object],[object Object]
Name finding statistics ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
http://www.biodiversitylibrary.org/name/Physeter_catodon
 
 
 
 
PDF Generation Stats
Mandate for new development ,[object Object],[object Object],[object Object]
Development goals re: citations ,[object Object],[object Object],[object Object],[object Object]
http://www.citebank.org
http://citebank.org/search
http://citebank.org/node/47423
 
Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Services: OpenURL http://www.biodiversitylibrary.org/openurl? pid=title:3934&volume=14&issue=&spage=301&date=1879 http://www.tropicos.org/Name/1200408
Services: OpenURL Disambiguation ,[object Object],[object Object]
Services: OpenURL Results
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],EOL Interfaces
Thank You  Tom ,[object Object],[object Object],[object Object],[object Object],[object Object]

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Eol fellow-march2010

  • 1. Thomas Garnett EOL Fellows March 2010 The Biodiversity Heritage Library: Liberating the World’s Biodiversity Literature
  • 2.
  • 3.
  • 4.  
  • 5.
  • 6.
  • 7.
  • 8.
  • 9. Agricultural meteorology Physical Anthropology Melioration Crops and climate Ethnology Socio-cultural Anthropology Prehistoric archaeology Biochemistry Fluid dynamics Genetics Cytology Biophysics Plant lore Mineralogy Bioacoustics Bioelectronics Radioecology Biomagnetism Environmental Management Physical geography Toponymy Environmental Policy Biomechanics Geomorphology Geophysics Stratigraphy Geochemistry Sedimentation Geomicrobiology Microscopy Orogeny Petrology Taxidermy Wile animal trade Vivariums, terrariums, aquariums Zoos Agricultural ecology Bioclimatology Biogeomorphology Ecophysiology Restoration ecology Forestry Plant Culture Medical botany / zoology Soil science Economic botany Geobiology Coral Islands, Reefs & Atolls Seismology Continental drift Plate tectonics Hydrology Oceanography Atlases & Gazeteers History of discoveries, Exploration & travel Bioluminescence Phenology Specimen catalogs Collection & preservation Natural History – Directories Scientific drawing & illustration History of Natural sciences Immunology Microbial ecology Virology Natural History – Terminology, Abbrv. Cyanobacteria Topical terms derived from LCSH Paleontology Natural History – Biographies Natural History – Dictionaries & Encyclopedias Animal biochemistry Animal culture Aquaculture Wildlife conservation
  • 10. Core Literature Botany Plant conservation Phytogeography Plant anatomy Plant physiology Plant ecology Spermatophyta, Phanerogams Cryptogams Biological diversity Evolution Phylogenetic relationships Evolutionary genetics Scientific voyages and expeditions Pre-Linnaean works Linnaean works Biodiversity conservation Conservation biology Ecosystem management Endangered species & ecosystems Extinction Classification, Nomenclature Biogeography Zoology/Botany--Morphology Zoology/Botany--Anatomy Zoology/Botany--Embryology Zoology/Botany--Reproduction Zoology/Botany--Geographical distribution Classification, systematics and taxonomy Zoology Invertebrates Chordates Vertebrates Animal Behavior
  • 11.
  • 12.
  • 13.
  • 14.
  • 16. Scan & Store: Internet Archive Scanning on Scribes Storage in Petaboxes
  • 17.  
  • 18. Referrers: 1 Jan 08 – 31 Jan 10 Jan 1, 2008 – Jan 31, 2010
  • 19.  
  • 20. Name Finding via TaxonFinder
  • 21. Image from Scanner Converted to text OCR via OC OCR OCR Name finding via TaxonFinder Extract names Submit to NameBank SOAP response Name Finding in action with Taxonomic Intelligence…
  • 22. OCR error rate for names only Top OCR errors Of the 3,003 names, 1,056 were incorrectly transcribed by OCR. 1 Insert Space 8 n->v 2 Omit Space 9 l->i 3 e->c 10 r->i 4 u->I 11 u->ii 5 u->n 12 h->l 6 i->l 13 h->ii 7 c->e 14 e->o 35.16%
  • 23.
  • 24.
  • 26.  
  • 27.  
  • 28.  
  • 29.  
  • 31.
  • 32.
  • 36.  
  • 37.
  • 38. Services: OpenURL http://www.biodiversitylibrary.org/openurl? pid=title:3934&volume=14&issue=&spage=301&date=1879 http://www.tropicos.org/Name/1200408
  • 39.
  • 41.
  • 42.