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Profiles Research Networking Software (RNS) 
About Profiles RNS 
Part - 1 
Information Services 
UMMS 
www.umassmed.edu 
1Profiles (http://profiles.catalyst.harvard.edu) is an open source web-based 
application for research networking and scientific collaboration 
developed by Harvard Catalyst, Griffin M. Webber, MD, PhD at the 
Harvard Clinical and Translational Science Center (HCTSA).
Training Overview 
Part 1 
 Introduction – Profiles RNS Software 
 Software Requirements 
 Search Options and Profiles Home Page Review 
 Parts of a Researcher’s Profile 
 Visualization of Profiles Data 
Part 2 
 Maintaining and Editing a Researcher’s Profile 
 Managing Active Networks 
 UMMS Support Model
ABOUT PROFILES RNS
Profiles RNS Tool 
Profiles Research Networking Software (RNS): Phase I 
and Phase II 
 Phase I: Profiles implementation included only active 
UMASS Medical School and UMASS Memorial faculty 
and later voluntary faculty 
 Phase II: of Profiles will integrate faculty from UMASS 
Amherst, Boston, Dartmouth, and Lowell campus’ that 
are part of the CCTS to provide a seamless searchable 
view of a faculty member’s expertise and network
About Profiles RNS Tool 
 Speeds the process of finding researchers with specific areas of 
expertise for collaboration and professional networking 
 Imports and analyzes “white Pages directory” information, 
publications, and other data sources to create and maintain a 
complete searchable library of web-based CVs 
 Self-populates a database of publication history , research 
interests, and professional relationships for each investigator 
within the organization 
 Includes built-in network analysis and data visualization tools to 
allow administrators to generate research portfolios of their 
institution, discover connections between parts of their 
organization , and understand what factors collaboration
Passive and Active Networks 
 Passive networks are automatically created based on 
current or past co-authorship history, organizational 
relationships and geographic proximity. It extends these 
networks by discovering new connections, such as 
identifying “similar people” who share related keywords 
 Users can manually create active networks by identifying 
advisor, mentor and collaborator relationships with 
colleagues
Disambiguation Process 
 Once the data is loaded and processed the first time, disambiguation 
process is run 
 Disambiguation process provides automatic identification of PubMed 
publications 
 Conservative algorithms reduce chance of false positives. 
 Researchers can also add publications that the disambiguation 
process doesn’t add, and they can remove incorrect publications; 
they will not be added again 
 Each Publication gets a probability and the probability must be at 
least 98% for it to be added
Software Requirements 
October 29, 2014 Presentation Title 8
Software Requirements 
 UMMS Profiles Research Networking Software works best 
using any of the following Operating Systems / Browsers: 
– Windows / Internet Explorer 7, 8 
– Windows / Firefox 3+ 
– Macintosh / Firefox 3+ 
– Macintosh / Safari 3+ 
– If the user is using an older browser or a browser not listed above such 
as Chrome, they may experience some errors in functionality 
– System also requires “Adobe Flash Player” to see 
Network View
Profiles Home Page and 
Search Options
Profiles RNS Home Page
Find researchers with interest in a 
particular area by searching with 
keyword(s). Profiles uses MeSH 
keywords from PubMed. 
Medical Subject Headings (MeSH®) 
MeSH is the National Library of Medicine's controlled vocabulary 
thesaurus. It consists of sets of terms naming descriptors in a 
hierarchical structure that permits searching at various levels of 
specificity. 
Keywords most 
viewed today 
(updated hourly) 
Keywords most 
viewed this month 
(updated monthly) 
This Profiles 
menu appears on 
all pages. 
Additional menu 
options will 
appear after you 
click on Login to 
Profiles. There 
is no login screen 
if you are already 
logged in with 
your login 
credentials. 
Find researchers 
using demographic 
information
Search Options 
Keyword Search 
Demographic Criteria
Search Options
Search Results
Search Results 
October 29, 
2014 
16 Presentation Title
Search Results 
Clicking on Search Results takes you back 
to the Search Results 
Publications Matching Keywords 
Link to PubMed Abstract 
Click to see the 
Researcher’s Profile
PARTS OF A 
RESEARCHER’S PROFILE
Parts of a Researcher’s Profile
Parts of a Researcher’s Profile 
Co-Authors 
Similar People 
Same Department 
NOTE: All co-authors will not appear in this Passive 
Network, only those that are loaded into the 
UMMS Profiles Database.
Parts of a Researcher’s Profile
Parts of a Researcher’s Profile
VISUALIZATIONS 
DATA FROM PASSIVE NETWORKS
Keyword Cloud View: Keyword
Keyword Cloud View: Categories 
October 29, 
2014 
25 Presentation Title
Co-Authors: List View 
October 29, 
2014 
26 Presentation Title
Co-Authors: Network View 
NOTE: You must have Adobe Flash Player installed in order to see the Network View. 
Profiled Researcher
Co-Authors: Network View 
Mouse over the 
Profiled Researcher
Co-Authors: Network View 
Mouse over a co-author 
and that co-author’s 
network is highlighted. If 
you click on the co-author’s 
name, they 
move to the center of the 
radial graph.
Co-Authors: Map View 
Red markers (push 
pins) indicate the 
profiled researcher and 
his/her co-authors. You 
can mouse over each 
one to see who it 
represents. 
Blue lines connect all 
people who have 
published together.
Similar People: List View 
October 29, 
2014 
Presentation Title

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Profiles training 1 description

  • 1. Profiles Research Networking Software (RNS) About Profiles RNS Part - 1 Information Services UMMS www.umassmed.edu 1Profiles (http://profiles.catalyst.harvard.edu) is an open source web-based application for research networking and scientific collaboration developed by Harvard Catalyst, Griffin M. Webber, MD, PhD at the Harvard Clinical and Translational Science Center (HCTSA).
  • 2. Training Overview Part 1  Introduction – Profiles RNS Software  Software Requirements  Search Options and Profiles Home Page Review  Parts of a Researcher’s Profile  Visualization of Profiles Data Part 2  Maintaining and Editing a Researcher’s Profile  Managing Active Networks  UMMS Support Model
  • 4. Profiles RNS Tool Profiles Research Networking Software (RNS): Phase I and Phase II  Phase I: Profiles implementation included only active UMASS Medical School and UMASS Memorial faculty and later voluntary faculty  Phase II: of Profiles will integrate faculty from UMASS Amherst, Boston, Dartmouth, and Lowell campus’ that are part of the CCTS to provide a seamless searchable view of a faculty member’s expertise and network
  • 5. About Profiles RNS Tool  Speeds the process of finding researchers with specific areas of expertise for collaboration and professional networking  Imports and analyzes “white Pages directory” information, publications, and other data sources to create and maintain a complete searchable library of web-based CVs  Self-populates a database of publication history , research interests, and professional relationships for each investigator within the organization  Includes built-in network analysis and data visualization tools to allow administrators to generate research portfolios of their institution, discover connections between parts of their organization , and understand what factors collaboration
  • 6. Passive and Active Networks  Passive networks are automatically created based on current or past co-authorship history, organizational relationships and geographic proximity. It extends these networks by discovering new connections, such as identifying “similar people” who share related keywords  Users can manually create active networks by identifying advisor, mentor and collaborator relationships with colleagues
  • 7. Disambiguation Process  Once the data is loaded and processed the first time, disambiguation process is run  Disambiguation process provides automatic identification of PubMed publications  Conservative algorithms reduce chance of false positives.  Researchers can also add publications that the disambiguation process doesn’t add, and they can remove incorrect publications; they will not be added again  Each Publication gets a probability and the probability must be at least 98% for it to be added
  • 8. Software Requirements October 29, 2014 Presentation Title 8
  • 9. Software Requirements  UMMS Profiles Research Networking Software works best using any of the following Operating Systems / Browsers: – Windows / Internet Explorer 7, 8 – Windows / Firefox 3+ – Macintosh / Firefox 3+ – Macintosh / Safari 3+ – If the user is using an older browser or a browser not listed above such as Chrome, they may experience some errors in functionality – System also requires “Adobe Flash Player” to see Network View
  • 10. Profiles Home Page and Search Options
  • 12. Find researchers with interest in a particular area by searching with keyword(s). Profiles uses MeSH keywords from PubMed. Medical Subject Headings (MeSH®) MeSH is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. Keywords most viewed today (updated hourly) Keywords most viewed this month (updated monthly) This Profiles menu appears on all pages. Additional menu options will appear after you click on Login to Profiles. There is no login screen if you are already logged in with your login credentials. Find researchers using demographic information
  • 13. Search Options Keyword Search Demographic Criteria
  • 16. Search Results October 29, 2014 16 Presentation Title
  • 17. Search Results Clicking on Search Results takes you back to the Search Results Publications Matching Keywords Link to PubMed Abstract Click to see the Researcher’s Profile
  • 18. PARTS OF A RESEARCHER’S PROFILE
  • 19. Parts of a Researcher’s Profile
  • 20. Parts of a Researcher’s Profile Co-Authors Similar People Same Department NOTE: All co-authors will not appear in this Passive Network, only those that are loaded into the UMMS Profiles Database.
  • 21. Parts of a Researcher’s Profile
  • 22. Parts of a Researcher’s Profile
  • 23. VISUALIZATIONS DATA FROM PASSIVE NETWORKS
  • 25. Keyword Cloud View: Categories October 29, 2014 25 Presentation Title
  • 26. Co-Authors: List View October 29, 2014 26 Presentation Title
  • 27. Co-Authors: Network View NOTE: You must have Adobe Flash Player installed in order to see the Network View. Profiled Researcher
  • 28. Co-Authors: Network View Mouse over the Profiled Researcher
  • 29. Co-Authors: Network View Mouse over a co-author and that co-author’s network is highlighted. If you click on the co-author’s name, they move to the center of the radial graph.
  • 30. Co-Authors: Map View Red markers (push pins) indicate the profiled researcher and his/her co-authors. You can mouse over each one to see who it represents. Blue lines connect all people who have published together.
  • 31. Similar People: List View October 29, 2014 Presentation Title

Hinweis der Redaktion

  1. This is an example of the research results page performed with only Key Word “RNA, small interfering”.
  2. To get to this screen you would have clicked on “why” for one of the search results of the previous slides. The connection page answers the question - why does the researcher appear on the research results Page. It shows the publication matching the keyword, with the link to PubMed Abstract. You can click on the link and could be directed to the full article at PubMed. Clicking in on search results, the link takes you back to the search results page. If you are clicked on a “name” you would be taken to that particular researcher’s profile.