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Literature search
Dr. Anjali Upadhye
M.Sc.,M.B.A., Ph.D
Hon.Shri.Annasaheb Dange Ayurved Medical College, Ashta, Sangli
Objectives of the Session:
• Various sources for literature to search
• Literature search on internet
• Introduction to Pubmed
- Using tags and Boolean operators in literature search
- Using filters
- MeSH terms
Why ??
• To have basic information about the subject
• To know-what others have already found out..
• To identify – the gaps in the available knowledge
• To justify the reason for your research
• To study – Methodology, others have adopted…
• To compare your results with previous results
Why ??
Thinking,
more the references,
more are the chances of
accepting our work..
Literature search
• Hard formats
▫ Text books
▫ Print journals
▫ Index medicus
▫ Soft formats
▪ Internet
▪ Soft copies of books
Internate sources
• Google
• Other search engines
• Websites devoted to medical literature search
o www.pubmed.gov
o www.thecochranelibrary.com
Lets start our search
on google
• I want to search articles on prevalence of hepatitis B
About 38,30,000 results
9
Problem of plenty
Can we narrow the search?
10
Heart of medical literature search
www.pubmed.com
www.pubmed.gov
PUBMED
11
What is Pubmed?
• PubMed is a free search engine
• accessing primarily the MEDLINE database
• It is a database of all articles published in certain journals .
• The United States National Library of Medicine (NLM) at the
National Institutes of Health maintains this database.
12
14
drabhijit tambe24@gmail.com
15
16
17
hepatitis b
18
19
Problem of plenty
Can we narrow the search?
20
Using tags
We can specify the fields from which
pubmed should search..
21
Title
Authors
Journal
22
Using tags
• Ti - title
• Au – Author
• Tiab – Title or abstract
These tags are used in [square brackets].
23
Using tags
• Hepatitis b [ti] - “Hepatitis b” in title
• Hepatitis b [tiab] - “Hepatitis b” in title /Abstract
• Patil [Au] - “Patil” in author
• India [pl] - Articles published in India
• jalgaon [ad] - Articles by authors in jalgaon
24
Affiliation [AD] Investigator [IR] Pharmacological Action [PA]
Article Identifier [AID] ISBN [ISBN] Place of Publication
[PL]
All Fields [ALL] Issue [IP] PMID [PMID]
Author [AU] Journal [TA] Publisher [PUBN]
Author Identifier [AUID] Language [LA] Publication Date [DP]
Book [book] Last Author [LASTAU] Publication Type [PT]
Comment Corrections Location ID [LID] Secondary Source ID [SI]
Corporate Author [CN] MeSH Date [MHDA] Subset [SB]
Create Date [CRDT] MeSH Major Topic [MAJR] Supplementary Concept[NM]
Completion Date [DCOM] MeSH Subheadings [SH] Text Words [TW]
EC/RN Number [RN] MeSH Terms [MH] Title [TI]
Editor [ED] Modification Date [LR] Title/Abstract [TIAB]
Entrez Date [EDAT] NLM Unique ID [JID] Transliterated Title [TT]
Filter [FILTER] Other Term [OT] UID [PMID]
First Author Name [1AU] Owner Version
Full Author Name [FAU] Pagination [PG] Volume [VI]
Full Investigator Name [FIR] Personal Name as Subject [PS]
25
26
27
Combining multiple search terms:
Boolean Operators
• AND
• OR
• NOT
28
• Prevalence [ti] AND hepatitis b [ti]
• Prevalence [ti] OR hepatitis b [ti]
• Hepatitis b [ti] NOT Prevalence[ti]
29
30
31
32
• (Hepatitis b [ti] or hepatitis a [ti] ) AND
prevalence [ti] AND india[pl]
Articles with hepatitis B or hepatitis A in title
and
prevalence in title
and
published in India
33
Combining multiple Boolean operators
and tags
• Hepatitis b [ti] AND jalgaon [ad]
Articles with hepatitis B in title
and
affiliation as jalgaon
34
Combining multiple Boolean operators
and tags
• Hepatitis b [ti] NOT america [pl]
Articles with hepatitis B in title
and
not published in america
35
Combining multiple Boolean operators
and tags
Combining multiple Boolean operators
and tags
• Hepatitis b [ti] NOT India[pl]
Articles with hepatitis B in title
and
not published in India
36
Combining multiple Boolean operators
and tags
• Hepatitis b [ti] AND prevalence [ti] AND
india[pl]
Articles with hepatitis B in title
and
prevalence in title
and
published in India
37
Combining multiple Boolean operators
and tags
• jalgaon [ad] NOT india [pl]
Articles by authors in jalgaon
and
Not published in India
38
Combining multiple Boolean operators
and tags
• Patil [au] NOT india [pl]
Articles authored by Patil
and
Not published in India
39
Wild card characters
• I want articles on psychosis, psychological illness,
psychiatric problems in children.
• Use search term - psych*
40
Lets see the results using some of these Boolean
operators / tags
41
Hepatitis b [ti] AND prevalence [ti]
42
Hepatitis b [ti] AND prevalence [ti] AND india [pl]
43
Manage filters
44
45
46
47
48
49
50
MeSH
• Crux of Pubmed
• Medical Subjects Headings
51
52
53
54
55
56
57
58
59
60
61
62
Other websites
• www.thechochranelibrary.com
• Database of systematic reviews and meta-analysis
63
Summary
• Log on to www.pubmed.com
• Register yourself with NCBI.
• Search pubmed using sensible selection of search terms
• Use tags in square brackets.
• Use Boolean operators
• Use wildcard (*)
• Use sensible combinations of above
• Manage filters
• Find MeSH terms and use them
64
65

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Literature search DR. Anjali Upadhye.pdf

  • 1. Literature search Dr. Anjali Upadhye M.Sc.,M.B.A., Ph.D Hon.Shri.Annasaheb Dange Ayurved Medical College, Ashta, Sangli
  • 2. Objectives of the Session: • Various sources for literature to search • Literature search on internet • Introduction to Pubmed - Using tags and Boolean operators in literature search - Using filters - MeSH terms
  • 3. Why ?? • To have basic information about the subject • To know-what others have already found out.. • To identify – the gaps in the available knowledge • To justify the reason for your research • To study – Methodology, others have adopted… • To compare your results with previous results
  • 4. Why ?? Thinking, more the references, more are the chances of accepting our work..
  • 5. Literature search • Hard formats ▫ Text books ▫ Print journals ▫ Index medicus ▫ Soft formats ▪ Internet ▪ Soft copies of books
  • 6. Internate sources • Google • Other search engines • Websites devoted to medical literature search o www.pubmed.gov o www.thecochranelibrary.com
  • 7. Lets start our search on google • I want to search articles on prevalence of hepatitis B
  • 8.
  • 10. Problem of plenty Can we narrow the search? 10
  • 11. Heart of medical literature search www.pubmed.com www.pubmed.gov PUBMED 11
  • 12. What is Pubmed? • PubMed is a free search engine • accessing primarily the MEDLINE database • It is a database of all articles published in certain journals . • The United States National Library of Medicine (NLM) at the National Institutes of Health maintains this database. 12
  • 13.
  • 15. 15
  • 16. 16
  • 18. 18
  • 19. 19
  • 20. Problem of plenty Can we narrow the search? 20
  • 21. Using tags We can specify the fields from which pubmed should search.. 21
  • 23. Using tags • Ti - title • Au – Author • Tiab – Title or abstract These tags are used in [square brackets]. 23
  • 24. Using tags • Hepatitis b [ti] - “Hepatitis b” in title • Hepatitis b [tiab] - “Hepatitis b” in title /Abstract • Patil [Au] - “Patil” in author • India [pl] - Articles published in India • jalgaon [ad] - Articles by authors in jalgaon 24
  • 25. Affiliation [AD] Investigator [IR] Pharmacological Action [PA] Article Identifier [AID] ISBN [ISBN] Place of Publication [PL] All Fields [ALL] Issue [IP] PMID [PMID] Author [AU] Journal [TA] Publisher [PUBN] Author Identifier [AUID] Language [LA] Publication Date [DP] Book [book] Last Author [LASTAU] Publication Type [PT] Comment Corrections Location ID [LID] Secondary Source ID [SI] Corporate Author [CN] MeSH Date [MHDA] Subset [SB] Create Date [CRDT] MeSH Major Topic [MAJR] Supplementary Concept[NM] Completion Date [DCOM] MeSH Subheadings [SH] Text Words [TW] EC/RN Number [RN] MeSH Terms [MH] Title [TI] Editor [ED] Modification Date [LR] Title/Abstract [TIAB] Entrez Date [EDAT] NLM Unique ID [JID] Transliterated Title [TT] Filter [FILTER] Other Term [OT] UID [PMID] First Author Name [1AU] Owner Version Full Author Name [FAU] Pagination [PG] Volume [VI] Full Investigator Name [FIR] Personal Name as Subject [PS] 25
  • 26. 26
  • 27. 27
  • 28. Combining multiple search terms: Boolean Operators • AND • OR • NOT 28
  • 29. • Prevalence [ti] AND hepatitis b [ti] • Prevalence [ti] OR hepatitis b [ti] • Hepatitis b [ti] NOT Prevalence[ti] 29
  • 30. 30
  • 31. 31
  • 32. 32
  • 33. • (Hepatitis b [ti] or hepatitis a [ti] ) AND prevalence [ti] AND india[pl] Articles with hepatitis B or hepatitis A in title and prevalence in title and published in India 33 Combining multiple Boolean operators and tags
  • 34. • Hepatitis b [ti] AND jalgaon [ad] Articles with hepatitis B in title and affiliation as jalgaon 34 Combining multiple Boolean operators and tags
  • 35. • Hepatitis b [ti] NOT america [pl] Articles with hepatitis B in title and not published in america 35 Combining multiple Boolean operators and tags
  • 36. Combining multiple Boolean operators and tags • Hepatitis b [ti] NOT India[pl] Articles with hepatitis B in title and not published in India 36
  • 37. Combining multiple Boolean operators and tags • Hepatitis b [ti] AND prevalence [ti] AND india[pl] Articles with hepatitis B in title and prevalence in title and published in India 37
  • 38. Combining multiple Boolean operators and tags • jalgaon [ad] NOT india [pl] Articles by authors in jalgaon and Not published in India 38
  • 39. Combining multiple Boolean operators and tags • Patil [au] NOT india [pl] Articles authored by Patil and Not published in India 39
  • 40. Wild card characters • I want articles on psychosis, psychological illness, psychiatric problems in children. • Use search term - psych* 40
  • 41. Lets see the results using some of these Boolean operators / tags 41
  • 42. Hepatitis b [ti] AND prevalence [ti] 42
  • 43. Hepatitis b [ti] AND prevalence [ti] AND india [pl] 43
  • 45. 45
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  • 51. MeSH • Crux of Pubmed • Medical Subjects Headings 51
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  • 61. 61
  • 62. 62
  • 63. Other websites • www.thechochranelibrary.com • Database of systematic reviews and meta-analysis 63
  • 64. Summary • Log on to www.pubmed.com • Register yourself with NCBI. • Search pubmed using sensible selection of search terms • Use tags in square brackets. • Use Boolean operators • Use wildcard (*) • Use sensible combinations of above • Manage filters • Find MeSH terms and use them 64
  • 65. 65