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20150701 opendata bern_agosti_2
- 1. Donat Agosti Plazi http://plazi.org OpenData.ch/2015 1. Juli, Uni Bern Open Biodiversity Data: Auf der Suche nach den verlorenen Arten
- 8. Treatment
- 11. XML RDF
- 13. Die wissenschaftliche Herausforderung 1 tnntttccca cgaataaata atataagatt ttgattatta cctccttctt taattttatt 61 attatcaaga agattagttt ataaaggagt aggaacagga tgaactgttt atcctccttt 121 atctaataat ttatatcata atggattttc aactgattta gcaatttttt ctttacatat 181 tgcaggaata tcatcaatta taggagcaat taattttatt tcaacaattt taaatataca 241 tcataaaaat ttatcattag ataaaattcc attgttagtt tgatcaattt taattacagc 301 tattttatta ttattatctt tacctgtatt agcaggtgca attactatat tattaactga 361 tcgaaatcta aatacaactt tttttgatcc ttcgggtgga ggagatccaa ttttatatca 421 acatttattt
- 21. Die Plazi Vision: Giant Global Biodiversity Graph Legal Social Technical Ontologies Infrastructure 500 M pages 5*
- 22. What does this mean? The Linking Open Data cloud diagram Linked Open Data Cloud
- 23. Plazi Arbeitsablauf Plazi SRS find scan «OCR» markup store + access Schwerpunkt auf Zugang zu Biodiversitätsdaten.
- 24. Text <tax:treatment> <tax:nomenclature> <tax:name> <tax:xid source="HNS" identifier="193329"/> <tax:xmldata> <dc:Genus>Mystrium</dc:Genus> <dc:Species>leonie</dc:Species> </tax:xmldata> Mystrium leonie </tax:name> <tax:status>n. sp.</tax:status> Fig 1 D - F </tax:nomenclature> <tax:div type="description"> <tax:p>HOLOTYPE WORKER: TL 3.95, HL 1.02, HW 0.95, CI 1.30, SI 137, PW 0.73, ML 0.38. Mandible outer margi to a sharp apical tooth, the apex parallel to the an (Holotype with material in mandibles, so mandibles a $ described below from paratypes.) Median clypeus .... </treatment> Semantisch erweiterter Text (TaxonX) … alternatives: From human to machine readable text RDF
- 25. Treatment Verlinkung der Daten mit externen Referenzen 5* 2014 NCBI
- 26. Zugang zu wissenschaftlicher Literatur: DOI via Zenodo/CERN
- 27. Plazi Arbeitsablauf: wissenschaftliche Namen
- 28. Plazi Arbeitsablauf: Tabellen «Treatment» Wissenschaftliche Artname Verbreitungsnachweis Cataglyphis tartessica workers Variable mean ± SD Head length 11.23 ± 0.12 Head width 11.15 ± 0.12 Scape length 11.47 ± 0.12 Mesosoma length 11.94 ± 0.16 Femur length 12.03 ± 0.14 Cephalic index 0 93.60 ± 3.940 Scape index 128.10 ± 7.660
- 29. Plazi Arbeitsablauf: Auffinden und “parsing” von Bibliographischen Referenzen
- 30. Plazi Arbeitsablauf: Datamining für Beobachtungsdaten
- 31. Plazi Arbeitsablauf: “Treatment”: eine Kombination von Werkzeugen
- 32. Status quo • 50,000+ treatments life • RDF in Betaversion • GoldenGate Imagine (Text mining tool) in Betaversion • Provider für Daten für NCBI, GBIF, EOL, antweb • Biodiversity Literature Repository functional
- 33. Next steps • 1 Million treatments life • RDF Version 1 • GoldenGate Imagine (Text mining tool) Version 1 • Provider für Daten für NCBI, GBIF, EOL, antweb • Biodiversity Literature Repository mit 100,000 Bibliographischen Referenzen und digitalen Versionen
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- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- The Linking Open Data cloud diagram This web page is the home of the LOD cloud diagram. This image shows datasets that have been published in Linked Data format, by contributors to the Linking Open Data community project and other individuals and organisations. It is based on metadata collected and curated by contributors to the CKAN directory. Clicking the image will take you to an image map, where each dataset is a hyperlink to its homepage.
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- The Linking Open Data cloud diagram This web page is the home of the LOD cloud diagram. This image shows datasets that have been published in Linked Data format, by contributors to the Linking Open Data community project and other individuals and organisations. It is based on metadata collected and curated by contributors to the CKAN directory. Clicking the image will take you to an image map, where each dataset is a hyperlink to its homepage.
- Notes: Add in Plazi and the idea of the treatment server
- Who are we?
- Who are we?
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server
- Notes: Add in Plazi and the idea of the treatment server