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Pressure BioSciences, Inc.
 PBI Shredder Systems
           Gentle, Rapid, and Safe Disruption of Tissues and Organisms for
   the Extraction of DNA, RNA, Protein, Mitochondria, Lipid, and Small Molecules


The PCT Shredder or The SHREDDER SG3




        Discovery Starts with Sample Preparation™
  Barocycler®, PULSE®Tubes, The PCT Shredder™, The SHREDDER SG3™
            PCT Shredder PULSE Tubes™ and Shredder Tubes™
                 are trademarks of Pressure BioSciences, Inc.
PBI Shredder Systems are low shear mechanical devices for gentle, rapid, and safe
   disruption of tissues and organisms. Both The PCT Shredder and The SHREDDER SG3 can
   provide effective extraction of DNA, RNA, proteins, mitochondria, lipids and small molecules
   from tissues and organisms, when used with Shredder Tubes and various buffers.

   Both systems use a variety of Shredder Tubes to directly and rapidly grind solid samples
   providing easy handling and reducing sample contamination. And, although not required for
   all extractions, additional extraction efficiency can be achieved when this process is combined
   with pressure cycling technology (PCT).


 PBI SHREDDER SYSTEMS


                                          Features and Benefits of The PCT Shredder
                                              Portable
                                              Sturdy, Stainless Steel Construction
                                              Cordless
                                              Compact and Lightweight driver




          The PCT Shredder



Features and Benefits of The SHREDDER SG3
   Long Lasting Lithium Rechargeable Batteries
   Heavy Duty Robust Driver
   Three Position Lever for Setting Reproducible Force




                                                                        The SHREDDER SG3
SHREDDER TUBES
TUBES                        Features & Benefits of the
                             Shredder Tube:
                                A Variety of Single-Use Processing
                                  Containers
                                Standard Tubes for Ambient Pressure
                                  Processing
                                Specialized Tubes for Ultra-High Pressure
                                  Processing
                                Metal Inserts for the Toughest of Samples
                                Excellent for Collection, Storage,
                                  Transport & Processing
                                Closed Containers to Help Ensure Safety
                                  Throughout the Entire Sample Preparation
                                  Process




        Variations and Specifications of Shredder Tubes

     Tube Type       Color         Metal Disk        PCT Compatible


  PCT Shredder       White            No                  Yes
  PULSE Tubes
  FT500-S

  PCT Shredder       White            Yes                 Yes
  PULSE Tubes
  FT500-MS

  Shredder Tubes     Coral            No                   No
  FT500-PS

  Shredder Tubes     Coral            Yes                  No
  FT500-PMS
EXTRACTION OF DNA
              DNA from Spinach Shown on a Pulsed Field Gel




DNA Extraction from spinach using the PBI Shredder System Results in Much
Longer DNA than bead beating methods, while providing comparable yields.



  DNA Extraction from Apple Seeds


                                         Consistent high yields of DNA can be
                                         obtained from apple seeds using either
                                         PBI Shredder System.

                                         Shredder Tubes (FT500-PMS) or PCT
                                         Shredder PULSE Tubes (FT500-MS)
                                         with metal inserts give more consistent
                                         and higher recovery of DNA from hard
                                         samples, such as apple seeds.

                                         Agarose gel electrophoresis shows that
                                         PBI Shredder Systems yield higher
                                         molecular weight genomic DNA, while
                                         the bead beater causes significant
                                         shearing of DNA.
EXTRACTION OF RNA
                                                                         RNA from Rat Skeletal Muscle

                                                                                  RNA Yield
High quality RNA suitable for the
preparation of cDNA libraries can be
obtained with The PCT Shredder or                                      0.4




                                             ug RNA per mg sk muscle
The SHREDDER SG3.
                                                                       0.3
Shredder Tubes are compatible with a
wide variety of sample preparation kits                                                             Shredder
and reagents including commercially                                    0.2
                                                                                                    Dounce
available chaotropes for the extraction
of nucleic acids.                                                      0.1

                                                                        0




EXTRACTION OF PROTEIN
Protein from the Nematode C. elegans



                                    Extraction of protein from C. elegans using
                                    The PCT Shredder and ProteoSolve-CE Native or
                                    ProteoSolve-CE Stringent Kits from PBI results
                                    in greater yield of protein than extraction with
                                    mortar and pestle with liquid nitrogen (LNP).

                                    PBI’s ProteoSolve-CE Native Kit was developed
                                    for the efficient recovery of native proteins and
                                    protein complexes under minimally denaturing
                                    conditions in which native conformation and
                                    activity are preserved.
Although PBI Shredder Systems
   Protein from Rice Grains            are comparable in yield to mortar
                                       and pestle methods, they are far
                                       less labor intensive than manual
                                       techniques.

                                       With PBI Shredder Systems there
                                       is no need to transfer the ground
                                       material for further processing.

                                       Since Shredder Tubes are single-
                                       use disposables, cleaning between
                                       extractions is no longer necessary.




Protein from Rat Skeletal Muscle   Consistent high yields of protein can be
                                   obtained from muscle tissue using
                                   PBI Shredder Systems.

                                   Protein yield data demonstrate that
                                   Dounce homogenization is less
                                   consistent (large error bar), while the
                                   Shredder samples are grouped much
                                   more tightly (small error bar), indicating
                                   greater reproducibility.

                                   Note that better results may be
                                   obtained for some sample types
                                   using PCT Shredder PULSE Tubes
                                   (FT500-S) or Shredder Tubes (FT500-PS)
                                   without metal inserts. This may be due
                                   to the sticky nature of some samples,
                                   which can clog the smaller pores of the
                                   metal insert.
                                   .
Protein from Porcine Cartilage




Protein from porcine cartilage (~30 mg per sample) extracted in
PBI ProteoSolve-IEF Buffer.

Tissue disruption was performed with The SHREDDER SG3 in PCT
Shredder PULSE Tubes (FT500-MS) for 40 seconds at lever setting #2
or #3.

Comparison samples were disrupted using a commercially available
homogenizer for 1 minute.

The negative control was generated by soaking a piece of cartilage in
PBI ProteoSolve-IEF Buffer without mechanical disruption.
PROTEIN EXTRACTION WITHOUT LIQUID NITROGEN
        TUMOR PROTEIN: PBI SHREDDER VS. CRYOGENIC GRINDING




   The PBI Shredder System can effectively replace liquid nitrogen grinding
   in some applications

   Cryogenic grinding (mortar and pestle with liquid nitrogen) followed
   by extraction with PBI’s ProteoSolve-TD2 Kit and pressure cycling
   technology (PCT) yielded less protein than disruption by The PBI
   Shredder System followed by extraction with PBI’s ProteoSolve-TD2 Kit
   and PCT.

   ProteoSolve-TD2 Buffer in combination with PCT facilitates recovery of
   intact membrane proteins from solid tumors. ProteoSolve-TD2 Buffer
   contains no organic solvents and is directly compatible with most
   subsequent proteomic analyses (2-D gels, SDS PAGE, liquid
   chromatography, antibody assays, and mass spectrometry).

   ProteoSolve-TD2 Buffer also recovers soluble cytosolic proteins to
   provide a more complete representation of the cellular proteome than can
   be achieved by other methods.
SPECIAL AND ADVANCED PREPARATIONS
EXTRACTION OF MITOCHONDRIA

                       Yield                               Respiration




                        Mitochondria from Rat Skeletal Muscle




                                     PBI Shredder


                                     Glass Homogenizer




                                        Electron micrograph (4000X) of
                                        mitochondria prepared using a PBI
                                        Shredder and a PBI MITOCHONDRIA
                                        ISOLATION KIT: RAT MUSCLE




Yield and quality of mitochondria prepared from rat skeletal muscle with a PBI
Shredder System compared to a Teflon/glass homogenizer are similar, but with
far greater ease-of-use, lower cost and safety with the PBI system.

PBI offers specialized kits for the extraction of mitochondria from various tissues.

Mitochondria prepared from freshly harvested tissue using the PBI MITOCHONDRIA
ISOLATION KIT: RAT MUSCLE are intact, normal and functional, as assessed by
western blotting, electron microscopy, Ca2+ uptake and respiration assays.
PREPARING TICKS FOR DETECTION OF TICK-BORNE PATHOGENS
                                          Preparation of ticks for the
      PBI Shredder vs. Mortar and Pestle  detection of tick-borne
                                          pathogens is often done with
                                          a razor blade and mortar/pestle.
                                          This method is both hazardous
                                          and labor intensive.

                                                      Recovering the processed tick
                                                      from the mortar requires time
                                                      and patience.

                                                      PBI Shredder Systems eliminate
                                                      the labor and hazard of mortar
                                                      and pestle preparation.




          Placing Tick in        Tick in PCT Shredder PULSE   Tick in PCT Shredder PULSE
     PCT Shredder PULSE Tube           Tube (FT500-MS)              Tube (FT500-MS)
           (FT500-MS)                  Prior to Shredding             Post-Shredding



    Ticks are placed in a PCT Shredder PULSE Tube affixed with a metal insert.

    A Shredder Ram is added to the Tube to entrap the tick between the Ram and Metal
    Disk.

    Buffer is then added to the Screw Cap side and the Tube is closed.

    The Tube is then placed in either the The PCT Shredder or The SHREDDER SG3 for
    processing.
DETECTION OF THE CAUSITIVE AGENT OF LYME DISEASE (Borrelia burgdorferi)




 Photographic Insert: A classic presentation of a tick bite showing a
 characteristic “bulls eye” rash, termed Erythema migrans indicating
 the potential for Lyme disease.

 Plot: Real-time PCR detection of Borrelia burgdorferi, the causative agent
 of Lyme disease extracted from the tick that inflicted the bite in the photograph.

 Data indicate that this tick harbored B. burgdorferi equivalent to approximately
 830,000 infectious organisms.
SHREDDING TREE BARK

            Plum Tree Bark                        Pine Tree Bark




Better shredding of bark is obtained using PCT Shredder PULSE Tubes (FT500-
MS) or Shredder Tubes (FT500-PMS) with metal inserts.

PBI Shredder Systems are ideal for processing small samples of bark (<25mg).

The difference in the color of the extract between plum and pine bark is due to
tannin content, not the effectiveness of shredding.
ADVANTAGES OF THE PBI SHREDDER SYSTEMS

Simple, Easy-To-Use
Inexpensive Hardware and Disposable Sample Containers
Compatible with Routinely Used Lab Buffers and Other Reagents
Single-Use, Closed, Versatile Processing Container
  • Self-Contained
  • No Sample Transfer Required
  • Reduces the Likelihood of Cross Contamination
  • Reduces the Chance of Sample Exposure to the User
  • Reduces the Chance of User Exposure to Potentially Hazardous
     Samples
  • Excellent for Collection, Storage, Transport, and Processing
  • Offers Full “Chain-of-Custody” Tracking from Collection to Test
  • Available with Metal Inserts for Use with Hard Samples
     Such as Seeds
  • Reduces Sample-to-Sample Variability
Safe – No Exposed Sharp Surfaces
Portable – Excellent for Field Use
Potential for Increased Yields and Higher Quality Biomolecules
14 Norfolk Ave, South Easton, MA 02375
 TEL 508-230-1828  FAX 508-230-1829
    www.pressurebiosciences.com

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The PCT Shredder or The SHREDDER SG3

  • 1. Pressure BioSciences, Inc. PBI Shredder Systems Gentle, Rapid, and Safe Disruption of Tissues and Organisms for the Extraction of DNA, RNA, Protein, Mitochondria, Lipid, and Small Molecules The PCT Shredder or The SHREDDER SG3 Discovery Starts with Sample Preparation™ Barocycler®, PULSE®Tubes, The PCT Shredder™, The SHREDDER SG3™ PCT Shredder PULSE Tubes™ and Shredder Tubes™ are trademarks of Pressure BioSciences, Inc.
  • 2. PBI Shredder Systems are low shear mechanical devices for gentle, rapid, and safe disruption of tissues and organisms. Both The PCT Shredder and The SHREDDER SG3 can provide effective extraction of DNA, RNA, proteins, mitochondria, lipids and small molecules from tissues and organisms, when used with Shredder Tubes and various buffers. Both systems use a variety of Shredder Tubes to directly and rapidly grind solid samples providing easy handling and reducing sample contamination. And, although not required for all extractions, additional extraction efficiency can be achieved when this process is combined with pressure cycling technology (PCT). PBI SHREDDER SYSTEMS Features and Benefits of The PCT Shredder  Portable  Sturdy, Stainless Steel Construction  Cordless  Compact and Lightweight driver The PCT Shredder Features and Benefits of The SHREDDER SG3  Long Lasting Lithium Rechargeable Batteries  Heavy Duty Robust Driver  Three Position Lever for Setting Reproducible Force The SHREDDER SG3
  • 3. SHREDDER TUBES TUBES Features & Benefits of the Shredder Tube:  A Variety of Single-Use Processing Containers  Standard Tubes for Ambient Pressure Processing  Specialized Tubes for Ultra-High Pressure Processing  Metal Inserts for the Toughest of Samples  Excellent for Collection, Storage, Transport & Processing  Closed Containers to Help Ensure Safety Throughout the Entire Sample Preparation Process Variations and Specifications of Shredder Tubes Tube Type Color Metal Disk PCT Compatible PCT Shredder White No Yes PULSE Tubes FT500-S PCT Shredder White Yes Yes PULSE Tubes FT500-MS Shredder Tubes Coral No No FT500-PS Shredder Tubes Coral Yes No FT500-PMS
  • 4. EXTRACTION OF DNA DNA from Spinach Shown on a Pulsed Field Gel DNA Extraction from spinach using the PBI Shredder System Results in Much Longer DNA than bead beating methods, while providing comparable yields. DNA Extraction from Apple Seeds Consistent high yields of DNA can be obtained from apple seeds using either PBI Shredder System. Shredder Tubes (FT500-PMS) or PCT Shredder PULSE Tubes (FT500-MS) with metal inserts give more consistent and higher recovery of DNA from hard samples, such as apple seeds. Agarose gel electrophoresis shows that PBI Shredder Systems yield higher molecular weight genomic DNA, while the bead beater causes significant shearing of DNA.
  • 5. EXTRACTION OF RNA RNA from Rat Skeletal Muscle RNA Yield High quality RNA suitable for the preparation of cDNA libraries can be obtained with The PCT Shredder or 0.4 ug RNA per mg sk muscle The SHREDDER SG3. 0.3 Shredder Tubes are compatible with a wide variety of sample preparation kits Shredder and reagents including commercially 0.2 Dounce available chaotropes for the extraction of nucleic acids. 0.1 0 EXTRACTION OF PROTEIN Protein from the Nematode C. elegans Extraction of protein from C. elegans using The PCT Shredder and ProteoSolve-CE Native or ProteoSolve-CE Stringent Kits from PBI results in greater yield of protein than extraction with mortar and pestle with liquid nitrogen (LNP). PBI’s ProteoSolve-CE Native Kit was developed for the efficient recovery of native proteins and protein complexes under minimally denaturing conditions in which native conformation and activity are preserved.
  • 6. Although PBI Shredder Systems Protein from Rice Grains are comparable in yield to mortar and pestle methods, they are far less labor intensive than manual techniques. With PBI Shredder Systems there is no need to transfer the ground material for further processing. Since Shredder Tubes are single- use disposables, cleaning between extractions is no longer necessary. Protein from Rat Skeletal Muscle Consistent high yields of protein can be obtained from muscle tissue using PBI Shredder Systems. Protein yield data demonstrate that Dounce homogenization is less consistent (large error bar), while the Shredder samples are grouped much more tightly (small error bar), indicating greater reproducibility. Note that better results may be obtained for some sample types using PCT Shredder PULSE Tubes (FT500-S) or Shredder Tubes (FT500-PS) without metal inserts. This may be due to the sticky nature of some samples, which can clog the smaller pores of the metal insert. .
  • 7. Protein from Porcine Cartilage Protein from porcine cartilage (~30 mg per sample) extracted in PBI ProteoSolve-IEF Buffer. Tissue disruption was performed with The SHREDDER SG3 in PCT Shredder PULSE Tubes (FT500-MS) for 40 seconds at lever setting #2 or #3. Comparison samples were disrupted using a commercially available homogenizer for 1 minute. The negative control was generated by soaking a piece of cartilage in PBI ProteoSolve-IEF Buffer without mechanical disruption.
  • 8. PROTEIN EXTRACTION WITHOUT LIQUID NITROGEN TUMOR PROTEIN: PBI SHREDDER VS. CRYOGENIC GRINDING The PBI Shredder System can effectively replace liquid nitrogen grinding in some applications Cryogenic grinding (mortar and pestle with liquid nitrogen) followed by extraction with PBI’s ProteoSolve-TD2 Kit and pressure cycling technology (PCT) yielded less protein than disruption by The PBI Shredder System followed by extraction with PBI’s ProteoSolve-TD2 Kit and PCT. ProteoSolve-TD2 Buffer in combination with PCT facilitates recovery of intact membrane proteins from solid tumors. ProteoSolve-TD2 Buffer contains no organic solvents and is directly compatible with most subsequent proteomic analyses (2-D gels, SDS PAGE, liquid chromatography, antibody assays, and mass spectrometry). ProteoSolve-TD2 Buffer also recovers soluble cytosolic proteins to provide a more complete representation of the cellular proteome than can be achieved by other methods.
  • 9. SPECIAL AND ADVANCED PREPARATIONS EXTRACTION OF MITOCHONDRIA Yield Respiration Mitochondria from Rat Skeletal Muscle PBI Shredder Glass Homogenizer Electron micrograph (4000X) of mitochondria prepared using a PBI Shredder and a PBI MITOCHONDRIA ISOLATION KIT: RAT MUSCLE Yield and quality of mitochondria prepared from rat skeletal muscle with a PBI Shredder System compared to a Teflon/glass homogenizer are similar, but with far greater ease-of-use, lower cost and safety with the PBI system. PBI offers specialized kits for the extraction of mitochondria from various tissues. Mitochondria prepared from freshly harvested tissue using the PBI MITOCHONDRIA ISOLATION KIT: RAT MUSCLE are intact, normal and functional, as assessed by western blotting, electron microscopy, Ca2+ uptake and respiration assays.
  • 10. PREPARING TICKS FOR DETECTION OF TICK-BORNE PATHOGENS Preparation of ticks for the PBI Shredder vs. Mortar and Pestle detection of tick-borne pathogens is often done with a razor blade and mortar/pestle. This method is both hazardous and labor intensive. Recovering the processed tick from the mortar requires time and patience. PBI Shredder Systems eliminate the labor and hazard of mortar and pestle preparation. Placing Tick in Tick in PCT Shredder PULSE Tick in PCT Shredder PULSE PCT Shredder PULSE Tube Tube (FT500-MS) Tube (FT500-MS) (FT500-MS) Prior to Shredding Post-Shredding Ticks are placed in a PCT Shredder PULSE Tube affixed with a metal insert. A Shredder Ram is added to the Tube to entrap the tick between the Ram and Metal Disk. Buffer is then added to the Screw Cap side and the Tube is closed. The Tube is then placed in either the The PCT Shredder or The SHREDDER SG3 for processing.
  • 11. DETECTION OF THE CAUSITIVE AGENT OF LYME DISEASE (Borrelia burgdorferi) Photographic Insert: A classic presentation of a tick bite showing a characteristic “bulls eye” rash, termed Erythema migrans indicating the potential for Lyme disease. Plot: Real-time PCR detection of Borrelia burgdorferi, the causative agent of Lyme disease extracted from the tick that inflicted the bite in the photograph. Data indicate that this tick harbored B. burgdorferi equivalent to approximately 830,000 infectious organisms.
  • 12. SHREDDING TREE BARK Plum Tree Bark Pine Tree Bark Better shredding of bark is obtained using PCT Shredder PULSE Tubes (FT500- MS) or Shredder Tubes (FT500-PMS) with metal inserts. PBI Shredder Systems are ideal for processing small samples of bark (<25mg). The difference in the color of the extract between plum and pine bark is due to tannin content, not the effectiveness of shredding.
  • 13. ADVANTAGES OF THE PBI SHREDDER SYSTEMS Simple, Easy-To-Use Inexpensive Hardware and Disposable Sample Containers Compatible with Routinely Used Lab Buffers and Other Reagents Single-Use, Closed, Versatile Processing Container • Self-Contained • No Sample Transfer Required • Reduces the Likelihood of Cross Contamination • Reduces the Chance of Sample Exposure to the User • Reduces the Chance of User Exposure to Potentially Hazardous Samples • Excellent for Collection, Storage, Transport, and Processing • Offers Full “Chain-of-Custody” Tracking from Collection to Test • Available with Metal Inserts for Use with Hard Samples Such as Seeds • Reduces Sample-to-Sample Variability Safe – No Exposed Sharp Surfaces Portable – Excellent for Field Use Potential for Increased Yields and Higher Quality Biomolecules
  • 14. 14 Norfolk Ave, South Easton, MA 02375 TEL 508-230-1828  FAX 508-230-1829 www.pressurebiosciences.com