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ALMA  Alberta Livestock & Meat Agency Ltd.  Canadian Bovine Genomics Workshop September 14, 2009 Calgary, Alberta
Genomics in Beef Today – a vision of genomics from farm to fork   Ronan Loftus – IdentiGEN Canadian Bovine Genomics Workshop Calgary – Sept ‘09
Introduction to IdentiGEN ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Single device/operator per year Moore’s Law for genomics: DNA sequencing capacity doubling time ~15 months Source: Prof D MacHugh, UCD 1 bp 10 bp 100 bp 1 kilobase 10 kilobase 100 kilobase 1 megabase 10 megabase 100 megabase 1 gigabase 10 gigabase 1960 1970 1980 1990 2000 2010 100 gigabase 1000 gigabase
Modified from  The Economist  (April 16 th , 2009) DNA sequencing costs and the growth of DNA sequence data 1971 80 90 2000 08 $0.00001 $0.0001 $0.001 $0.01 $0.1 $1 $10 $100 $1,000 $10,000 Sequencing cost per base pair (bp) 10 2 10 3 10 4 10 5 10 6 10 7 10 8 10 9 10 10 10 11 Growth in GenBank DNA sequence data (bp)
Genomics: Potential Roles ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Genomics: Potential Roles
What is traceability? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Traceability – Why? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Traceability & Consumer confidence Hen House - US retailer McDonalds  - Ireland Tesco/Homeplus - Korea retailer Pedigree – UK Pet food
International Trade Europe – traceability mandatory Brazilian export ban due to lack  of traceability Batch No Japan – traceability mandatory Key focus of New Administration? Korea – traceability mandatory DNA Sampling for cattle  mandatory “ The announcement by South Korea reinforces the message that the U.S. industry needs to move forward with a traceability program if it is serious about remaining competitive in the international marketplace,”
Jan ’08 - U.S. Department of Agriculture announced the largest beef recall in its history  ~ 150 million Lbs Crisis Management Irish Dioxin Crisis (Dec ’08) Pork –  10 farms involved 3 months pork production recalled $250 million government support Beef –  50 farms involved Minimized recall Industry reputation & damage limited
The traceability challenge! Consumer Perception Domestic  Retail Foodservice Export
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],How can genomics help?
DNA Traceability concepts ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Individual Family Population Precision Price/ Head Test Complexity Higher Lower Higher Lower Lower Higher
Technology Requirements ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
DNA Traceability & the Consumer  ,[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Benefits of a DNA Approach
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Perspectives – Regional/ National Programs
www.identigen.com Thank You For further information please contact rloftus@identigen.com

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CBGW Identigen Ronan Loftus

  • 1. ALMA Alberta Livestock & Meat Agency Ltd. Canadian Bovine Genomics Workshop September 14, 2009 Calgary, Alberta
  • 2. Genomics in Beef Today – a vision of genomics from farm to fork Ronan Loftus – IdentiGEN Canadian Bovine Genomics Workshop Calgary – Sept ‘09
  • 3.
  • 4. Single device/operator per year Moore’s Law for genomics: DNA sequencing capacity doubling time ~15 months Source: Prof D MacHugh, UCD 1 bp 10 bp 100 bp 1 kilobase 10 kilobase 100 kilobase 1 megabase 10 megabase 100 megabase 1 gigabase 10 gigabase 1960 1970 1980 1990 2000 2010 100 gigabase 1000 gigabase
  • 5. Modified from The Economist (April 16 th , 2009) DNA sequencing costs and the growth of DNA sequence data 1971 80 90 2000 08 $0.00001 $0.0001 $0.001 $0.01 $0.1 $1 $10 $100 $1,000 $10,000 Sequencing cost per base pair (bp) 10 2 10 3 10 4 10 5 10 6 10 7 10 8 10 9 10 10 10 11 Growth in GenBank DNA sequence data (bp)
  • 6.
  • 8.
  • 9.
  • 10. Traceability & Consumer confidence Hen House - US retailer McDonalds - Ireland Tesco/Homeplus - Korea retailer Pedigree – UK Pet food
  • 11. International Trade Europe – traceability mandatory Brazilian export ban due to lack of traceability Batch No Japan – traceability mandatory Key focus of New Administration? Korea – traceability mandatory DNA Sampling for cattle mandatory “ The announcement by South Korea reinforces the message that the U.S. industry needs to move forward with a traceability program if it is serious about remaining competitive in the international marketplace,”
  • 12. Jan ’08 - U.S. Department of Agriculture announced the largest beef recall in its history ~ 150 million Lbs Crisis Management Irish Dioxin Crisis (Dec ’08) Pork – 10 farms involved 3 months pork production recalled $250 million government support Beef – 50 farms involved Minimized recall Industry reputation & damage limited
  • 13. The traceability challenge! Consumer Perception Domestic Retail Foodservice Export
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19.
  • 20. www.identigen.com Thank You For further information please contact rloftus@identigen.com

Hinweis der Redaktion

  1. Genomics is essentially an information science Technologies underpinning genomics follow Moore’s Law Doubling time is shorter than for computing