The University of Queensland

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I develop solutions to challenging problems with a focus on research science. I consider myself as a (Bio)DevOp. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. I am a system administrator of linux servers and OS X desktops. I automate my work using tools such as Ansible and Fabric. Specialties: Big data science. Work flow optimisation. Next generation sequencing. HPC. System administration. Mathematical optimisation. Python (NumPy, SciPy, MatplotLib, Fabric, Sphinx, Biopython). RethinkDB. Splunk. Ansible.

bioinformatics science software engineering good practice python programming devops biodevops

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Australian Bioinformatics Conference (ABiC) 2014 Talk - Doing bioinformatics better by Mitchell Jon Stanton-Cook of The University of Queensland

Vor 9 Jahren • 1699 Aufrufe

SWC-2015

Vor 8 Jahren • 387 Aufrufe

pip and virtualenv

amaneu • Vor 10 Jahren

I develop solutions to challenging problems with a focus on research science. I consider myself as a (Bio)DevOp. I am a core developer of computational pipelines and data management procedures for next generation sequencing data in the context of high performance computing (HPC) environments. I am a system administrator of linux servers and OS X desktops. I automate my work using tools such as Ansible and Fabric. Specialties: Big data science. Work flow optimisation. Next generation sequencing. HPC. System administration. Mathematical optimisation. Python (NumPy, SciPy, MatplotLib, Fabric, Sphinx, Biopython). RethinkDB. Splunk. Ansible.

bioinformatics science software engineering good practice python programming devops biodevops