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BioLiveCD
  2008.Apr.15
     Eric
Outline
• Motivation
• About Live CD
• Application Software
• Copyright
• Advantage
• Conclusion
                    2
Motivation
The paper about bioinformatic tools       Book for Bioinformatics Computer Skills




                My laziness




                                      3
About Live CD


                               Work without hard drive
A bootable disc                                            Run system on memory




       reboot for default setting                        LiveUSB is better
                                        4
• Like general operating system
                  install procedure.

                  • Including hardware driver. (for
                  general hardware device)

                  • Initialize the system, prepare
                  for command shell or GUI
                  interface for user.
A bootable disc


                  5
• Doesn’t have to install hard
                       drive.

                       • Create a temporary partition
                       on memory.

                       • Performance depend on
                       memory specification and size.
Run system on memory




                       6
• Better than optical drive.
           • Provide storage space.
           • Easy to carry, and it’s
           convenient to modify the
           current system content.

Live USB


           7
Application Software




               Bioinformatic Tools
 General

           8
General Apps


Terminal             IDE             Viewer




                           Browser
       Text editor
                     9
Bioinformatic Tools

    BioRuby        BioPython




              10
Copyright
• Property
• GPL
• LGPL
• BSD
• MIT
• Free for academic users, Unavailable
                     11
Property
All right reserved




        12
GPL
       GNU General Public License

• First open source software license
• Freedom of use
• Freedom of research
• Freedom of distribution
• Freedom of improvement
• Ex. BioPerl
                     13
LGPL
       Lesser General Public License



• Like GPL
• But LGPL for the “Library”
• Ex. BioRuby, Jmol

                    14
BSD
       Berkeley Software Distribution



• Release all rights.
• Use software free, including copy,
  distribute, edit, commercial use.
• Low law risk.

                      15
MIT
           Massachusetts Institute


• A.k.a. “X11 License”
• Release all rights, like BSD license.
• Allow developer change the license
  agreement content.
• Also suit for documentation files.

                      16
Academic User
• For research, non-commercial user

         Unavailable
• Developer wasn’t declare the license type.

                    17
Advantage

• Save time
• Help starter learning bioinformatic tools
• Promote our lab, research center

                     18
Conclusion

• The storage of raw data.
• Disc update time
• Compatible for machine
• License
• Product differentiation : Pro version for sell
                      19

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BioLiveCd

  • 2. Outline • Motivation • About Live CD • Application Software • Copyright • Advantage • Conclusion 2
  • 3. Motivation The paper about bioinformatic tools Book for Bioinformatics Computer Skills My laziness 3
  • 4. About Live CD Work without hard drive A bootable disc Run system on memory reboot for default setting LiveUSB is better 4
  • 5. • Like general operating system install procedure. • Including hardware driver. (for general hardware device) • Initialize the system, prepare for command shell or GUI interface for user. A bootable disc 5
  • 6. • Doesn’t have to install hard drive. • Create a temporary partition on memory. • Performance depend on memory specification and size. Run system on memory 6
  • 7. • Better than optical drive. • Provide storage space. • Easy to carry, and it’s convenient to modify the current system content. Live USB 7
  • 8. Application Software Bioinformatic Tools General 8
  • 9. General Apps Terminal IDE Viewer Browser Text editor 9
  • 10. Bioinformatic Tools BioRuby BioPython 10
  • 11. Copyright • Property • GPL • LGPL • BSD • MIT • Free for academic users, Unavailable 11
  • 13. GPL GNU General Public License • First open source software license • Freedom of use • Freedom of research • Freedom of distribution • Freedom of improvement • Ex. BioPerl 13
  • 14. LGPL Lesser General Public License • Like GPL • But LGPL for the “Library” • Ex. BioRuby, Jmol 14
  • 15. BSD Berkeley Software Distribution • Release all rights. • Use software free, including copy, distribute, edit, commercial use. • Low law risk. 15
  • 16. MIT Massachusetts Institute • A.k.a. “X11 License” • Release all rights, like BSD license. • Allow developer change the license agreement content. • Also suit for documentation files. 16
  • 17. Academic User • For research, non-commercial user Unavailable • Developer wasn’t declare the license type. 17
  • 18. Advantage • Save time • Help starter learning bioinformatic tools • Promote our lab, research center 18
  • 19. Conclusion • The storage of raw data. • Disc update time • Compatible for machine • License • Product differentiation : Pro version for sell 19

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