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2008 Jun Zhao Eswc

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Jun Zhao
TechnologieBildung
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Building a Semantic Web Image Repository for Biological Research Images Jun Zhao , Graham Klyne and David Shotton [email_address] Image Bioinformatics Research Group Department of Zoology University of Oxford, UK
FlyTED ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Images ,[object Object],[object Object]
Where we started from ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The goal ,[object Object],[object Object],[object Object]
EPrints 3.0 (http://eprints.org/software/) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],A Piglet Squid from Serpent Project
Our gene expression images Gene name Strain name >1 Expression location Slide name Creation date ………… .
Adaptation of EPrints ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
 
 
 
 
 
Issues ,[object Object],[object Object]
FlyTED on the Semantic Web ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Publish FlyTED on the Semantic Web Free-text metadata file OAI-PMH + Relational FlyTED Database N3 metadata Local Harvesting & Transformer script Jena RDF database Command-line Jena model loader Joseki SPARQL Endpoint JSON data HTTP-based Babel HTTP SPARQL jSpace Exhibit
FlyTED in Exhibit
 
Functionality Measurement Yes Yes Partial Yes Yes Yes Yes No Yes Partial No Yes Partial Yes Yes No No No
Performance Exhibit Exhibit jSpace jSpace
Summary ,[object Object],[object Object],[object Object],[object Object]
To take home ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Since then ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Screen shot of FlyWeb
Acknowledgement ,[object Object],[object Object],[object Object],[object Object],[object Object]
Thank you!

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2008 Jun Zhao Eswc

  • 1. Building a Semantic Web Image Repository for Biological Research Images Jun Zhao , Graham Klyne and David Shotton [email_address] Image Bioinformatics Research Group Department of Zoology University of Oxford, UK
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  • 7. Our gene expression images Gene name Strain name >1 Expression location Slide name Creation date ………… .
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  • 17. Publish FlyTED on the Semantic Web Free-text metadata file OAI-PMH + Relational FlyTED Database N3 metadata Local Harvesting & Transformer script Jena RDF database Command-line Jena model loader Joseki SPARQL Endpoint JSON data HTTP-based Babel HTTP SPARQL jSpace Exhibit
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  • 20. Functionality Measurement Yes Yes Partial Yes Yes Yes Yes No Yes Partial No Yes Partial Yes Yes No No No
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  • 25. Screen shot of FlyWeb
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