Strategies for Landing an Oracle DBA Job as a Fresher
Zoo Bank Talk Ms Ccourse09 Compressed Test
1. LINNAEUS – SHERBORN - ZOOBANK Ellinor Michel 1,2 , Richard Pyle 3 & Andrew Polaszek 2 1 Int’l Commission for Zoological Nomenclature 2 The Natural History Museum, London UK 3 The Bishop Museum, Honolulu, HI, USA
2. THE LINNAEAN ENTERPRISE (E.O. Wilson) ________ the task of identifying all of Earth’s biodiversity
3. “ Setting all the reservations and biases aside, the total number of living organisms that have received Latin binomial names is currently around 1.5 million or so. Amazingly, there is as yet no centralized computer index of these recorded species. It says a lot about intellectual fashions, and about our values, that we have a computerized catalogue entry, along with many details, for each of several million books in the Library of Congress but no such catalogue for the living species we share our world with. Such a catalogue, with appropriately coded information about the habitat, geographical distribution, and characteristic abundance of the species in question (no matter how rough or impressionistic), would cost orders of magnitude less money than sequencing the human genome; I do not believe such a project is orders of magnitude less important. Without such a factual catalogue, it is hard to unravel the patterns and processes that determine the biotic diversity of our planet.” Robert M. May, 1988, Science. “How many species are there on Earth?”
4. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
5. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
6. Carolus Linnaeus 1707-1778 The first attempt to develop a catalogue of the Earth’s species Laid the foundation for binomial nomenclature Provided intellectual structure for how we see the living world
7. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
8. Albrecht Günther 1830-1914 Founder and Editor Zoological Record A catalogue of all publications on zoology Integrating disparate scientific practice
9. A catalogue of all publications on zoology Integrating disparate zoological knowledge Continues as pivotal reference resource online today
10. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
11. Franz Eilhard von Schulze 1840-1921 Nomenclator Animalium 1926-1954 (1758-1940) Sheffield Airey Neave 1879-1961 Nomenclator Zoologicus 1939-2004 (1758-2004) Available as reference resource online today
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13. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
14. Charles Davies Sherborn 1861-1942 Index Animalium 1902 (1758-1800) 1922-1933 (1801-1850) 11 volumes, 9000 pages ‘ Father of Biodiversity Informatics’
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16. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
17. ‘ Major Habitats’ in the Ecosystems of Websites Encyclopedia of Life … .makes all key information about all life on Earth accessible to anyone, anywhere in the world.’ …… .a constantly evolving encyclopedia that lives on the internet, aggregating virtually all known data about every living species. Catalogue of Life … .a validated checklist of all the world's species (plants, animals, fungi and microbes). … from an array of global species databases covering each of the major groups of organisms. … .a "federation" of database organisations
18. COMPLETING THE LINNAEAN ENTERPRISE ________________________ Systema Naturae Zoological Record Nomenclator Zoologicus / Nomenclator Animalium Index Animalium Encyclopedia of Life / Catalogue of Life ZooBank
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21. F ormally proposed: Nature 437: 477 (22 September 2005) Co-authurs: Donat Agosti Miguel Alonso-Zarazaga George Beccaloni Per de Place Bjørn Philippe Bouchet Denis Brothers Neal Evenhuis Gathorne Cranbrook Charles Godfray Norm Johnson Frank Krell Diana Lipscomb Chris Lyal Georgina Mace Shunsuke Mawatari Scott Miller Sandro Minelli Solene Morris Peter Ng David Patterson Rich Pyle Nigel Robinson Lucie Rogo Janice Taverne Chris Thompson Jan van Tol Quentin Wheeler Ed Wilson
31. Nomenclature & Taxonomy A B C D E F G H I species ‘ A very good tree’ Nomenclature provides the available names for taxonomy genus Eus Taxonomist 3 Eus Aus Taxonomist 2 Eus Cus genera Taxonomist 1 Type species Taxonomist 4 Cus Cus Eus NOT
32. Nomenclature & Taxonomy Nomenclature Taxonomy Type specimen
33. Nomenclature & Taxonomy Available vs. Valid Names Nomenclaturally ‘legal’ -may or may not be in current use In current use indicating a recognized taxon, ‘taxonomically valid’ Nomenclature Taxonomy Type specimen
50. ZooBank: Scope of Registry Nomenclatural Acts - Acts establishing new species-, genus- and family-group names in Zoology - Lectotypifications/Neotypifications, Emendations, First reviser, etc. - Higher-rank names? Published misspellings? New combinations? Publications - As defined in Article 8 of the ICZN Code. Authors - As authors of registered publications - ZooBank content providers Type Specimens - Integral to nomenclature; cross-linked to Museums
51. ZooBank: Registry Identifiers Globally Unique Identifiers (GUIDs) - Names alone are not unique (i.e., homonymy) - Author names inconsistently formatted Linnaeus Linn é Linn. L. - Identifiers need to be permanent and unambiguous Life Science Identifiers (LSIDs) - Originally developed by IBM - Adopted and recommended by TDWG, GBIF, others - Non-centralized issuance, no cost to issue - Open-source software in development & available Cuvier and Valenciennes Cuvier & Valenciennes C. & V. C&V
52. Nomenclatural Act: Chromis abyssus urn:lsid:zoobank.org:act:8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Publication: Pyle et al. , 2008 urn:lsid:zoobank.org:pub:68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid:zoobank.org:author:8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid:zoobank.org:specimen:FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1
53. Nomenclatural Act: Chromis abyssus urn:lsid :zoobank.org:act:8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Parts of an LSID - URN and LSID identification Publication: Pyle et al. , 2008 urn:lsid :zoobank.org:pub:68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid :zoobank.org:author:8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid :zoobank.org:specimen:FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1
54. Nomenclatural Act: Chromis abyssus urn:lsid: zoobank.org :act:8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Publication: Pyle et al. , 2008 urn:lsid: zoobank.org :pub:68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid: zoobank.org :author:8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid: zoobank.org :specimen:FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1 Parts of an LSID - URN and LSID identification - Authority identification
55. Nomenclatural Act: Chromis abyssus urn:lsid:zoobank.org: act :8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Publication: Pyle et al. , 2008 urn:lsid:zoobank.org: pub :68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid:zoobank.org: author :8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid:zoobank.org: specimen :FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1 Parts of an LSID - URN and LSID identification - Authority identification - Namespace identification
56. Nomenclatural Act: Chromis abyssus urn:lsid:zoobank.org:act: 8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Publication: Pyle et al. , 2008 urn:lsid:zoobank.org:pub: 68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid:zoobank.org:author: 8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid:zoobank.org:specimen: FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1 Parts of an LSID - URN and LSID identification - Authority identification - Namespace identification - Object identification
57. Nomenclatural Act: Chromis abyssus urn:lsid:zoobank.org:act: 8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Why UUIDs? - ISO standard, widely adopted (Windows, Mac, Linux) - GUIDs unto themselves, generated locally - Not self-resolving, but can be “wrapped” within a resolution protocol (LSID, Handle, DOI, etc.) - INTENDED FOR COMPUTERS, NOT HUMANS! Publication: Pyle et al. , 2008 urn:lsid:zoobank.org:pub: 68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid:zoobank.org:author: 8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid:zoobank.org:specimen: FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1
58. Nomenclatural Act: Chromis abyssus urn:lsid:zoobank.org:act: 8BDC0735-FEA4-4298-83FA-D04F67C3FBEC ZooBank: Registry Identifiers Why UUIDs? “ ONE TRILLION UUIDs would have to be created EVERY NANOSECOND for TEN BILLION years to exhaust the number of UUIDs” Publication: Pyle et al. , 2008 urn:lsid:zoobank.org:pub: 68376390-7809-46FF-9EC4-1371B4AAD0FF Author: Richard L. Pyle urn:lsid:zoobank.org:author: 8C466CBE-3F7D-4DC9-8CBD-26DD3F57E212 Type Specimen: BPBM 40861 urn:lsid:zoobank.org:specimen: FDE70A5C-59C3-407B-B9A6-5A9A2DA14BD1
59. ZooBank: Content Launch - 1 January 2008, 00:00:00GMT - 250 th Anniversary of Systema Naturae 10 th Edition (per ICZN Code Art. 3) Retrospective Content - 4,819 Names established in Linnaeus, 1758. Prospective Content - 5 New species of Chromis ( Zootaxa ) - Johnson et al.; Deans & Kawada ( Zootaxa) - Fisher & Smith ( PLoS ONE ) - Assmann et al.; Aken'Ova et al.; Hinojosa-Díaz (ZooKeys)
solves a longstandding impediment to getting good taxonomic references, addresses a growing problem for science in the cyber-age, is proactive in bringing taxonomy to users
solves a longstandding impediment to getting good taxonomic references, addresses a growing problem for science in the cyber-age, is proactive in bringing taxonomy to users
solves a longstandding impediment to getting good taxonomic references, addresses a growing problem for science in the cyber-age, is proactive in bringing taxonomy to users
solves a longstandding impediment to getting good taxonomic references, addresses a growing problem for science in the cyber-age, is proactive in bringing taxonomy to users
An important human disease protist, listed on the Index to Organism Names (ION) (interfaced with ZooBank) with 7 different species names. No indication as to which are ‘good’names as in: valid, available,
type is the objective link between the name and taxonomic concept
