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New computing platforms  for data-intensive science Ian Foster Computation Institute Argonne National Lab & University of Chicago
Abstract ,[object Object]
 
Growth of Genbank (1982-2005) Broad Institute
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],1070 molecular bio databases  Nucleic Acids Research  Jan 2008 (96 in Jan 2001) Slide: Carole Goble
New problem solving methodologies <0 1700 1950 1990 “ Applied computer science is now playing the role that mathematics did from the 17th through the 20th centuries: providing an orderly, formal framework and exploratory apparatus for other sciences” – G. Djorgovski Empirical Data Theory Simulation
 
More data does not always mean more knowledge Folker Meyer, Genome Sequencing vs. Moore’s Law: Cyber Challenges for the Next Decade,  CTWatch , August 2006.
[object Object],Data is Infrastructure  Storage & computing Economics of scale Aggregation Data & software People & disciplines Algorithms Scalable, probabilistic Errors & ambiguity distributed noisy Cloud Grid
An incomplete list of process steps ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Data Artisanal Industrial Data Analyses Models Experiments Literature
SOA as an integrating framework? ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],“ Service-oriented science”,  Science , 2005 and
Grid technology
NAE Grand Challenges
The future of multi-site data integration: An example fMRI Are positive symptom schizophrenics associated with  more severe superior temporal gyrus dysfunction? Receptor  Density ERP Web PubMed, Expasy,  Brain Map, Etc. Structure Clinical Portal
caBIG: sharing of infrastructure, applications, and data.  Aggregation in cancer biology Globus
As of  Feb 16 , 2009 123 participants 104   services 65  data 39  analytical
Microarray clustering  in caBIG ,[object Object],[object Object],[object Object],Workflow in/output caGrid services “ Shim” services others Wei Tan (Taverna workflow)
Children’s Oncology Group clinical imaging irials (Erberich)
Wide-area medical interface service ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Enterprise/Grid Interface Service DICOM Protocols Grid Protocols (Web services) DICOM XDS HL7 Vendor Specific Wide Area  Service Actor  Plug-in Adapters
Earth System Grid www.earthsystemgrid.org Main ESG Portal CMIP3 (IPCC AR4) ESG Portal ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],8,000 registered users 1,900 registered projects ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],400 scientific papers published to date based on analysis of CMIP3 (IPCC AR4) data ESG usage: over 500 sites worldwide ESG monthly download volumes Globus
Understanding interactions between human and natural systems IPCC  Emissions scenarios Numerical Simulations IPCC  4 th  Assessment 2007 IPCC process: Bill Collins, LBNL Mitigation Adaptation
A  C ommunity  I ntegrated  M odel for  E conomic  a nd  R esource  T rajectories for  H umankind ( CIM-EARTH ) Dynamics, foresight, uncertainty, resolution, 
 Agriculture, transport, taxation, 
 Data  (global, local, 
) (Super) computers CIM-EARTH Framework  Community process Open code, data www.cim-earth.org
Alleviating  Poverty in Thailand: Modeling  Entrepreneurship Consider  only wealth, access to  capital Consider also distance to 6 major cities Rob Townsend, Tibi Stef-Praun, Victor Zhorin Match High Low
[object Object],Data is Infrastructure  Storage & computing Economics of scale Aggregation Data & software People & disciplines Algorithms Scalable, probabilistic Errors & ambiguity distributed noisy Cloud Grid
Thank you! Computation Institute www.ci.uchicago.edu

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Aaas Data Intensive Science And Grid

  • 1. New computing platforms for data-intensive science Ian Foster Computation Institute Argonne National Lab & University of Chicago
  • 2.
  • 4. Growth of Genbank (1982-2005) Broad Institute
  • 5.
  • 6. New problem solving methodologies <0 1700 1950 1990 “ Applied computer science is now playing the role that mathematics did from the 17th through the 20th centuries: providing an orderly, formal framework and exploratory apparatus for other sciences” – G. Djorgovski Empirical Data Theory Simulation
  • 8. More data does not always mean more knowledge Folker Meyer, Genome Sequencing vs. Moore’s Law: Cyber Challenges for the Next Decade, CTWatch , August 2006.
  • 9.
  • 10.
  • 11.
  • 14. The future of multi-site data integration: An example fMRI Are positive symptom schizophrenics associated with more severe superior temporal gyrus dysfunction? Receptor Density ERP Web PubMed, Expasy, Brain Map, Etc. Structure Clinical Portal
  • 15. caBIG: sharing of infrastructure, applications, and data. Aggregation in cancer biology Globus
  • 16. As of Feb 16 , 2009 123 participants 104 services 65 data 39 analytical
  • 17.
  • 18. Children’s Oncology Group clinical imaging irials (Erberich)
  • 19.
  • 20.
  • 21. Understanding interactions between human and natural systems IPCC Emissions scenarios Numerical Simulations IPCC 4 th Assessment 2007 IPCC process: Bill Collins, LBNL Mitigation Adaptation
  • 22. A C ommunity I ntegrated M odel for E conomic a nd R esource T rajectories for H umankind ( CIM-EARTH ) Dynamics, foresight, uncertainty, resolution, 
 Agriculture, transport, taxation, 
 Data (global, local, 
) (Super) computers CIM-EARTH Framework Community process Open code, data www.cim-earth.org
  • 23. Alleviating Poverty in Thailand: Modeling Entrepreneurship Consider only wealth, access to capital Consider also distance to 6 major cities Rob Townsend, Tibi Stef-Praun, Victor Zhorin Match High Low
  • 24.
  • 25. Thank you! Computation Institute www.ci.uchicago.edu