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BACTERIOLOGI


5/03/2012       Masdiana Padaga   1
Bacteria on Earth




   Bacteria are in every environment imaginable!

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Size




     5/03/2012
Fig. 2-5 Six Comparisons Among Various Living Things and Molecules 3
                             Masdiana Padaga
Rod-Shaped Bacteria
Spherical Bacteria
Spirochete:
Borrelia burgdorferi
                       Spiral-Shaped Bacteria
Bacterial Morphology




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Bacterial Anatomy (Overview)




5/03/2012
Masdiana Padaga
8
Prokaryotic Cells
                           • Means “before a nucleus”
                        • Domains Bacteria and Archaea
                     • Can live in environmental extremes
                       • Live off diverse energy sources




                            5/03/2012                 Masdiana Padaga                                                9
http://micro.magnet.fsu.edu/cells/bacteriacell.html                     http://www.daviddarling.info/encyclopedia/P/prokaryoticcell.h
Prokaryotic
                Structures
• Cytoplasm
  – A liquid material that
    particles are suspended in
• Ribosomes
  – Site of protein synthesis
  – Located in cytoplasm
• Nucleoid
  – Contains hereditary
    material (DNA) of the
    cell
  – Located in cytoplasm
       5/03/2012            Masdiana Padaga   10
Prokaryotic
•
              Structures
    Plasma membrane
    – Encloses the cell
    – Regulates material into
      and out of cell
• Cell Wall
    – Supports cell and
      determines its shape
• Capsule
    –   Slime layer
    –   Protects
    –   Helps to not dry out
    –   Helps attach to other
        cells
          5/03/2012             Masdiana Padaga   11
Prokaryotic
              Structures
• Flagella
   – Used to swim/move
   – Spins like a propeller
     or whip like
• Pilli
   – Hair or threadlike
     structures
   – Help stick to other
     cells for mating or
     animal cells for food
     and protection



     5/03/2012                Masdiana Padaga   12
Cytoplasm
• Composed largely of water, together with proteins, nucleic
  acid, lipids and small amount of sugars and salts
• R ib os om e s : numerous, 15-20nm in diameter with 70S;
  distributed throughout the cytoplasm; sensitive to
  streptomycin and erythromycin site of protein synthesis

    P las m id s : extrachromosomal
     genetic elements
    Inclu s ions : sources of stored
     energy, e,g volutin
Plasmid       Plasmids
              are
              small , circular/line , extrachromosomal , do
              uble-stranded DNA molecules 。
              capable of self-replication and contain genes
              that confer some properties such as antibiotic
              resistance , virulence.
                Inclusions              Inclusions of
                 are aggregates of
                 various compounds
                                          Bacteria
                 that are normally
g ra nulo s      involved in storing
                 energy reserves or
     e           building blocks for
                 the cell.
                accumilate when a
                 cell is grown in the
                 presence of excess
                 nutrients
Cell
    membrane
•   Site of biosynthesis of DNA, cell wall polymers and
    membrane lipids. Selective permeability and transport of
    solutes into cells
•   Electron transport and oxidative phosphorylation
•   Excretion of hydrolytic exoenzymes
Nucleus


          • Lacking nuclear
            membrane, absence
            of nucleoli, hence
            known as nucleic
            material or nucleoid,
            one to several per
            bacterium.
Prokaryotic Cell Structure
               Glycocalyx - term to describe
                substances that surround bacterial
                cells
               1. Capsule
                   if substance is organized and firmly
                    attached to cell wall
               2. Slime Layer
                   if substance is unorganized and loosely
                    attached to cell wall

5/03/2012                     Masdiana Padaga              17
Capsules and slime layers                             Attachment
                                                      Protection from phagocytic
                                                       engulfment.
                                                      Resistance to drying.
                                                      Depot for waste products.
                                                      Reservoir for certain
                                                       nutrients.
                                                      protection




   These are structures surrounding the outside of the cell envelope. They
    usually consist of polysaccharide; however, in certain bacilli they are
    composed of a polypeptide (polyglutamic acid). Capsules are often lost
    during in vitro culture.
    5/03/2012                   Masdiana Padaga                            18
Flagella:




   Polar monotrichous      Polar amphitrichous
                           Spirillium              Lophotrichous
   Pseudomonas
                                                   Spirillum




  Peritrichous
  Salmonella

                          SEM of peritrichous strain Proteous


Note: bacteria without flagella are called atrichous.
         5/03/2012                   Masdiana Padaga               19
In Gram-negative Bacteria




5/03/2012   Masdiana Padaga           20
In Gram-positive Bacteria




5/03/2012              Masdiana Padaga   21
Motility
• Flagella consist of a       • Almost all Spiral bacteria are
  number of proteins            motile
                              • About 1/2 of Bacilli are
  including flagellin           motile
 Identification of           • Almost all Cocci are non-
                                motile
  Bacteria
                              • Bacteria move toward
 Pathogenesis                  attractive stimuli and away
                                from harmful substances
 Motility of bacteria
                                and waste products in the
                                process known as chemotaxis
                                .




      5/03/2012           Masdiana Padaga                  22
5/03/2012   Masdiana Padaga   23
Pilli or fimbrae
            • Filamentous appendages that are
              shorter, straighter and more numerous
              that flagella
            • Conjugation pilli found in certain group
              of bacteria.
            • Used for genetic material transfer.
            • The transfer process is called
              conjugation.
            • Antibiotic resistance transfer.
            • Atatchment pilli, Help bacteria adhare
              to the surfaces, such as cell surfaces
              and interface of water and air.
            • It helps in colonization and
              pathogenicity.
            • found mostly in Gram (-) Bacteria

5/03/2012         Masdiana Padaga                  24
E. coli (pathogenic)
5/03/2012               Masdiana Padaga   25
Cell Wall
• Main structural component -
  Peptidoglycan

• Peptidoglycan
  – repeating dissacharide units
  – polypeptides



   5/03/2012        Masdiana Padaga   26
Gram-Positive
                                                               Gram- Negative
                             Peptidoglycan

                                                                 Peptidoglycan
                            Cell Membrane                          Membrane
                                             Outer Membrane    Periplasm
Peptidoglycan




Cytoplasmic                                    Peptidoglycan
 membrane
                                              Periplasmic
                                               space

Another
cell




                5/03/2012                    Masdiana Padaga                     27
Bacterial Cell Walls




                       5/03/2012   Masdiana Padaga   28
Gram (+) Cell Wall
•   NAM      N-acetylmuramic acid
•   NAG       N- acetylglucosamine
•   tetrapeptide side chains
•   pentaglycine crossbridges
•   teichoic acid



     5/03/2012     Masdiana Padaga   29
Gram (-) Cell Wall
•   NAM
•   NAG
•   Tetrapeptide side chains
•   pentaglycine
•   2nd Outer membrane
     – Lipopolysaccharides (LPS)
          • Lipid A
          • O Antigen
    5/03/2012           Masdiana Padaga   30
Functions of Cell Wall
• Maintaining the cell's characteristic shape- the rigid
  wall compensates for the flexibility of the
  phospholipid membrane and keeps the cell from
  assuming a spherical shape
• Countering the effects of osmotic pressure
• Providing attachment sites for bacteriophages
• Providing a rigid platform for surface appendages-
  flagella, fimbriae, and pili all emanate from the wall
  and extend beyond it
• Play an essential role in cell division
• Be the sites of major antigenic determinants of the
  cell surface 。
• Resistance of Antibiotics

     5/03/2012           Masdiana Padaga              31
Cell Membrane (Plasma
               Membrane)
• 2 structural component
  – double layer of phospholipids
  – proteins


• Fluid Mosaic Model



   5/03/2012        Masdiana Padaga   32
cytoplasmic membrane




5/03/2012         Masdiana Padaga   33
5/03/2012   Masdiana Padaga   34
Functions of Cell
             Membrane
• 1. Selective barrier (selectively
  permeable)
• 2. Secretes exoenzymes
  –   amylases
  –   lipases
  –   peptidases
  –   CAN NOT UNDERGO PHAGOCYTOSIS

      5/03/2012    Masdiana Padaga    35
Functions of Cell
          Membrane
• 3. E.T.S. is located here
• 4. Enzymes for cell wall synthesis
• 5. If photosynthesis, enzymes are
  located on membranous structures
  called thylakoids
• 6. Mesosomes - invagination of cell
  membrane attached to DNA (Binary
 Fission)?
   5/03/2012      Masdiana Padaga       36
Endospores                            Identification of
                                           Bacteria
     (spores)                             Pathogenesis
                                          Resistance




•   Dormant cell
•   Resistant to adverse
    conditions             • Produced when starved
    - high temperatures    • Contain calcium dipicolinate
    - organic solvents         DPA, Dipicolinic acid
          5/03/2012
                           •Masdiana Padaga and Clostridium37
                                Bacillus
Method
Microscope
• Light Microscope
• Electron Microscope
• Darkfield Microscope
• Phase Contrast
  Microscope
• Fluorescence Microscope
• Confocal Microscope )
                        Staining Methods
                         Simple staining;
                         Differential    staining    (Gram
                          stain, Acid-fast stain),
                         Special staining( Negative stain,
       5/03/2012          Spore stain, Flagella stain) 38
                         Masdiana Padaga
5/03/2012   Masdiana Padaga   39
Gram Stain
• 1884 Hans Christian Gram
• most important stain used in
  Bacteriology

• Divides all Bacteria into 2 groups:
  – Gram (+)
  – Gram (-)


   5/03/2012        Masdiana Padaga     40
Gram Staining




5/03/2012        Masdiana Padaga   41
Results
• Gram (+) Purple
• Gram (-) Red
• Difference - due to
  structure of cell wall
    – Gram (+) Thick cell wall
    – Gram (-) Thin cell wall




 5/03/2012                Masdiana Padaga   42

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Bacteriology week3-4

  • 1. BACTERIOLOGI 5/03/2012 Masdiana Padaga 1
  • 2. Bacteria on Earth Bacteria are in every environment imaginable! 5/03/2012 Masdiana Padaga 2
  • 3. Size 5/03/2012 Fig. 2-5 Six Comparisons Among Various Living Things and Molecules 3 Masdiana Padaga
  • 6. Spirochete: Borrelia burgdorferi Spiral-Shaped Bacteria
  • 7. Bacterial Morphology 5/03/2012 Masdiana Padaga 7
  • 9. Prokaryotic Cells • Means “before a nucleus” • Domains Bacteria and Archaea • Can live in environmental extremes • Live off diverse energy sources 5/03/2012 Masdiana Padaga 9 http://micro.magnet.fsu.edu/cells/bacteriacell.html http://www.daviddarling.info/encyclopedia/P/prokaryoticcell.h
  • 10. Prokaryotic Structures • Cytoplasm – A liquid material that particles are suspended in • Ribosomes – Site of protein synthesis – Located in cytoplasm • Nucleoid – Contains hereditary material (DNA) of the cell – Located in cytoplasm 5/03/2012 Masdiana Padaga 10
  • 11. Prokaryotic • Structures Plasma membrane – Encloses the cell – Regulates material into and out of cell • Cell Wall – Supports cell and determines its shape • Capsule – Slime layer – Protects – Helps to not dry out – Helps attach to other cells 5/03/2012 Masdiana Padaga 11
  • 12. Prokaryotic Structures • Flagella – Used to swim/move – Spins like a propeller or whip like • Pilli – Hair or threadlike structures – Help stick to other cells for mating or animal cells for food and protection 5/03/2012 Masdiana Padaga 12
  • 13. Cytoplasm • Composed largely of water, together with proteins, nucleic acid, lipids and small amount of sugars and salts • R ib os om e s : numerous, 15-20nm in diameter with 70S; distributed throughout the cytoplasm; sensitive to streptomycin and erythromycin site of protein synthesis  P las m id s : extrachromosomal genetic elements  Inclu s ions : sources of stored energy, e,g volutin
  • 14. Plasmid Plasmids are small , circular/line , extrachromosomal , do uble-stranded DNA molecules 。 capable of self-replication and contain genes that confer some properties such as antibiotic resistance , virulence. Inclusions Inclusions of  are aggregates of various compounds Bacteria that are normally g ra nulo s involved in storing energy reserves or e building blocks for the cell.  accumilate when a cell is grown in the presence of excess nutrients
  • 15. Cell membrane • Site of biosynthesis of DNA, cell wall polymers and membrane lipids. Selective permeability and transport of solutes into cells • Electron transport and oxidative phosphorylation • Excretion of hydrolytic exoenzymes
  • 16. Nucleus • Lacking nuclear membrane, absence of nucleoli, hence known as nucleic material or nucleoid, one to several per bacterium.
  • 17. Prokaryotic Cell Structure  Glycocalyx - term to describe substances that surround bacterial cells  1. Capsule  if substance is organized and firmly attached to cell wall  2. Slime Layer  if substance is unorganized and loosely attached to cell wall 5/03/2012 Masdiana Padaga 17
  • 18. Capsules and slime layers  Attachment  Protection from phagocytic engulfment.  Resistance to drying.  Depot for waste products.  Reservoir for certain nutrients.  protection  These are structures surrounding the outside of the cell envelope. They usually consist of polysaccharide; however, in certain bacilli they are composed of a polypeptide (polyglutamic acid). Capsules are often lost during in vitro culture. 5/03/2012 Masdiana Padaga 18
  • 19. Flagella: Polar monotrichous Polar amphitrichous Spirillium Lophotrichous Pseudomonas Spirillum Peritrichous Salmonella SEM of peritrichous strain Proteous Note: bacteria without flagella are called atrichous. 5/03/2012 Masdiana Padaga 19
  • 22. Motility • Flagella consist of a • Almost all Spiral bacteria are number of proteins motile • About 1/2 of Bacilli are including flagellin motile  Identification of • Almost all Cocci are non- motile Bacteria • Bacteria move toward  Pathogenesis attractive stimuli and away from harmful substances  Motility of bacteria and waste products in the process known as chemotaxis . 5/03/2012 Masdiana Padaga 22
  • 23. 5/03/2012 Masdiana Padaga 23
  • 24. Pilli or fimbrae • Filamentous appendages that are shorter, straighter and more numerous that flagella • Conjugation pilli found in certain group of bacteria. • Used for genetic material transfer. • The transfer process is called conjugation. • Antibiotic resistance transfer. • Atatchment pilli, Help bacteria adhare to the surfaces, such as cell surfaces and interface of water and air. • It helps in colonization and pathogenicity. • found mostly in Gram (-) Bacteria 5/03/2012 Masdiana Padaga 24
  • 25. E. coli (pathogenic) 5/03/2012 Masdiana Padaga 25
  • 26. Cell Wall • Main structural component - Peptidoglycan • Peptidoglycan – repeating dissacharide units – polypeptides 5/03/2012 Masdiana Padaga 26
  • 27. Gram-Positive Gram- Negative Peptidoglycan Peptidoglycan Cell Membrane Membrane Outer Membrane Periplasm Peptidoglycan Cytoplasmic Peptidoglycan membrane Periplasmic space Another cell 5/03/2012 Masdiana Padaga 27
  • 28. Bacterial Cell Walls 5/03/2012 Masdiana Padaga 28
  • 29. Gram (+) Cell Wall • NAM N-acetylmuramic acid • NAG N- acetylglucosamine • tetrapeptide side chains • pentaglycine crossbridges • teichoic acid 5/03/2012 Masdiana Padaga 29
  • 30. Gram (-) Cell Wall • NAM • NAG • Tetrapeptide side chains • pentaglycine • 2nd Outer membrane – Lipopolysaccharides (LPS) • Lipid A • O Antigen 5/03/2012 Masdiana Padaga 30
  • 31. Functions of Cell Wall • Maintaining the cell's characteristic shape- the rigid wall compensates for the flexibility of the phospholipid membrane and keeps the cell from assuming a spherical shape • Countering the effects of osmotic pressure • Providing attachment sites for bacteriophages • Providing a rigid platform for surface appendages- flagella, fimbriae, and pili all emanate from the wall and extend beyond it • Play an essential role in cell division • Be the sites of major antigenic determinants of the cell surface 。 • Resistance of Antibiotics 5/03/2012 Masdiana Padaga 31
  • 32. Cell Membrane (Plasma Membrane) • 2 structural component – double layer of phospholipids – proteins • Fluid Mosaic Model 5/03/2012 Masdiana Padaga 32
  • 33. cytoplasmic membrane 5/03/2012 Masdiana Padaga 33
  • 34. 5/03/2012 Masdiana Padaga 34
  • 35. Functions of Cell Membrane • 1. Selective barrier (selectively permeable) • 2. Secretes exoenzymes – amylases – lipases – peptidases – CAN NOT UNDERGO PHAGOCYTOSIS 5/03/2012 Masdiana Padaga 35
  • 36. Functions of Cell Membrane • 3. E.T.S. is located here • 4. Enzymes for cell wall synthesis • 5. If photosynthesis, enzymes are located on membranous structures called thylakoids • 6. Mesosomes - invagination of cell membrane attached to DNA (Binary Fission)? 5/03/2012 Masdiana Padaga 36
  • 37. Endospores  Identification of Bacteria (spores)  Pathogenesis  Resistance • Dormant cell • Resistant to adverse conditions • Produced when starved - high temperatures • Contain calcium dipicolinate - organic solvents DPA, Dipicolinic acid 5/03/2012 •Masdiana Padaga and Clostridium37 Bacillus
  • 38. Method Microscope • Light Microscope • Electron Microscope • Darkfield Microscope • Phase Contrast Microscope • Fluorescence Microscope • Confocal Microscope ) Staining Methods  Simple staining;  Differential staining (Gram stain, Acid-fast stain),  Special staining( Negative stain, 5/03/2012 Spore stain, Flagella stain) 38 Masdiana Padaga
  • 39. 5/03/2012 Masdiana Padaga 39
  • 40. Gram Stain • 1884 Hans Christian Gram • most important stain used in Bacteriology • Divides all Bacteria into 2 groups: – Gram (+) – Gram (-) 5/03/2012 Masdiana Padaga 40
  • 41. Gram Staining 5/03/2012 Masdiana Padaga 41
  • 42. Results • Gram (+) Purple • Gram (-) Red • Difference - due to structure of cell wall – Gram (+) Thick cell wall – Gram (-) Thin cell wall 5/03/2012 Masdiana Padaga 42