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Gudmundur A. Thorisson, Owen Lancaster and Anthony J. Brookes
 Department of Genetics, University of Leicester, Leicester, UK




As in scholarly communication more generally, non-unique person names and the current lack of a global
                                                                                                                                                                                             !!!"#$%&'($%")*#
identification infrastructure for producers of scholarly content makes it difficult to establish the identity of
                                                                                                                                       Box 2: Identifying contributors
authors and other contributors. This in turn creates challenges in attributing credit for contributions to
science, as well as in tracking use/reuse and assessing impact of research outputs.                                                    Challenges
We are developing a series of novel web-based systems and processes for online dissemination of genetic                                Approx. 2/3 of ~6M authors in PubMed share a last name + first initial with at least one author. This
variation and other research data. The technical approach we are exploring utilizes emerging frameworks                                name ambiguity create difficulties in identifying and attributing creators of published works, including
for data identification and citation (Box 1) and for contributor identification (Box 2), in order to allow                               datasets published via online digital repositories. Solving the contributor identification challenge is key
published datasets to be discovered, cited in a scholarly context and unambiguously attributed. The core                               to including these important outputs in the scholarly record.
aim is that of ensuring that data creators are recognized and rewarded for publishing their data. We
argue that, along with other measures, such an incentive-based approach is key to motivating the
sharing of data and other types of digital research outputs in the life sciences.
                                                                                                                                       Emerging solutions
                                                                                                                                       With contributions from GEN2PHEN, the international ORCID initiative (http://www.orcid.org) is
                                                                                                                                       creating a global infrastructure to "support the creation of a permanent, clear and unambiguous record
Box 1: Identifying digital research outputs                                                                                            of scholarly communication".
                                                                                                                                       ORCID will enable identification of contributors via unique IDs and reliably linking them with their
                                                                                                                                       published works, including but not limited to:
Challenges
                                                                                                                                         - Peer-reviewed publications (CrossRef DOIs)
Current methods for monitoring data use/reuse and assessing impact relies on various referencing
standards and conventions. Tracking reuse is difficult, time-consuming and inaccurate, not the least                                      - Datasets (DataCite DOIs)
due to difficulties in identifying the datasets in question.                                                                              - Publications in the 'grey' literature
                                                                                                                                       The new infrastructure will help solve many current
Existing and emerging solutions                                                                                                        identification-related problems and create new
                                                                                                                                       opportuntities, such as:
Assigning digital identifiers (IDs) to published works allows them to be reliably identified and cited.
                                                                                                                                          Discovery:
In order to fulfill the requirements of the scholarly record, IDs should be persistent, globally unique
and citable. Together with unique IDs for contributors (Box 2), this forms the basis of unambiguous                                       - Which other papers were published by co-authors of this paper?
attribution.                                                                                                                              - Which datasets were made available by this research project?
                                                                                                                                         Evaluation:
Digital Object Identifiers (DOIs) are widely used for identifying and citing STM publications, via the                                        - What is the scholarly record of this job applicant?
not-for-profit CrossRef publishers' association (http://www.crossref.org).
                                                                                                                                             - How often were the paper we published cited in the last 2 years?
DOIs for scientific datasets issued via DataCite (http://datacite.org) are increasingly used for scientific
                                                                                                                                             - What is the total no. citations and other references to papers, datasets and other outputs of the
data published in online digital repositories.
                                                                                                                                              project we funded?




          Pilot project: Cafe Variome - facilitating exchange of genetic variation data and attributing data creators

                                                          Diagnostic                                                           Central                                  End-users (e.g.
                                                         laboratories                                                      ‘clearinghouse’                              LSDB curators)
                                                                                                            Publish data                       Retrieve Atom feeds




                                            Submi&ng	
  muta,ons	
  from	
  diagnos,c	
  labs	
  using	
  “Café	
                                                    Data	
  are	
  shared	
  with	
  diverse	
  3rd	
  par,es	
  via	
  manual	
  
                                            Variome	
  enabled”	
  so:ware	
  via	
  simple	
  bu>on	
  click                                                        retrieval	
  or	
  automated	
  feed-­‐based	
  monitoring/retrieval



                    Unique identifier for contributor in ORCID                                                                                                                                    IRISC2011 - Identity in Research Infrastructure
                                                                                                                                                                                                                                 and Scientific Communication
                                                                                                                                                                                               The 2-day IRISC2011 international workshop will be held September 12-13
                                                                                         Data citation: G. A. Thorisson (ORCID:35-883-3523) and O. Lancaster                                   in Helsinki, Finland. This event will bring together key stakeholders and
                                                                                         (ORCID:35-992-3523). 4x variants in BRCA2 gene. Published online via Cafe
                                                                                                                                                                                               experts and help foster collaboration, coordination and awareness in this
                                                                                         Variome. 21 January (2011) doi:10.1255/cafevariome.BRCA2-2352354
                                                                                                                                                                                               area, not only in biomedicine and bioinformatics but in all areas of scientific
                      G. A. Thorisson, Univ. Leicester                                                                                                                                         research.
                          gthorisson@gmail.com
                                                                                                                                                                                               Agenda and other info at http://irisc-workshop.org
                          ORCID:35-883-3523

                                                               Unique DOI name for dataset in DataCite, located at:
                                                                       http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354                                                        For further information please contact gt50@le.ac.uk




                       !"#$%&"#'()'*+,-.-'/0''12.'"+345.6,'7488+,(109)'
                       :.;.,12'<368.=43>'%34?3688.'@<%AB$CCAD$CEFG'+,-.3'?36,1'
                       6?3..8.,1'$CCAHIJ
                                                                                                                                                                 ===J?.,$52.,J43?

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Poster presented at ISMB2011 in Vienna July 18

  • 1. Gudmundur A. Thorisson, Owen Lancaster and Anthony J. Brookes Department of Genetics, University of Leicester, Leicester, UK As in scholarly communication more generally, non-unique person names and the current lack of a global !!!"#$%&'($%")*# identification infrastructure for producers of scholarly content makes it difficult to establish the identity of Box 2: Identifying contributors authors and other contributors. This in turn creates challenges in attributing credit for contributions to science, as well as in tracking use/reuse and assessing impact of research outputs. Challenges We are developing a series of novel web-based systems and processes for online dissemination of genetic Approx. 2/3 of ~6M authors in PubMed share a last name + first initial with at least one author. This variation and other research data. The technical approach we are exploring utilizes emerging frameworks name ambiguity create difficulties in identifying and attributing creators of published works, including for data identification and citation (Box 1) and for contributor identification (Box 2), in order to allow datasets published via online digital repositories. Solving the contributor identification challenge is key published datasets to be discovered, cited in a scholarly context and unambiguously attributed. The core to including these important outputs in the scholarly record. aim is that of ensuring that data creators are recognized and rewarded for publishing their data. We argue that, along with other measures, such an incentive-based approach is key to motivating the sharing of data and other types of digital research outputs in the life sciences. Emerging solutions With contributions from GEN2PHEN, the international ORCID initiative (http://www.orcid.org) is creating a global infrastructure to "support the creation of a permanent, clear and unambiguous record Box 1: Identifying digital research outputs of scholarly communication". ORCID will enable identification of contributors via unique IDs and reliably linking them with their published works, including but not limited to: Challenges - Peer-reviewed publications (CrossRef DOIs) Current methods for monitoring data use/reuse and assessing impact relies on various referencing standards and conventions. Tracking reuse is difficult, time-consuming and inaccurate, not the least - Datasets (DataCite DOIs) due to difficulties in identifying the datasets in question. - Publications in the 'grey' literature The new infrastructure will help solve many current Existing and emerging solutions identification-related problems and create new opportuntities, such as: Assigning digital identifiers (IDs) to published works allows them to be reliably identified and cited. Discovery: In order to fulfill the requirements of the scholarly record, IDs should be persistent, globally unique and citable. Together with unique IDs for contributors (Box 2), this forms the basis of unambiguous - Which other papers were published by co-authors of this paper? attribution. - Which datasets were made available by this research project? Evaluation: Digital Object Identifiers (DOIs) are widely used for identifying and citing STM publications, via the - What is the scholarly record of this job applicant? not-for-profit CrossRef publishers' association (http://www.crossref.org). - How often were the paper we published cited in the last 2 years? DOIs for scientific datasets issued via DataCite (http://datacite.org) are increasingly used for scientific - What is the total no. citations and other references to papers, datasets and other outputs of the data published in online digital repositories. project we funded? Pilot project: Cafe Variome - facilitating exchange of genetic variation data and attributing data creators Diagnostic Central End-users (e.g. laboratories ‘clearinghouse’ LSDB curators) Publish data Retrieve Atom feeds Submi&ng  muta,ons  from  diagnos,c  labs  using  “Café   Data  are  shared  with  diverse  3rd  par,es  via  manual   Variome  enabled”  so:ware  via  simple  bu>on  click retrieval  or  automated  feed-­‐based  monitoring/retrieval Unique identifier for contributor in ORCID IRISC2011 - Identity in Research Infrastructure and Scientific Communication The 2-day IRISC2011 international workshop will be held September 12-13 Data citation: G. A. Thorisson (ORCID:35-883-3523) and O. Lancaster in Helsinki, Finland. This event will bring together key stakeholders and (ORCID:35-992-3523). 4x variants in BRCA2 gene. Published online via Cafe experts and help foster collaboration, coordination and awareness in this Variome. 21 January (2011) doi:10.1255/cafevariome.BRCA2-2352354 area, not only in biomedicine and bioinformatics but in all areas of scientific G. A. Thorisson, Univ. Leicester research. gthorisson@gmail.com Agenda and other info at http://irisc-workshop.org ORCID:35-883-3523 Unique DOI name for dataset in DataCite, located at: http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354 For further information please contact gt50@le.ac.uk !"#$%&"#'()'*+,-.-'/0''12.'"+345.6,'7488+,(109)' :.;.,12'<368.=43>'%34?3688.'@<%AB$CCAD$CEFG'+,-.3'?36,1' 6?3..8.,1'$CCAHIJ ===J?.,$52.,J43?