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Using Online Natural History Databases to
Support Innovation in Undergraduate Education
        Tracy Barbaro, EOL, Harvard Museum of Comparative Zoology
• Introduction to EOL
• How Can I Use EOL in My Classroom?
• Hands On
  – Collections
  – Scientific Writing/Student Contributions
  – Ecosystem Explorer – Species Interactions
EOL.org
What is the Encyclopedia of Life?
EOL in Summary:
    • Global, on-line resource—plants, animals,
        microorganisms
    • Web pages for 1.9 million known species
    • Plus millions more yet to be described
    • Serves authoritative information as well as contributions
      from the general public.

Guiding Principles:

    •   Common format
    •   Freely available
    •   Open Source, Open Access
    •   Collaboratively built
    •   Customizable by user
    •   Never completed
Background
Early 2000's Dan Janzen (U.Pa) and Chris Thompson(SI)
envision online species pages, around the world several
web projects start.
                                                          2003




                                                                 2007
Support
EOL is supported by the John D. and Catherine T. MacArthur Foundation and
the Alfred P. Sloan Foundation and the following institutions:

Atlas of Living Australia
Biodiversity Heritage Library
Chinese Academy of Sciences
La Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO)
Field Museum of Natural History
Harvard University
El Instituto Nacional de Biodiversidad (INBio)
Marine Biological Laboratory
Missouri Botanical Garden
NCB Naturalis - the Netherlands Centre for Biodiversity
New Library of Alexandria
Smithsonian Institution
South African National Biodiversity Institution (SANBI)
Content Partners
EOL serves species information from authoritative content partners, individuals scientists,
citizen scientists, students and the general public. Below are some of our content partners:




                                                                             ..and many more
How Can I Use EOL in My Classroom?
Taxon Pages As Resources for Students
  Information for each species on EOL is aggregated from hundreds of
     content partners into a common template called a Taxon Page.
         Each tab on the taxon page contains different content.
Detailed Information, Media, Maps, Names,
    Multiple Classifications, Literature
Literature
Taxon pages are a great place for finding literature/references: aggregated references for
the entire taxon page and resources from the Biodiversity Heritage Library.
Searching on EOL
You can search for taxa by common name or scientific name. You can also search for EOL
Collections and Communities. You can filter your search results by content type.




  Filter your
  search by
  content type
Trusted and Un-reviewed Content
EOL serves both trusted and un-reviewed content. You can filter your results to show
only the types of content you are looking for.
Tools and Activities

• Collections

• Students Writing Brief Summaries for EOL

• Ecosystem Explorer
Collections
You can “collect” taxon pages, media, maps, etc. on EOL. The items you collect are
links back to the taxon page (or image, video, sound, map, etc.).

Essentially a collection is a grouping of links to taxa of interest. You can annotate and
share this collection with others on EOL.

Using Collections Ideas
Create a collection of….
     • Taxon pages for each of your lab specimens (1)
     • Specimens you normally would not have access to in the lab (1)
     • taxa based on habitat or associations/interactions
     • taxa found on a sampling field trip
     • images or video that exemplify species behavior

1. Source: Encyclopedia of Life Collections: Biodiversity Resources for Biology Teachers. Michael Windelspecht, Ricochet
   Science. Accessed at http://ricochetscience.com/eol_biodiversity/ on 2/22/13



Example Lab Collection: http://eol.org/collections/52874
Student Contributions:
                          EOL Content Priorities
•   You may come across a taxon page with no information. This is because we do not have a content
    provider for this taxa yet. EOL has determined that many of these pages are of high priority.

•   Undergraduate and Graduate students can research and synthesize information about taxa on EOL’s
    high priority taxa list and then summarize this information in an brief summary suitable for the
    general public as part of their coursework.
Student Contributions to EOL
Undergraduate and graduate students can help build EOL by
researching and writing:

   •   Brief species summaries
   •   Comprehensive descriptions
   •   Topics such as ecology, habitat or conservation
   •   More complete taxon pages

Student work is vetted and reviewed by their professors. Over the
past 5 years, students have contributed to hundreds of pages on
EOL! Instructors serve as curators/review and vet student work.

See examples on EOL: http://eol.org/info/student_contributions
Student Contributions Workflow
1. Work with EOL to develop a taxa list for your
   students
2. Introduce EOL project and eol.org to your
   students
3. Students research taxa (species, genus, etc.)
4. Students write a brief summary or other topic(s)
5. Peer Review
6. Instructor review (TA’s are helpful here)
7. Students enter summaries into the class’s
   Education LifeDesk for publishing to EOL taxon
   pages
Publishing to EOL: Education LifeDesk
Student Contributions on EOL
                   Example of student
                   contributed brief summary,
                   references and attribution.
                   Student contributions
                   appear as unreviewed until
                   reviewed by a curator
Education LifeDesk

http://www.edulifedesks.org/home

Guest login:
username: guest
pass: eolguest123

Go to:
http://www.edulifedesks.org/class/8556
Ecosystem Explorer
The EOL Ecosystem Explorer provides a easy way to create engaging graphs of species interactions
within an ecosystem. While still in development, you can view and interact with some example
ecosystems.
Ecosystem Explorer

Example Ecosystem:

http://fieldguides.eol.org/eco/ecovis.php?ecosystem=39
• Under “Selected Species” Click on “Edit”
    • Edit selected taxon

• Click on “Add new”
   • Add a new predator - prey interaction
More Information
Encyclopedia of Life
www.eol.org

EOL Learning + Education
http://education.eol.org/

Questions?

Email: education(at)eol.org

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Using Online Natural History Databases to Support Innovation in Undergraduate Education

  • 1. Using Online Natural History Databases to Support Innovation in Undergraduate Education Tracy Barbaro, EOL, Harvard Museum of Comparative Zoology
  • 2. • Introduction to EOL • How Can I Use EOL in My Classroom? • Hands On – Collections – Scientific Writing/Student Contributions – Ecosystem Explorer – Species Interactions
  • 4. What is the Encyclopedia of Life? EOL in Summary: • Global, on-line resource—plants, animals, microorganisms • Web pages for 1.9 million known species • Plus millions more yet to be described • Serves authoritative information as well as contributions from the general public. Guiding Principles: • Common format • Freely available • Open Source, Open Access • Collaboratively built • Customizable by user • Never completed
  • 5. Background Early 2000's Dan Janzen (U.Pa) and Chris Thompson(SI) envision online species pages, around the world several web projects start. 2003 2007
  • 6. Support EOL is supported by the John D. and Catherine T. MacArthur Foundation and the Alfred P. Sloan Foundation and the following institutions: Atlas of Living Australia Biodiversity Heritage Library Chinese Academy of Sciences La Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO) Field Museum of Natural History Harvard University El Instituto Nacional de Biodiversidad (INBio) Marine Biological Laboratory Missouri Botanical Garden NCB Naturalis - the Netherlands Centre for Biodiversity New Library of Alexandria Smithsonian Institution South African National Biodiversity Institution (SANBI)
  • 7. Content Partners EOL serves species information from authoritative content partners, individuals scientists, citizen scientists, students and the general public. Below are some of our content partners: ..and many more
  • 8. How Can I Use EOL in My Classroom?
  • 9. Taxon Pages As Resources for Students Information for each species on EOL is aggregated from hundreds of content partners into a common template called a Taxon Page. Each tab on the taxon page contains different content.
  • 10. Detailed Information, Media, Maps, Names, Multiple Classifications, Literature
  • 11. Literature Taxon pages are a great place for finding literature/references: aggregated references for the entire taxon page and resources from the Biodiversity Heritage Library.
  • 12. Searching on EOL You can search for taxa by common name or scientific name. You can also search for EOL Collections and Communities. You can filter your search results by content type. Filter your search by content type
  • 13. Trusted and Un-reviewed Content EOL serves both trusted and un-reviewed content. You can filter your results to show only the types of content you are looking for.
  • 14. Tools and Activities • Collections • Students Writing Brief Summaries for EOL • Ecosystem Explorer
  • 15. Collections You can “collect” taxon pages, media, maps, etc. on EOL. The items you collect are links back to the taxon page (or image, video, sound, map, etc.). Essentially a collection is a grouping of links to taxa of interest. You can annotate and share this collection with others on EOL. Using Collections Ideas Create a collection of…. • Taxon pages for each of your lab specimens (1) • Specimens you normally would not have access to in the lab (1) • taxa based on habitat or associations/interactions • taxa found on a sampling field trip • images or video that exemplify species behavior 1. Source: Encyclopedia of Life Collections: Biodiversity Resources for Biology Teachers. Michael Windelspecht, Ricochet Science. Accessed at http://ricochetscience.com/eol_biodiversity/ on 2/22/13 Example Lab Collection: http://eol.org/collections/52874
  • 16.
  • 17. Student Contributions: EOL Content Priorities • You may come across a taxon page with no information. This is because we do not have a content provider for this taxa yet. EOL has determined that many of these pages are of high priority. • Undergraduate and Graduate students can research and synthesize information about taxa on EOL’s high priority taxa list and then summarize this information in an brief summary suitable for the general public as part of their coursework.
  • 18. Student Contributions to EOL Undergraduate and graduate students can help build EOL by researching and writing: • Brief species summaries • Comprehensive descriptions • Topics such as ecology, habitat or conservation • More complete taxon pages Student work is vetted and reviewed by their professors. Over the past 5 years, students have contributed to hundreds of pages on EOL! Instructors serve as curators/review and vet student work. See examples on EOL: http://eol.org/info/student_contributions
  • 19. Student Contributions Workflow 1. Work with EOL to develop a taxa list for your students 2. Introduce EOL project and eol.org to your students 3. Students research taxa (species, genus, etc.) 4. Students write a brief summary or other topic(s) 5. Peer Review 6. Instructor review (TA’s are helpful here) 7. Students enter summaries into the class’s Education LifeDesk for publishing to EOL taxon pages
  • 20. Publishing to EOL: Education LifeDesk
  • 21. Student Contributions on EOL Example of student contributed brief summary, references and attribution. Student contributions appear as unreviewed until reviewed by a curator
  • 22. Education LifeDesk http://www.edulifedesks.org/home Guest login: username: guest pass: eolguest123 Go to: http://www.edulifedesks.org/class/8556
  • 23. Ecosystem Explorer The EOL Ecosystem Explorer provides a easy way to create engaging graphs of species interactions within an ecosystem. While still in development, you can view and interact with some example ecosystems.
  • 24. Ecosystem Explorer Example Ecosystem: http://fieldguides.eol.org/eco/ecovis.php?ecosystem=39 • Under “Selected Species” Click on “Edit” • Edit selected taxon • Click on “Add new” • Add a new predator - prey interaction
  • 25. More Information Encyclopedia of Life www.eol.org EOL Learning + Education http://education.eol.org/ Questions? Email: education(at)eol.org

Hinweis der Redaktion

  1. EOL is available at EOL.org.
  2. The Encyclopedia of Life is a collaborative effort among scientist and the general public to bring information together about all 1.9 million named and known species, in a common format, freely available on the internet.
  3. In the early 2000’s people were starting to talk about and envision an online species database. Some web projects start, but mostly human led projects. By 2003, EOL Wilson had written an article in Ecology and Evolution, at the same time that technology was advancing at a rapid pace,
  4. EOL brings together information from sources you may already use, such as the IUCN, Amphibia Web, the Smithsonian and countless others. All content on EOL is fully attributed and licensed under Creative Commons Copyright License or Public Domain.
  5. Information for each species on EOL is aggregated from hundreds of content partners into a common template called a Taxon Page. Each tab on the taxon page contains different content.