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GENETIC 
ENGINEERING 
By, 
Dr. Priyanka Sharma 
II year MDS 
Department of Public Health Dentistry 
JSS Dental College & Hospital 1 
1
CONTENTS 
1) INTRODUCTION 
2) BASICS OF GENETIC ENGINEERING 
3) HISTORY OF GENETIC ENGINEERING 
4) GENERAL APPLICATION OF GENETIC ENGINEERING 
5) GENETIC ENGINEERING IN DENTISTRY 
- VARIOUS TECHNIQUES OF GENETIC ENGINEERING 
6) GENETIC COUNSELLING & ROLE OF DENTIST 
7) SUMMARY 
8) CONCLUSION 
9) REFERENCES 
2 
2
CONTENTS 
3 
3
INTRODUCTION 
Genetic engineering is a part of 
biotechnology. 
Biotechnology is the use of living 
systems and organisms to develop or 
make useful products, or "any 
technological application that uses 
biological systems, living organisms or 
derivatives thereof, to make or modify 
products or processes for specific use" 
(UN Convention on Biological 
Diversity, Art. 2). 
4 
4
INTRODUCTION continuation.. 
 Biotechnology is a huge topic. 
 Its hard to define its exact boundaries. 
 Some European scientists divide the field into : 
1) Red biotechnology 
2) Green biotechnology 
 Some divides it into : 
1) White 
2) Blue 
 Biotechnology falls under many umbrellas 
which is basically considered as life science. 
Book : Biotechnology & Genetic engineering (Kathy wilson peacock) 
5 
2010,Edi:1 : Page No. 4 (Chapter 1) 
5
Biology & Zoology 
Cell biology 
Microbiology 
Molecular Biology 
Physiology, Ecology, 
Embryology 
Genetics, 
Population genetics, 
Epigenetics 
Proteonomics & 
Bioinformatics 
Book : Biotechnology & Genetic engineering 
6 
6
7 
INTRODUCTION continuation.. 
• Genetics – science of genes, heredity 
and variation in living organisms. 
• Genetics deals with the molecular structure 
and function of genes, and gene behavior in 
context of a cell or organism (e.g. dominance 
and epigenetics ). 
• Patterns of inheritance from parent to 
offspring, and gene distribution, variation and 
change in populations = Population genetics. 
7 
Book : Genetics and the Organism: Introduction
8 
INTRODUCTION continuation.. 
Essence 
Of 
Genetics 
• Chromosome 
• Packaged and organized chromatin, a complex of 
macromolecules found in cells, consisting of DNA, protein and 
RNA. 
Essence 
Of 
Genetics 
• DNA 
• A molecule that encodes the genetic instructions used in the 
development and functioning of all known living organisms and 
many viruses. 
Essence 
Of 
Genetics 
• Genetic Variation 
• Permanent change in the chemical structure of genes brought 
about by mutation, important in providing genetic material for 
natural selection. 
Essence 
Of 
Genetics 
• Heredity 
• The study of heredity in biology is called genetics, which includes 
the field of epigenetics. 
8 
Book : Genetics and the Organism: Introduction
9 
9 
U S National Library of Medicine
10 
10 
A form – 
11 bp/ turn 
B form- 
10 bp/ turn 
Z form- 
12 bp/ turn 
From Lippincotts - Illustrated Biochemistry
11 
11 
Deletion Inversion Duplication 
Insertion Translocation
12
INTRODUCTION continuation.. 
Various Branches of Genetics 
Behavioural 
genetics 
Classical 
genetics 
Developmental 
genetics 
Conservation 
genetics 
Ecological 
genetics Evolutionary 
genetics 
Genetic 
engineering 
& 
Metagenesis 
13 
13 
Book : Genetics and the Organism: Introduction
CONTENTS 
14 
14
BASICS OF 
GENETIC ENGINEERING 
• Different terms used for genetic 
engineering : 
1) Gene manipulation 
2) Gene cloning 
3) Recombinant DNA technology 
4) Genetic modification 
5) New genetics 
An Introduction to Genetic Engineering (Desmond S. T. Nicholl) Edi :3rd 2008 
15 
Chapter 2 . Page 3 
15
 Direct manipulation of an organism's 
genome using biotechnology . 
First isolating and 
copying the 
genetic material of 
interest 
using molecular 
cloning methods 
Generate a 
DNA sequence 
New DNA 
inserted in the host 
genome 
BASICS OF 
GENETIC ENGINEERING CONTINUATION.. 
An Introduction to Genetic Engineering (Desmond S. T. Nicholl) 
Edi :3rd 2008 Chapter 2. 
16
17 
Miller et al(2000). An Introduction to Genetic Analysis (7th ed.). 
17
18 
18 
CONTENTS 
1) INTRODUCTION 
2) BASICS OF GENETIC ENGINEERING 
4) GENETIC ENGINEERING IN DENTISTRY 
- VARIOUS TECHNIQUES OF GENETIC ENGINEERING 
5)GENETIC COUNSELLING AND ROLE OF A DENTIST 
1) SUMMARY 
2) CONCLUSION 
3) REFERENCES
Genetic inheritance was first 
discovered by Gregor Mendel in 1865 
following experiments crossing peas. 
• Although largely ignored for 34 years he 
provided the first evidence of hereditary 
segregation and independent assortment 
In 1889 Hugo de Vries came up with the name 
"(pan)gene" for after postulating that particles 
are responsible for inheritance of characteristics 
Term "genetics" was coined by William 
Bateson in 1905. 
19
In 1928 Frederick Griffith proved the 
existence of a "transforming principle" involved 
in inheritance, which Avery, MacLeod and 
McCarty later (1944) identified as DNA. 
Edward Lawrie Tatum and George Wells 
Beadle developed the central dogma that genes 
code for proteins in 1941. 
The double helix structure of DNA was 
identified by James Watson and Francis 
Crick in 1953. 
20
In 1970 Hamilton Smiths lab 
discovered restriction enzymes that allowed 
DNA to be cut at specific places and separated 
out on an electrophoresis gel. 
• This enabled scientists to isolate genes from an 
organism's genome. 
DNA ligases, that join broken DNA together, 
had been discovered earlier in 1967 and by 
combining the two enzymes it was possible to 
"cut and paste" DNA sequences to 
create recombinant DNA. 
Plasmids, discovered in 1952, became 
important tools for transferring information 
between cells and replicating DNA sequences. 
21
Frederick Sanger developed a method for 
sequencing DNA in 1977, greatly increasing the 
genetic information available to researchers 
Polymerase chain reaction (PCR), developed 
by Kary Mullis in 1983, allowed small sections 
of DNA to be amplified and aided identification 
and isolation of genetic material 
Artificial competence was induced 
in Escherichia coli in 1970 when Morton 
Mandel and Akiko Higa showed that it could 
take up bacteriophage λ after treatment with 
calcium chloride solution (CaCl2). 
22
Two years later, Stanley Cohen showed that 
CaCl2 treatment was also effective for uptake of 
plasmid DNA. 
Transformation using electroporation was 
developed in the late 1980s, increasing the 
efficiency and bacterial range 
In 1972 Paul Berg utilised restriction enzymes 
and DNA ligases to create the first recombinant 
DNA molecules. 
23
• Herbert Boyer and Stanley N. Cohen took 
Bergs work a step further and introduced 
recombinant DNA into an bacterial cell. 
In 1981 the laboratories of Frank Ruddle, 
Frank Constantini and Elizabeth Lacy 
injected purified DNA into a single-cell mouse 
embryo and showed transmission of the genetic 
material to subsequent generations. 
On June 19, 2013 the leaders of three research 
teams who originated the technology, Robert T. 
Fraley of Monsanto; Marc VanMontagu of Ghent 
University in Belgium and founder of Plant Genetic 
Systems and CropDesign ; and Mary-Dell 
Chilton ofWashington University in St. 
Louis and Syngenta were awarded with the World 
Food Prize 
Gordon, J.; Ruddle, F. (1981). "Integration and stable germ line transmission 24 
of 
genes injected into mouse pronuclei". Science 214 (4526): 1244.
The first recorded knockout mouse was created 
by Mario R. Capecchi, Martin 
Evans and Oliver Smithies in 1989. They are 
used to study gene function and make useful 
models of human diseases. 
In 1992 onco-mice with tumor suppressor 
genes knocked out were generated. 
Creating Knockout rats are much harder and has 
only been possible since 2003 
Bacteria synthesising human insulin were 
developed in 1979, being used as a treatment for 
the first time in 1982 
Zan, Y; Haag, J. D.; Chen, K. S.; Shepel, L. A.; Wigington, D; Wang, Y. R.; Hu, R; Lopez-Guajardo, C. 
C.; Brose, H. L.; Porter, K. I.; Leonard, R. A.; Hitt, A. A.; Schommer, S. L.; Elegbede, A. F.; Gould, M. 
N. (2003). “Production of knockout rats using ENU mutagenesis and a yeast-based screening 
25 
assay". Nature Biotechnology 21(6): 645–51.
26 
In 1988 the first human antibodies were 
produced in plants. 
The first animal to synthesise transgenic 
proteins in their milk were mice, engineered 
to produce human tissue plasminogen 
activator. 
With the discovery of microRNA in 1993 
came the possibility of using RNA 
interference to silence an organisms 
endogenous genes 
- Peng, S. (2006). "A transgenic approach for RNA interference-based 
genetic screening in mice". Proceedings of the National 
Academy of Sciences 103 (7): 2252–2220. 
- Vaucheret, H.; Chupeau, Y. (2011). plant miRNAs regulate gene 
expression in animals Cell Research 22 (1): 3–5.
27 
 Improved our 
understanding of 
genetics. 
 His research helped to 
make organ 
transplantations 
possible. 
Dr. Bernard Amos 
27
• His work cloned frogs 
laid the foundations 
for somatic cell 
nuclear transfer, the 
application of which 
led to Dolly the sheep. 
28 
John Gurdon 
28
Worked out the 
Structure of 
Proteins. 
29 
Linus Pauling 
29
30 
“The Father of Cloning” 
Hans Spermann 
30
31 
“The Father of Genetics” 
Gregor Mendel 
31
• He noticed that there is 
a pattern in the 4 bases: 
Adenine, Guanine, 
Cytosine and Thymine. 
32 
• A=T and G=C. 
Erwin Chargaff 
32
In 1973 created 
a transgenic 
mouse by 
introducing foreign 
DNA into its embryo, 
making it the world’s 
first transgenic 
animal. 
33 
Rudolf Jaenisch 
33
34 
34 
CONTENTS 
1) INTRODUCTION 
2) BASICS OF GENETIC ENGINEERING 
3) HISTORY OF GENETIC ENGINEERING 
5) GENETIC ENGINEERING IN DENTISTRY 
- VARIOUS TECHNIQUES OF GENETIC ENGINEERING 
6) 5)GENETIC COUNSELLING AND ROLE OF A DENTIST 
7) SUMMARY 
8) CONCLUSION 
9) REFERENCES
GENERAL APPLICATIONS OF 
GENETIC ENGINEERING 
][38] 
35 
Eg: transgenic plants produce natural 
pesticide to resist to pest 
35
Engineered Mammals 
A monkey named ANDi, 
for "inserted DNA", in a 
picture released in 
January 2001. ANDi was 
born in October 2000 at 
the Oregon Health 
Science University after 
receiving an extra bit of 
genetic material to 
become the world's first 
genetically modified 
non-human primate 
36 
36
37 
Cloning Dolly 
• Sheep A: donate body cell nucleus 
• Sheep B: donate an egg cell without nucleus 
• Sheep C: surrogate mother 
A B C 
Dolly 
37 
Who’s its 
mother?
38 
38 
CONTENTS 
1) INTRODUCTION 
2) BASICS OF GENETIC ENGINEERING 
3) HISTORY OF GENETIC ENGINEERING 
4) GENERAL APPLICATION OF GENETIC ENGINEERING 
6) 5)GENETIC COUNSELLING AND ROLE OF A DENTIST 
7) SUMMARY 
8) CONCLUSION 
9) REFERENCES
GENETICS & ORAL HEALTH 
39 
39 
Craniofacial & 
Tooth 
morphogenesis 
Agenesis 
GENETICS 
Dental caries 
Periodontistis 
Cleft lip & 
Palate 
Genetic 
disorders / 
Abnormalities 
Oral Cancer Malocclusion 
Behavorial 
Genetics 
Pharmacogenetics
TECHNIQUES 
OF 
GENETIC ENGINEERING 
Tools and techniques 
Methods in recombinant DNA 
technology 
Genetically modified organisms 
Genetic treatments 
40 
40
41 
TECHNIQUES 
OF 
GENETIC ENGINEERING 
Methods in recombinant DNA 
technology 
Genetically modified organisms 
Genetic treatments 
41
 DNA: The Raw Material 
– Heat-denatured DNA 
• DNA strands separate if heated 
to just below boiling 
• Exposes nucleotides 
• Can be slowly cooled and 
strands will renature 
42 
42
Restriction Endo-nucleases 
• Enzymes that can clip strands of DNA 
crosswise at selected positions 
• Each has a known sequence of 
4 to 10 pairs as its target 
• Can recognize and clip at palindromes 
43 
43
• Can be used to cut DNA in to smaller 
pieces for further study or to remove 
and insert sequences. 
• Can make a blunt cut or a “sticky end” 
• The pieces of DNA produced are 
called restriction fragments. 
• Differences in the cutting pattern of specific 
restriction endonucleases give rise to 
restriction fragments of differing lengths-restriction 
fragment length polymorphisms. 
44 
44
45 
45
 Ligase and Reverse Transcriptase 
• Ligase: Enzyme necessary to seal 
sticky ends together 
• Reverse transcriptase: enzyme that is 
used when converting RNA into DNA. 
46 
46
47 
47
ANALYSIS OF 
DNA 
Gel 
electrophoresis 
Polymerase 
Chain Reaction 
48 
48
49 
49 
 Gel electrophoresis: produces a readable 
pattern of DNA fragments
GEL ELCTROPHORESIS 
• APPLICATIONS: 
Estimation of the size of DNA 
molecules following restriction 
enzyme digestion, e.g. in restriction 
mapping of cloned DNA. 
Analysis of PCR products, e.g. in 
molecular genetic diagnosis or genetic 
fingerprinting. 
50 
50
51 
51 
• Some techniques to analyze DNA and 
RNA are limited by the small amounts of 
test nucleic acid available 
• Polymerase chain reaction (PCR) 
rapidly increases the amount of DNA in a 
sample 
• So sensitive- could detect cancer from a 
single cell 
• Can replicate a target DNA from a few 
copies to billions in a few hours
52 
52
53 
53 
Three Basic Steps that Cycle 
• Denaturation 
– Heat to 94°C to separate in to two strands 
– Cool to between 50°C and 65°C 
• Priming 
– Primers added in a concentration that favors binding 
to the complementary strand of test DNA 
– Prepares the two strands (amplicons) for synthesis 
• Extension 
– 72°C 
– DNA polymerase and nucleotides are added 
– Polymerases extend the molecule 
• The amplified DNA can then be analyzed
54 
54 
• Relative sizes of nucleic acids 
usually denoted by the number of 
base pairs (bp) they contain. 
• DNA Sequencing: Determining the 
Exact Genetic Code 
– Most detailed information comes from 
the actual order and types of bases- 
DNA sequencing 
– Most common technique: Sanger DNA 
sequence technique
55 
55
56 
56 
• Two different nucleic acids can hybridize by uniting at 
their complementary regions. 
• Gene probes: specially formulated oligonucleotide 
tracers 
– Short stretch of DNA of a known sequence 
– Will base-pair with a stretch of DNA with a 
complementary sequence if one exists in the test sample 
• Can detect specific nucleotide sequences in unknown 
samples. 
• Probes carry reporter molecules (such as radioactive or 
luminescent labels) so they can be visualized. 
• Southern blot- a type of hybridization technique
57 
57 
• Southern blotting involves the transfer of DNA 
from a gel to a membrane, followed by detection 
of specific sequences by hybridization with a 
labeled probe. 
• Northern blotting, RNA is run on a gel. 
• Western blotting entails separation of proteins on 
an SDS gel, transfer to a nitrocellulose membrane, 
and detection proteins of interest using antibodies.
58 FIGURE 21: Southern blot: Identifying Specific DNA Fragments 
(Edward Southern--the pioneer) 
or gentle vacuum 
pressure 
Drying or exposure 
to UV light 
Probes: Isotope or chemical 
Gel is soaked in 
alkali buffer to 
denature DNA
Northern blotting is similar to Southern blotting, 
but involves the transfer of RNA from a gel to a 
membrane 
RNA 
59
Northern blotting: Measuring gene activity 
Poly(A)+ RNA: from rat tissues 
Probe: G3PDH (glyceraldehyde-3-phosphate dehydrogenase) 
60
Western blotting 
61 
• Western blotting entails separation of proteins on 
an SDS gel, transfer to a nitrocellulose membrane, 
and detection proteins of interest using antibodies. 
wikipedia
Western blot 62
Blotting Methods 
63 
• Antibodies can recognize the protein of interest or 
an epitope tag. 
• epitope tag – A short peptide sequence that 
encodes a recognition site (“epitope”) for an 
antibody, typically fused to a protein of interest for 
detection or purification by the antibody. 
Human influenza hemagglutinin (HA): YPYDVPDYA 
The HA tag is derived from the HA-molecule corresponding to amino 
acids 98-106 has been extensively used as a general epitope tag in 
expression vectors.
64 
64
65 
65 
• Probes applied to intact cells 
• Observed microscopically for the 
presence and location of specific 
genetic marker sequences 
• Effective way to locate genes on 
chromosomes
• Gene expression array are used to detect the 
level of all the expressed genes in an 
experimental sample. 
• SNP arrays permit genome-wide genotyping of 
single nucleotide polymorphisms. =>use 
allele-specific oligonucledtide probe 
• Array comparative genome hybridization 
(array-CGH) allows the detection of copy 
number changes in any DNA sequence 
compared between two samples. 
66
DNA 67 
Microarrays 
• DNA microarrays 
comprise known DNA 
sequences spotted or 
synthesized on a small 
chip. 
Microarrays show the 
levels of all the 
expressed genes in an 
experimental sample.
68 
TECHNIQUES 
OF 
GENETIC ENGINEERING 
Tools and techniques 
Genetically modified organisms 
Genetic treatments 
68
69 
69 
Methods in Recombinant DNA 
Technology 
• Primary intent of recombinant DNA 
technology- deliberately remove 
genetic material from one organism and 
combine it with that of a different 
organism. 
• Form genetic clones 
– Gene is selected 
– Excise gene 
– Isolate gene 
– Insert gene into a vector 
– Vector inserts DNA into a cloning host
70 
70 
Methods in Recombinant DNA 
Technology
71 
71 
Technical Aspects of Recombinant 
DNA and Gene Cloning 
• Strategies for obtaining genes in an 
isolated state 
– DNA removed from cells, separated into 
fragments, inserted into a vector, and 
cloned; then undergo Southern blotting and 
probed 
– Gene can be synthesized from isolated 
mRNA transcripts 
– Gene can be amplified using PCR 
• Once isolated, genes can be maintained 
in a cloning host and vector (genomic 
library)
72 
72 
Characteristics of Cloning 
Vectors 
• Capable of carrying a significant piece of the 
donor DNA 
• Readily accepted by the cloning host 
• Must have a promoter in front of the cloned 
gene 
• Vectors (such as plasmids and 
bacteriophages) should have three important 
attributes: 
– An origin of replication somewhere on the 
vector 
– Must accept DNA of the desired size 
– Contain a gene that confers drug resistance to 
their cloning host
73 
73
74 
74 
Characteristics of Cloning Hosts
75 
APPLICATIONS 
OF 
GENETIC ENGINEERING 
Tools and techniques 
Methods in recombinant DNA 
technology 
Genetically modified organisms 
75
76 
76 
TREATMENT OF 
GENETIC DISEASE 
• Conventional approach 
• Gene Therapy
CONVENTIONAL APPROACH 
77 
77 
OF TREATMENT 
• Enzyme induction by drugs 
• Replacement of deficient enzymes / 
proteins 
• Replacement of deficient vitamin / co-enzyme 
• Replacement of deficient product 
• Substrate restriction in diet 
• Drug therapy 
• Drug avoidance 
• Replacement of diseased tissue 
• Removal of disease tissue
Genomic medicine 78 
use of genotypic analysis (DNA 
testing) to enhance quality of medical 
care, including 
78 
- presymptomatic 
identification 
- preventive intervention 
- selection of 
pharmacotherapy 
- design of medical care
79 
79 
GENE THERAPY 
Replacement of a deficient gene / 
gene product or correction of an 
abnormal gene. 
2 TYPES: 
i. Germ-line gene therapy – changes 
will be passed on to subsequent 
generations 
ii. Somatic Cell gene therapy – 
changes will not be passed on to 
future generations
Gene Therapy 
• Gene transfer for the purpose of 
treating human disease. 
• Transfer of new genetic material as 
well as manipulation of existing 
genetic material. 
(Genetic engineering) 
in vivo ex vivo 
80
81
Gene therapy 
Potential Uses 
• Treatment of recurrent disease 
• Adjuvant treatment 
• Localized distant metastatic disease 
82
Delivery systems / vectors 
 Non – viral 
- Electropolation 
- DEAE-dextran 
- Calcium phosphate 
- Liposomes 
-Naked DNA 
 Viruses 
Retroviruses 
Adenoviruses 
Adeno-associated viruses 
Herpes virus 
Gene therapy 
83
Gene therapy 
84
Gene therapy in dentistry 
1. Bone repair 
• Mesenchymal stem –cell mediated 
gene therapy (BMPs) 
• Using adenoviral vector 
• Transfer of Platelet derivative growth 
factor (PDGF) 
• Bone sialoprotein delivery (in-vivo) 
2. Salivary glands 
• Irreversible salivary gland 
dysfunction 
Gene therapy 
85
Gene therapy 
• Adenovirus encoding human AQP1 
(water channel protein) – irradiated 
salivary gland hyposalivation. 
• Autoimmune diseases 
Sjogren syndrome : 
cytokines inflammation 
adeno-associated virus, AAV, 
serotype2 IL-10 transfer using 
recombinant AAV2 vector – 
salivary glands hyposalivation . 
86
Gene therapy 
87 
87
• Gene therapeutics 
Gene therapy 
88 
local (exocrine) systemic (endocrine) 
(oral, pharyngeal, (single protein & 
esophageal) deficiency) 
Eg mucosal cadidiasis Eg hGH 
• Azole resistant 
• Recombinant adenoviral vector encoding H3
Gene therapy 
• Pain 
Virus vector – mediated transfer of genes 
encoding opiate peptides 
peripheral & central neurons 
Anti-noceptive effects 
89 
Direct gene delivery – articular surface TMJ
• Keratinocytes Gene therapy – systemic 
human aplipoprotein E, factor IX, 
growth hormone and IL-10 into 
bloodstream. 
• DNA vaccinations 
Gene therapy 
90
Gene therapy 
• Gene gun-based DNA vaccination against 
infectious diseases – oral mucosa 
(Wang J 2003) 
• Caries vaccine 
91
• Subunit Vaccines 
Gene therapy 
- synthetic peptide vaccines 
- recombinant vaccines 
• Conjugate Vaccines 
• Routes to Protective Responses 
- oral 
- intranasal 
- tonsillar 
- rectal 
92 
• Adjuvants and Delivery Systems 
Cholera & E coli, microcapsules, liposomes
Human applications 
Gene therapy 
93 
- Active immunization ( 7 trials) 
- Passive immunization ( cow’s milk, 
chicken eggs, transgenic plant antibody)
Gene therapy 
94 
Future Strategies of Gene Therapy 
in Preventing Periodontal Diseases 
• Gene Therapeutics-Periodontal 
Vaccination 
• Genetic Approach to Biofilm 
Antibiotic Resistance 
• An In vivo Gene Transfer by 
Electroporation for Alveolar 
Remodelling 
• Tight Adherence Gene for the Control 
of Periodontal Disease Progression 
• Antimicrobial Gene Therapy to 
Control Disease Progression 94
Gene therapy 
95 
95
• AIDS vaccine 
• HPV vaccine 
• HSV vaccine 
 Head & neck cancer 
Gene therapy 
96
Current gene therapies for cancer 97 
Mechanism Goal Development 
stage 
Oncogene 
down-regulation 
therapy 
Delete 
defective 
gene 
Inhibit tumor 
cell growth 
Pre-clinical 
Gene 
addition 
therapy 
Add tumor 
suppressor 
gene 
Kill tumor cell Clinical trial 
Anti-sense 
RNA 
Abrogate 
genes 
stimulating 
tumor growth 
Inhibit tumor 
cell growth 
Clinical trial 
Immunothera 
py 
Enhance 
immune 
surveillance 
Enhance 
immunogenic 
ity of tumor 
cell 
Clinical trial
Anti-angiogenesis 
therapy 
Transfer 
gene to 
tumor cells 
to block 
angiogenesis 
Inhibit tumor 
progression 
Pre-clinical 
Drug 
resistance 
gene therapy 
Transfer 
cytoprotectiv 
e gene 
Decrease 
toxicity of 
chemotherap 
y 
Clinical trial 
Tumor-cell 
killing 
viruses 
Introduce 
viruses that 
destroy 
tumor cells 
as part of 
replication 
cycle 
Kill tumor 
cells 
Pre-clinical 
Suicide gene 
therapy 
Transfer 
gene 
encoding 
pro-drug 
activating 
enzyme 
Kill tumor 
cell & 
enhance 
chemotherap 
y 
Clinical trial 
98
99 HUMAN GENOME 
99 
PROJECT 
Objectives: 
i. Sequencing of human genomes 
ii. Mapping of human inherited diseases 
iii. Development of new DNA 
technologies 
iv. Development of bio-informatics 
v. Comparitive Genomics 
vi. Functional Genomics
100 
TISSUE ENGINEERING 
• Tissue Engineering is a general name 
of biomedical fields to enable cells to 
enhance their proliferation, 
differentiation, and morphological 
organization for induction of tissue 
regeneration, resulting in regenerative 
medical therapy of diseases. 
100
101 
Stem cells in regenerative medicine 
• A stem cell is defined as a cell that can 
continuously produce unaltered 
daughters and, furthermore, has the 
ability to generate cells with different 
and more restricted properties. 
• These cells can either multiply 
(progenitors or transit amplifying cells) 
or be committed to terminal 
differentiation. 
• Stem cells are self-renewing and thus 
can generate any tissue for a lifetime. 
• This is a key property for a successful 
therapy. 101
102 
102
103 
103
104 
104
105 
105
106 
106
107 
GENETIC COUNSELLING 
A process of communication and education 
which addresses concerns relating to the 
development and / or transmission of a 
hereditary disorder. 
STEPS IN GENETIC COUNSELLING 
107 
- Diagnosis 
- Risk assessment 
- Communication 
- Discussion of options 
- Long term contact & support
108 
108 
DIAGNOSIS 
• History 
• Examination 
• Investigation 
• Only when accurate diagnosis is 
possible 
• When etiological heterogeneity is 
present
109 
RISK ASSESSMENT 
The good side of the coin should also 
be emphasized 
109 
ARBITRARY GUIDE 
 1 in 10 - High risk 
 1 in 20 - Low risk 
 Intermediate values - Moderate risk
110 
LONG TERM CONTACT & 
110 
SUPPORT 
• Counselling centers should maintain 
informal contact with families 
through a network of genetic 
associates 
• Genetics registers provide a useful 
means in ensuring effective contact
111 
NEONATAL SCREENING 
111 
To prevent subsequent morbidity 
POPULATION CARRIER 
SCREENING 
The branch of medical genetics 
which is concerned with 
screening and the prevention of 
genetic disease on a population 
basis is known as community 
genetics.
PRENATAL DIAGNOSIS 112 
Ability to detect abnormality in an 
unborn child. 
112 
TECHNIQUES 
I. Non invasive 
- Maternal Serum screening 
- Ultra sound 
II. Invasive 
- Amniocentesis 
- Chorionic Villus Sampling
INDICATIONS FOR 113 
113 
PRENATAL DIAGNOSIS 
• Advanced maternal age 
• Previous child with a genetic 
abnormality 
• Family History of 
- Chromosome abnormality 
- Single gene disorder 
- Neural tube defect 
- Other congenital structural 
abnormalities 
• Abnormalities identified in pregnancy 
Eg. Poor fetal growth
114 
114 
• Other High risk factors 
- Parental Consanguinity 
- Poor obstetric history 
Eg: Recurrent miscarriages 
Previous unexplained still 
birth 
- Maternal illness 
Eg: Poorly controlled IDDM 
Maternal epilepsy 
Treatment with Sodium 
Valproate
IDENTIFY GENETIC DISEASE 
1. Build the pedigree 
2. Analyse 
3. Risk of recurrence 
4. Decision 
115
Role of dentist as genetic 
counselor 
• Oral manifestations 
• Correct identification 
• Diagnosis 
• Referral 
• Suggestion 
• Screening for dental diseases 
DNA probes 
116
Future prospects 
117 
• Bioengineering 
• Nanodentistry 
• Biomimetics 
• Molecular Epidemiology ( Variation 
Genetics )
118 
118
119 
Genetic 
engineering 
Enabling 
technology 
Cutting,modifying 
and joining DNA 
molecules 
enzymes 
Generation 
of DNA 
fragments 
Restriction 
enzyme 
DNA Ligase 
Joining to a 
vector or DNA 
Molecule 
Introduction 
into the host 
cell 
Selection of 
desired 
sequence 
Arose from 
Gene cloning 
Recombinant 
DNA 
Molecular cloning 
Pure science, 
Biotechnology, 
Medicine, 
Dentistry 
Legal and 
ethical 
considerations 
Microbial & 
Molecular 
genetics 
In 1972 
Stanford 
University 
Is also known as 
Has application in 
But raises some 
was first achieved 
Is an 
That involves 
using 
Such as 
Requires four steps 
Can be used for 
used for
CONCLUSION 
120 
• Biotechnology as a fast developing 
technology as well as science , has 
already shown its impact on different 
aspects of day-to-day human life such 
as public health pharmaceuticals, food 
and agriculture industries, 
bioenergetics and information 
technology. 
120
121 
• As it has potential to ensure food 
security, dramatically reduce hunger 
and malnutrition and reduce rural 
poverty , particularly in developing 
countries , Now it is very clear that 
biotechnology is the key technology 
for the 21st century and the science of 
the future. 
121
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3. Dhar PK. Genetics in pediatric dentistry. In: Tandon S. Textbook of 
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5 Tortora GJ, Grabowski SR. Cellular level of organization. 10th ed. John 
wiley & sons, USA. 84-97. 
6 Pashayan HM, Feingold M. Selected syndromes in pedodontics. 
White GE. Clinical oral pediatrics. Quintessence International. Tokyo. 
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7 Joerde LB, Carey JC, White RL. Genetic Variation: Its Origin and 
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ed. Toronto: Mosby; 1995. p. 30-56. 
8 Tencate AR et al. Development of tooth and its supporting structures. 
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9 Tandon S, Bhat S. Developing dentition and its disturbances. In: 
Tandon s. Textbook of pedodontics. Ed. Paras publishing . 2001. 85- 
105.
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11 Anderson M. Risk Assessment and Epidemiology of Dental 
Caries: Review of Literature. Pediatr Dent 2002; 24(5): 377- 
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12 Sofaer JA. Host genes and dental caries. Br Dent J 1993; 175: 
403-409. 
13 Shuler Cf. Inherited risks for susceptibility to dental caries. J 
Dent Educ 2001; 65(10): 1038-1045. 
14. Hart TC & Kornman KC. Genetic factors in pathogenesis of 
periodontitis. Periodont 2000 1997; 14: 202-15. 
15 Michalowicz. Genetic & heritable risk factors in periodontal 
disease. J Periodontol 1994; 65: 479-88.
16 Cobourne MT. the complex genetics of cleft lip & palate. Euro J 
Ortho 2004; 26: 7-16. 
17 Mossey PA et al. The heritability of malocclusion. The influence of 
genetics in malocclusion. Br J Ortho 1999; 26: 195-203. 
18 Partridge M. Oral cancer: the genetic basis of disease. Dent Update 
2000; 27: 242-248. 
19 Carrozzo M. Hepatitis C virus-associated oral lichen planus: is 
the geographical heterogeneity related to HLA-DR6?J Oral 
Pathol Med. 2005 Apr;34(4):204-8. 
20 Lawson CAet al. Analysis of the insertion/deletion related 
polymorphism within T cell antigen receptor beta variable genes 
in primary Sjogren's syndrome.Ann Rheum Dis. 2005 
Mar;64(3):468-70.
24 Campisi G. HPV DNA in clinically different variants of oral 
leukoplakia and lichen planus. Oral Surg Oral Med Oral 
Pathol Oral Radiol Endod. 2004 Dec;98(6):705-11. 
25 Xi S etal. Gene therapy for the treatment of oral squamous cell 
carcinoma. J Dent Res 2003; 82: 11-16. 
26 Baum JB. The impact of gene therapy on dentistry. JADA 
2002; 133: 35-44. 
27 Wang J et al. Predominant cell-mediated immunity in the oral 
mucosa: gene gun-based vaccination against infectious 
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28 Slavkin HC. And the next 50 years. The future of DNA 
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_oralcavity2_p.htm 
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35 .Faiez N. Genetics. DCNA. 1975. 1-150. 
36. Wise GE. Cell and molecular biology of tooth eruption. In: 
Davidowitch Z. Biologic mechanisms of tooth eruption. Ed. 
Harvard society. Boston. 1998. 1-7.
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Lewontin, Richard C.; Gelbart, William M., eds. (2000). "Genetics 
and the Organism: Introduction". An Introduction to Genetic 
Analysis (7th ed.). New York: W. H. Freeman. 
38. Book : Biotechnology & Genetic engineering (Kathy wilson 
peacock) 2010,Edi:1 : Page No. 4 (Chapter 1) 
39. D. L. Hartl and V. Orel (1992). "What Did Gregor Mendel Think 
He Discovered?".Genetics 131 (2): 245–25 
40. Zambryski, P.; Joos, H.; Genetello, C.; Leemans, J.; Montagu, M. 
V.; Schell, J. (1983). "Ti plasmid vector for the introduction of DNA 
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128

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Genetic engineering

  • 1. GENETIC ENGINEERING By, Dr. Priyanka Sharma II year MDS Department of Public Health Dentistry JSS Dental College & Hospital 1 1
  • 2. CONTENTS 1) INTRODUCTION 2) BASICS OF GENETIC ENGINEERING 3) HISTORY OF GENETIC ENGINEERING 4) GENERAL APPLICATION OF GENETIC ENGINEERING 5) GENETIC ENGINEERING IN DENTISTRY - VARIOUS TECHNIQUES OF GENETIC ENGINEERING 6) GENETIC COUNSELLING & ROLE OF DENTIST 7) SUMMARY 8) CONCLUSION 9) REFERENCES 2 2
  • 4. INTRODUCTION Genetic engineering is a part of biotechnology. Biotechnology is the use of living systems and organisms to develop or make useful products, or "any technological application that uses biological systems, living organisms or derivatives thereof, to make or modify products or processes for specific use" (UN Convention on Biological Diversity, Art. 2). 4 4
  • 5. INTRODUCTION continuation..  Biotechnology is a huge topic.  Its hard to define its exact boundaries.  Some European scientists divide the field into : 1) Red biotechnology 2) Green biotechnology  Some divides it into : 1) White 2) Blue  Biotechnology falls under many umbrellas which is basically considered as life science. Book : Biotechnology & Genetic engineering (Kathy wilson peacock) 5 2010,Edi:1 : Page No. 4 (Chapter 1) 5
  • 6. Biology & Zoology Cell biology Microbiology Molecular Biology Physiology, Ecology, Embryology Genetics, Population genetics, Epigenetics Proteonomics & Bioinformatics Book : Biotechnology & Genetic engineering 6 6
  • 7. 7 INTRODUCTION continuation.. • Genetics – science of genes, heredity and variation in living organisms. • Genetics deals with the molecular structure and function of genes, and gene behavior in context of a cell or organism (e.g. dominance and epigenetics ). • Patterns of inheritance from parent to offspring, and gene distribution, variation and change in populations = Population genetics. 7 Book : Genetics and the Organism: Introduction
  • 8. 8 INTRODUCTION continuation.. Essence Of Genetics • Chromosome • Packaged and organized chromatin, a complex of macromolecules found in cells, consisting of DNA, protein and RNA. Essence Of Genetics • DNA • A molecule that encodes the genetic instructions used in the development and functioning of all known living organisms and many viruses. Essence Of Genetics • Genetic Variation • Permanent change in the chemical structure of genes brought about by mutation, important in providing genetic material for natural selection. Essence Of Genetics • Heredity • The study of heredity in biology is called genetics, which includes the field of epigenetics. 8 Book : Genetics and the Organism: Introduction
  • 9. 9 9 U S National Library of Medicine
  • 10. 10 10 A form – 11 bp/ turn B form- 10 bp/ turn Z form- 12 bp/ turn From Lippincotts - Illustrated Biochemistry
  • 11. 11 11 Deletion Inversion Duplication Insertion Translocation
  • 12. 12
  • 13. INTRODUCTION continuation.. Various Branches of Genetics Behavioural genetics Classical genetics Developmental genetics Conservation genetics Ecological genetics Evolutionary genetics Genetic engineering & Metagenesis 13 13 Book : Genetics and the Organism: Introduction
  • 15. BASICS OF GENETIC ENGINEERING • Different terms used for genetic engineering : 1) Gene manipulation 2) Gene cloning 3) Recombinant DNA technology 4) Genetic modification 5) New genetics An Introduction to Genetic Engineering (Desmond S. T. Nicholl) Edi :3rd 2008 15 Chapter 2 . Page 3 15
  • 16.  Direct manipulation of an organism's genome using biotechnology . First isolating and copying the genetic material of interest using molecular cloning methods Generate a DNA sequence New DNA inserted in the host genome BASICS OF GENETIC ENGINEERING CONTINUATION.. An Introduction to Genetic Engineering (Desmond S. T. Nicholl) Edi :3rd 2008 Chapter 2. 16
  • 17. 17 Miller et al(2000). An Introduction to Genetic Analysis (7th ed.). 17
  • 18. 18 18 CONTENTS 1) INTRODUCTION 2) BASICS OF GENETIC ENGINEERING 4) GENETIC ENGINEERING IN DENTISTRY - VARIOUS TECHNIQUES OF GENETIC ENGINEERING 5)GENETIC COUNSELLING AND ROLE OF A DENTIST 1) SUMMARY 2) CONCLUSION 3) REFERENCES
  • 19. Genetic inheritance was first discovered by Gregor Mendel in 1865 following experiments crossing peas. • Although largely ignored for 34 years he provided the first evidence of hereditary segregation and independent assortment In 1889 Hugo de Vries came up with the name "(pan)gene" for after postulating that particles are responsible for inheritance of characteristics Term "genetics" was coined by William Bateson in 1905. 19
  • 20. In 1928 Frederick Griffith proved the existence of a "transforming principle" involved in inheritance, which Avery, MacLeod and McCarty later (1944) identified as DNA. Edward Lawrie Tatum and George Wells Beadle developed the central dogma that genes code for proteins in 1941. The double helix structure of DNA was identified by James Watson and Francis Crick in 1953. 20
  • 21. In 1970 Hamilton Smiths lab discovered restriction enzymes that allowed DNA to be cut at specific places and separated out on an electrophoresis gel. • This enabled scientists to isolate genes from an organism's genome. DNA ligases, that join broken DNA together, had been discovered earlier in 1967 and by combining the two enzymes it was possible to "cut and paste" DNA sequences to create recombinant DNA. Plasmids, discovered in 1952, became important tools for transferring information between cells and replicating DNA sequences. 21
  • 22. Frederick Sanger developed a method for sequencing DNA in 1977, greatly increasing the genetic information available to researchers Polymerase chain reaction (PCR), developed by Kary Mullis in 1983, allowed small sections of DNA to be amplified and aided identification and isolation of genetic material Artificial competence was induced in Escherichia coli in 1970 when Morton Mandel and Akiko Higa showed that it could take up bacteriophage λ after treatment with calcium chloride solution (CaCl2). 22
  • 23. Two years later, Stanley Cohen showed that CaCl2 treatment was also effective for uptake of plasmid DNA. Transformation using electroporation was developed in the late 1980s, increasing the efficiency and bacterial range In 1972 Paul Berg utilised restriction enzymes and DNA ligases to create the first recombinant DNA molecules. 23
  • 24. • Herbert Boyer and Stanley N. Cohen took Bergs work a step further and introduced recombinant DNA into an bacterial cell. In 1981 the laboratories of Frank Ruddle, Frank Constantini and Elizabeth Lacy injected purified DNA into a single-cell mouse embryo and showed transmission of the genetic material to subsequent generations. On June 19, 2013 the leaders of three research teams who originated the technology, Robert T. Fraley of Monsanto; Marc VanMontagu of Ghent University in Belgium and founder of Plant Genetic Systems and CropDesign ; and Mary-Dell Chilton ofWashington University in St. Louis and Syngenta were awarded with the World Food Prize Gordon, J.; Ruddle, F. (1981). "Integration and stable germ line transmission 24 of genes injected into mouse pronuclei". Science 214 (4526): 1244.
  • 25. The first recorded knockout mouse was created by Mario R. Capecchi, Martin Evans and Oliver Smithies in 1989. They are used to study gene function and make useful models of human diseases. In 1992 onco-mice with tumor suppressor genes knocked out were generated. Creating Knockout rats are much harder and has only been possible since 2003 Bacteria synthesising human insulin were developed in 1979, being used as a treatment for the first time in 1982 Zan, Y; Haag, J. D.; Chen, K. S.; Shepel, L. A.; Wigington, D; Wang, Y. R.; Hu, R; Lopez-Guajardo, C. C.; Brose, H. L.; Porter, K. I.; Leonard, R. A.; Hitt, A. A.; Schommer, S. L.; Elegbede, A. F.; Gould, M. N. (2003). “Production of knockout rats using ENU mutagenesis and a yeast-based screening 25 assay". Nature Biotechnology 21(6): 645–51.
  • 26. 26 In 1988 the first human antibodies were produced in plants. The first animal to synthesise transgenic proteins in their milk were mice, engineered to produce human tissue plasminogen activator. With the discovery of microRNA in 1993 came the possibility of using RNA interference to silence an organisms endogenous genes - Peng, S. (2006). "A transgenic approach for RNA interference-based genetic screening in mice". Proceedings of the National Academy of Sciences 103 (7): 2252–2220. - Vaucheret, H.; Chupeau, Y. (2011). plant miRNAs regulate gene expression in animals Cell Research 22 (1): 3–5.
  • 27. 27  Improved our understanding of genetics.  His research helped to make organ transplantations possible. Dr. Bernard Amos 27
  • 28. • His work cloned frogs laid the foundations for somatic cell nuclear transfer, the application of which led to Dolly the sheep. 28 John Gurdon 28
  • 29. Worked out the Structure of Proteins. 29 Linus Pauling 29
  • 30. 30 “The Father of Cloning” Hans Spermann 30
  • 31. 31 “The Father of Genetics” Gregor Mendel 31
  • 32. • He noticed that there is a pattern in the 4 bases: Adenine, Guanine, Cytosine and Thymine. 32 • A=T and G=C. Erwin Chargaff 32
  • 33. In 1973 created a transgenic mouse by introducing foreign DNA into its embryo, making it the world’s first transgenic animal. 33 Rudolf Jaenisch 33
  • 34. 34 34 CONTENTS 1) INTRODUCTION 2) BASICS OF GENETIC ENGINEERING 3) HISTORY OF GENETIC ENGINEERING 5) GENETIC ENGINEERING IN DENTISTRY - VARIOUS TECHNIQUES OF GENETIC ENGINEERING 6) 5)GENETIC COUNSELLING AND ROLE OF A DENTIST 7) SUMMARY 8) CONCLUSION 9) REFERENCES
  • 35. GENERAL APPLICATIONS OF GENETIC ENGINEERING ][38] 35 Eg: transgenic plants produce natural pesticide to resist to pest 35
  • 36. Engineered Mammals A monkey named ANDi, for "inserted DNA", in a picture released in January 2001. ANDi was born in October 2000 at the Oregon Health Science University after receiving an extra bit of genetic material to become the world's first genetically modified non-human primate 36 36
  • 37. 37 Cloning Dolly • Sheep A: donate body cell nucleus • Sheep B: donate an egg cell without nucleus • Sheep C: surrogate mother A B C Dolly 37 Who’s its mother?
  • 38. 38 38 CONTENTS 1) INTRODUCTION 2) BASICS OF GENETIC ENGINEERING 3) HISTORY OF GENETIC ENGINEERING 4) GENERAL APPLICATION OF GENETIC ENGINEERING 6) 5)GENETIC COUNSELLING AND ROLE OF A DENTIST 7) SUMMARY 8) CONCLUSION 9) REFERENCES
  • 39. GENETICS & ORAL HEALTH 39 39 Craniofacial & Tooth morphogenesis Agenesis GENETICS Dental caries Periodontistis Cleft lip & Palate Genetic disorders / Abnormalities Oral Cancer Malocclusion Behavorial Genetics Pharmacogenetics
  • 40. TECHNIQUES OF GENETIC ENGINEERING Tools and techniques Methods in recombinant DNA technology Genetically modified organisms Genetic treatments 40 40
  • 41. 41 TECHNIQUES OF GENETIC ENGINEERING Methods in recombinant DNA technology Genetically modified organisms Genetic treatments 41
  • 42.  DNA: The Raw Material – Heat-denatured DNA • DNA strands separate if heated to just below boiling • Exposes nucleotides • Can be slowly cooled and strands will renature 42 42
  • 43. Restriction Endo-nucleases • Enzymes that can clip strands of DNA crosswise at selected positions • Each has a known sequence of 4 to 10 pairs as its target • Can recognize and clip at palindromes 43 43
  • 44. • Can be used to cut DNA in to smaller pieces for further study or to remove and insert sequences. • Can make a blunt cut or a “sticky end” • The pieces of DNA produced are called restriction fragments. • Differences in the cutting pattern of specific restriction endonucleases give rise to restriction fragments of differing lengths-restriction fragment length polymorphisms. 44 44
  • 45. 45 45
  • 46.  Ligase and Reverse Transcriptase • Ligase: Enzyme necessary to seal sticky ends together • Reverse transcriptase: enzyme that is used when converting RNA into DNA. 46 46
  • 47. 47 47
  • 48. ANALYSIS OF DNA Gel electrophoresis Polymerase Chain Reaction 48 48
  • 49. 49 49  Gel electrophoresis: produces a readable pattern of DNA fragments
  • 50. GEL ELCTROPHORESIS • APPLICATIONS: Estimation of the size of DNA molecules following restriction enzyme digestion, e.g. in restriction mapping of cloned DNA. Analysis of PCR products, e.g. in molecular genetic diagnosis or genetic fingerprinting. 50 50
  • 51. 51 51 • Some techniques to analyze DNA and RNA are limited by the small amounts of test nucleic acid available • Polymerase chain reaction (PCR) rapidly increases the amount of DNA in a sample • So sensitive- could detect cancer from a single cell • Can replicate a target DNA from a few copies to billions in a few hours
  • 52. 52 52
  • 53. 53 53 Three Basic Steps that Cycle • Denaturation – Heat to 94°C to separate in to two strands – Cool to between 50°C and 65°C • Priming – Primers added in a concentration that favors binding to the complementary strand of test DNA – Prepares the two strands (amplicons) for synthesis • Extension – 72°C – DNA polymerase and nucleotides are added – Polymerases extend the molecule • The amplified DNA can then be analyzed
  • 54. 54 54 • Relative sizes of nucleic acids usually denoted by the number of base pairs (bp) they contain. • DNA Sequencing: Determining the Exact Genetic Code – Most detailed information comes from the actual order and types of bases- DNA sequencing – Most common technique: Sanger DNA sequence technique
  • 55. 55 55
  • 56. 56 56 • Two different nucleic acids can hybridize by uniting at their complementary regions. • Gene probes: specially formulated oligonucleotide tracers – Short stretch of DNA of a known sequence – Will base-pair with a stretch of DNA with a complementary sequence if one exists in the test sample • Can detect specific nucleotide sequences in unknown samples. • Probes carry reporter molecules (such as radioactive or luminescent labels) so they can be visualized. • Southern blot- a type of hybridization technique
  • 57. 57 57 • Southern blotting involves the transfer of DNA from a gel to a membrane, followed by detection of specific sequences by hybridization with a labeled probe. • Northern blotting, RNA is run on a gel. • Western blotting entails separation of proteins on an SDS gel, transfer to a nitrocellulose membrane, and detection proteins of interest using antibodies.
  • 58. 58 FIGURE 21: Southern blot: Identifying Specific DNA Fragments (Edward Southern--the pioneer) or gentle vacuum pressure Drying or exposure to UV light Probes: Isotope or chemical Gel is soaked in alkali buffer to denature DNA
  • 59. Northern blotting is similar to Southern blotting, but involves the transfer of RNA from a gel to a membrane RNA 59
  • 60. Northern blotting: Measuring gene activity Poly(A)+ RNA: from rat tissues Probe: G3PDH (glyceraldehyde-3-phosphate dehydrogenase) 60
  • 61. Western blotting 61 • Western blotting entails separation of proteins on an SDS gel, transfer to a nitrocellulose membrane, and detection proteins of interest using antibodies. wikipedia
  • 63. Blotting Methods 63 • Antibodies can recognize the protein of interest or an epitope tag. • epitope tag – A short peptide sequence that encodes a recognition site (“epitope”) for an antibody, typically fused to a protein of interest for detection or purification by the antibody. Human influenza hemagglutinin (HA): YPYDVPDYA The HA tag is derived from the HA-molecule corresponding to amino acids 98-106 has been extensively used as a general epitope tag in expression vectors.
  • 64. 64 64
  • 65. 65 65 • Probes applied to intact cells • Observed microscopically for the presence and location of specific genetic marker sequences • Effective way to locate genes on chromosomes
  • 66. • Gene expression array are used to detect the level of all the expressed genes in an experimental sample. • SNP arrays permit genome-wide genotyping of single nucleotide polymorphisms. =>use allele-specific oligonucledtide probe • Array comparative genome hybridization (array-CGH) allows the detection of copy number changes in any DNA sequence compared between two samples. 66
  • 67. DNA 67 Microarrays • DNA microarrays comprise known DNA sequences spotted or synthesized on a small chip. Microarrays show the levels of all the expressed genes in an experimental sample.
  • 68. 68 TECHNIQUES OF GENETIC ENGINEERING Tools and techniques Genetically modified organisms Genetic treatments 68
  • 69. 69 69 Methods in Recombinant DNA Technology • Primary intent of recombinant DNA technology- deliberately remove genetic material from one organism and combine it with that of a different organism. • Form genetic clones – Gene is selected – Excise gene – Isolate gene – Insert gene into a vector – Vector inserts DNA into a cloning host
  • 70. 70 70 Methods in Recombinant DNA Technology
  • 71. 71 71 Technical Aspects of Recombinant DNA and Gene Cloning • Strategies for obtaining genes in an isolated state – DNA removed from cells, separated into fragments, inserted into a vector, and cloned; then undergo Southern blotting and probed – Gene can be synthesized from isolated mRNA transcripts – Gene can be amplified using PCR • Once isolated, genes can be maintained in a cloning host and vector (genomic library)
  • 72. 72 72 Characteristics of Cloning Vectors • Capable of carrying a significant piece of the donor DNA • Readily accepted by the cloning host • Must have a promoter in front of the cloned gene • Vectors (such as plasmids and bacteriophages) should have three important attributes: – An origin of replication somewhere on the vector – Must accept DNA of the desired size – Contain a gene that confers drug resistance to their cloning host
  • 73. 73 73
  • 74. 74 74 Characteristics of Cloning Hosts
  • 75. 75 APPLICATIONS OF GENETIC ENGINEERING Tools and techniques Methods in recombinant DNA technology Genetically modified organisms 75
  • 76. 76 76 TREATMENT OF GENETIC DISEASE • Conventional approach • Gene Therapy
  • 77. CONVENTIONAL APPROACH 77 77 OF TREATMENT • Enzyme induction by drugs • Replacement of deficient enzymes / proteins • Replacement of deficient vitamin / co-enzyme • Replacement of deficient product • Substrate restriction in diet • Drug therapy • Drug avoidance • Replacement of diseased tissue • Removal of disease tissue
  • 78. Genomic medicine 78 use of genotypic analysis (DNA testing) to enhance quality of medical care, including 78 - presymptomatic identification - preventive intervention - selection of pharmacotherapy - design of medical care
  • 79. 79 79 GENE THERAPY Replacement of a deficient gene / gene product or correction of an abnormal gene. 2 TYPES: i. Germ-line gene therapy – changes will be passed on to subsequent generations ii. Somatic Cell gene therapy – changes will not be passed on to future generations
  • 80. Gene Therapy • Gene transfer for the purpose of treating human disease. • Transfer of new genetic material as well as manipulation of existing genetic material. (Genetic engineering) in vivo ex vivo 80
  • 81. 81
  • 82. Gene therapy Potential Uses • Treatment of recurrent disease • Adjuvant treatment • Localized distant metastatic disease 82
  • 83. Delivery systems / vectors  Non – viral - Electropolation - DEAE-dextran - Calcium phosphate - Liposomes -Naked DNA  Viruses Retroviruses Adenoviruses Adeno-associated viruses Herpes virus Gene therapy 83
  • 85. Gene therapy in dentistry 1. Bone repair • Mesenchymal stem –cell mediated gene therapy (BMPs) • Using adenoviral vector • Transfer of Platelet derivative growth factor (PDGF) • Bone sialoprotein delivery (in-vivo) 2. Salivary glands • Irreversible salivary gland dysfunction Gene therapy 85
  • 86. Gene therapy • Adenovirus encoding human AQP1 (water channel protein) – irradiated salivary gland hyposalivation. • Autoimmune diseases Sjogren syndrome : cytokines inflammation adeno-associated virus, AAV, serotype2 IL-10 transfer using recombinant AAV2 vector – salivary glands hyposalivation . 86
  • 88. • Gene therapeutics Gene therapy 88 local (exocrine) systemic (endocrine) (oral, pharyngeal, (single protein & esophageal) deficiency) Eg mucosal cadidiasis Eg hGH • Azole resistant • Recombinant adenoviral vector encoding H3
  • 89. Gene therapy • Pain Virus vector – mediated transfer of genes encoding opiate peptides peripheral & central neurons Anti-noceptive effects 89 Direct gene delivery – articular surface TMJ
  • 90. • Keratinocytes Gene therapy – systemic human aplipoprotein E, factor IX, growth hormone and IL-10 into bloodstream. • DNA vaccinations Gene therapy 90
  • 91. Gene therapy • Gene gun-based DNA vaccination against infectious diseases – oral mucosa (Wang J 2003) • Caries vaccine 91
  • 92. • Subunit Vaccines Gene therapy - synthetic peptide vaccines - recombinant vaccines • Conjugate Vaccines • Routes to Protective Responses - oral - intranasal - tonsillar - rectal 92 • Adjuvants and Delivery Systems Cholera & E coli, microcapsules, liposomes
  • 93. Human applications Gene therapy 93 - Active immunization ( 7 trials) - Passive immunization ( cow’s milk, chicken eggs, transgenic plant antibody)
  • 94. Gene therapy 94 Future Strategies of Gene Therapy in Preventing Periodontal Diseases • Gene Therapeutics-Periodontal Vaccination • Genetic Approach to Biofilm Antibiotic Resistance • An In vivo Gene Transfer by Electroporation for Alveolar Remodelling • Tight Adherence Gene for the Control of Periodontal Disease Progression • Antimicrobial Gene Therapy to Control Disease Progression 94
  • 96. • AIDS vaccine • HPV vaccine • HSV vaccine  Head & neck cancer Gene therapy 96
  • 97. Current gene therapies for cancer 97 Mechanism Goal Development stage Oncogene down-regulation therapy Delete defective gene Inhibit tumor cell growth Pre-clinical Gene addition therapy Add tumor suppressor gene Kill tumor cell Clinical trial Anti-sense RNA Abrogate genes stimulating tumor growth Inhibit tumor cell growth Clinical trial Immunothera py Enhance immune surveillance Enhance immunogenic ity of tumor cell Clinical trial
  • 98. Anti-angiogenesis therapy Transfer gene to tumor cells to block angiogenesis Inhibit tumor progression Pre-clinical Drug resistance gene therapy Transfer cytoprotectiv e gene Decrease toxicity of chemotherap y Clinical trial Tumor-cell killing viruses Introduce viruses that destroy tumor cells as part of replication cycle Kill tumor cells Pre-clinical Suicide gene therapy Transfer gene encoding pro-drug activating enzyme Kill tumor cell & enhance chemotherap y Clinical trial 98
  • 99. 99 HUMAN GENOME 99 PROJECT Objectives: i. Sequencing of human genomes ii. Mapping of human inherited diseases iii. Development of new DNA technologies iv. Development of bio-informatics v. Comparitive Genomics vi. Functional Genomics
  • 100. 100 TISSUE ENGINEERING • Tissue Engineering is a general name of biomedical fields to enable cells to enhance their proliferation, differentiation, and morphological organization for induction of tissue regeneration, resulting in regenerative medical therapy of diseases. 100
  • 101. 101 Stem cells in regenerative medicine • A stem cell is defined as a cell that can continuously produce unaltered daughters and, furthermore, has the ability to generate cells with different and more restricted properties. • These cells can either multiply (progenitors or transit amplifying cells) or be committed to terminal differentiation. • Stem cells are self-renewing and thus can generate any tissue for a lifetime. • This is a key property for a successful therapy. 101
  • 107. 107 GENETIC COUNSELLING A process of communication and education which addresses concerns relating to the development and / or transmission of a hereditary disorder. STEPS IN GENETIC COUNSELLING 107 - Diagnosis - Risk assessment - Communication - Discussion of options - Long term contact & support
  • 108. 108 108 DIAGNOSIS • History • Examination • Investigation • Only when accurate diagnosis is possible • When etiological heterogeneity is present
  • 109. 109 RISK ASSESSMENT The good side of the coin should also be emphasized 109 ARBITRARY GUIDE  1 in 10 - High risk  1 in 20 - Low risk  Intermediate values - Moderate risk
  • 110. 110 LONG TERM CONTACT & 110 SUPPORT • Counselling centers should maintain informal contact with families through a network of genetic associates • Genetics registers provide a useful means in ensuring effective contact
  • 111. 111 NEONATAL SCREENING 111 To prevent subsequent morbidity POPULATION CARRIER SCREENING The branch of medical genetics which is concerned with screening and the prevention of genetic disease on a population basis is known as community genetics.
  • 112. PRENATAL DIAGNOSIS 112 Ability to detect abnormality in an unborn child. 112 TECHNIQUES I. Non invasive - Maternal Serum screening - Ultra sound II. Invasive - Amniocentesis - Chorionic Villus Sampling
  • 113. INDICATIONS FOR 113 113 PRENATAL DIAGNOSIS • Advanced maternal age • Previous child with a genetic abnormality • Family History of - Chromosome abnormality - Single gene disorder - Neural tube defect - Other congenital structural abnormalities • Abnormalities identified in pregnancy Eg. Poor fetal growth
  • 114. 114 114 • Other High risk factors - Parental Consanguinity - Poor obstetric history Eg: Recurrent miscarriages Previous unexplained still birth - Maternal illness Eg: Poorly controlled IDDM Maternal epilepsy Treatment with Sodium Valproate
  • 115. IDENTIFY GENETIC DISEASE 1. Build the pedigree 2. Analyse 3. Risk of recurrence 4. Decision 115
  • 116. Role of dentist as genetic counselor • Oral manifestations • Correct identification • Diagnosis • Referral • Suggestion • Screening for dental diseases DNA probes 116
  • 117. Future prospects 117 • Bioengineering • Nanodentistry • Biomimetics • Molecular Epidemiology ( Variation Genetics )
  • 119. 119 Genetic engineering Enabling technology Cutting,modifying and joining DNA molecules enzymes Generation of DNA fragments Restriction enzyme DNA Ligase Joining to a vector or DNA Molecule Introduction into the host cell Selection of desired sequence Arose from Gene cloning Recombinant DNA Molecular cloning Pure science, Biotechnology, Medicine, Dentistry Legal and ethical considerations Microbial & Molecular genetics In 1972 Stanford University Is also known as Has application in But raises some was first achieved Is an That involves using Such as Requires four steps Can be used for used for
  • 120. CONCLUSION 120 • Biotechnology as a fast developing technology as well as science , has already shown its impact on different aspects of day-to-day human life such as public health pharmaceuticals, food and agriculture industries, bioenergetics and information technology. 120
  • 121. 121 • As it has potential to ensure food security, dramatically reduce hunger and malnutrition and reduce rural poverty , particularly in developing countries , Now it is very clear that biotechnology is the key technology for the 21st century and the science of the future. 121
  • 122. References 1. Colin EC. What Is Genetics? In: Colin EC. Elements of Genetics. 3rd ed. New York: McGraw Hill Book Company, Inc; 1956. p. 1-3. 2. Auden WH. History of Human Genetics. In: Motulsky V. Human Genetics, Problems and Approaches. 3rd ed. New York: Springer; 1997. p. 1-22. 3. Dhar PK. Genetics in pediatric dentistry. In: Tandon S. Textbook of Pedodontics. Ist ed. Hyderabad: Paras Medical Publisher; 2001. p. 614-622. 4. Baeudet AL. Genetics and Disease. In: Fauci, Braunwald, Isselbacher, Wilson, Martin, Hauser, Longo. Harrison’s Principles of Internal Medicine. Vol 2. 14th ed. New York: McGraw Hill Companies, Inc; 1998. p. 365-395.
  • 123. 5 Tortora GJ, Grabowski SR. Cellular level of organization. 10th ed. John wiley & sons, USA. 84-97. 6 Pashayan HM, Feingold M. Selected syndromes in pedodontics. White GE. Clinical oral pediatrics. Quintessence International. Tokyo. 1981. ed. 73-80. 7 Joerde LB, Carey JC, White RL. Genetic Variation: Its Origin and Detection. In: Joerde LB, Carey JC, White RL. Medical Genetics. Ist ed. Toronto: Mosby; 1995. p. 30-56. 8 Tencate AR et al. Development of tooth and its supporting structures. In: Nanci A. Tencate’s oral histology. 8thed. Mosby. 2003: 79-110. 9 Tandon S, Bhat S. Developing dentition and its disturbances. In: Tandon s. Textbook of pedodontics. Ed. Paras publishing . 2001. 85- 105.
  • 124. 10. Shafer. Textbook of oral pathology. 4th ed. Harcourt Asia PTE Ltd.. 1999. 11 Anderson M. Risk Assessment and Epidemiology of Dental Caries: Review of Literature. Pediatr Dent 2002; 24(5): 377- 385. 12 Sofaer JA. Host genes and dental caries. Br Dent J 1993; 175: 403-409. 13 Shuler Cf. Inherited risks for susceptibility to dental caries. J Dent Educ 2001; 65(10): 1038-1045. 14. Hart TC & Kornman KC. Genetic factors in pathogenesis of periodontitis. Periodont 2000 1997; 14: 202-15. 15 Michalowicz. Genetic & heritable risk factors in periodontal disease. J Periodontol 1994; 65: 479-88.
  • 125. 16 Cobourne MT. the complex genetics of cleft lip & palate. Euro J Ortho 2004; 26: 7-16. 17 Mossey PA et al. The heritability of malocclusion. The influence of genetics in malocclusion. Br J Ortho 1999; 26: 195-203. 18 Partridge M. Oral cancer: the genetic basis of disease. Dent Update 2000; 27: 242-248. 19 Carrozzo M. Hepatitis C virus-associated oral lichen planus: is the geographical heterogeneity related to HLA-DR6?J Oral Pathol Med. 2005 Apr;34(4):204-8. 20 Lawson CAet al. Analysis of the insertion/deletion related polymorphism within T cell antigen receptor beta variable genes in primary Sjogren's syndrome.Ann Rheum Dis. 2005 Mar;64(3):468-70.
  • 126. 24 Campisi G. HPV DNA in clinically different variants of oral leukoplakia and lichen planus. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. 2004 Dec;98(6):705-11. 25 Xi S etal. Gene therapy for the treatment of oral squamous cell carcinoma. J Dent Res 2003; 82: 11-16. 26 Baum JB. The impact of gene therapy on dentistry. JADA 2002; 133: 35-44. 27 Wang J et al. Predominant cell-mediated immunity in the oral mucosa: gene gun-based vaccination against infectious diseases. J Dermatol Sci. 2003 May;31(3):203-10. 28 Slavkin HC. And the next 50 years. The future of DNA technology in oral medicine. JPHD 1996; 56: 278-85.
  • 127. 29. webmaster@craniofacial.org.uk 30. http://uhavax.hartford.edu/bugl/hiv.htm#types 31.http://www.medschool.lsuhsc.edu/genetics_center/louisiana/article _oralcavity2_p.htm 32 . webmaster@craniofacial.org.uk 33. http://uhavax.hartford.edu/bug/hiv.htm#types 34 .www.cancerquest.org/index.cfm? 35 .Faiez N. Genetics. DCNA. 1975. 1-150. 36. Wise GE. Cell and molecular biology of tooth eruption. In: Davidowitch Z. Biologic mechanisms of tooth eruption. Ed. Harvard society. Boston. 1998. 1-7.
  • 128. 37. Griffiths, Anthony J. F.; Miller, Jeffrey H.; Suzuki, David T.; Lewontin, Richard C.; Gelbart, William M., eds. (2000). "Genetics and the Organism: Introduction". An Introduction to Genetic Analysis (7th ed.). New York: W. H. Freeman. 38. Book : Biotechnology & Genetic engineering (Kathy wilson peacock) 2010,Edi:1 : Page No. 4 (Chapter 1) 39. D. L. Hartl and V. Orel (1992). "What Did Gregor Mendel Think He Discovered?".Genetics 131 (2): 245–25 40. Zambryski, P.; Joos, H.; Genetello, C.; Leemans, J.; Montagu, M. V.; Schell, J. (1983). "Ti plasmid vector for the introduction of DNA into plant cells without alteration of their normal regeneration capacity". The EMBO Journal 2 (12): 2143–2150. 128

Hinweis der Redaktion

  1. In 1907 a bacterium that caused plant tumors, Agrobacterium tumefaciens, was discovered and in the early 1970s the tumor inducing agent was found to be a DNA plasmid called the Ti plasmid By removing the genes in the plasmid that caused the tumor and adding in novel genes researchers were able to infect plants with A. tumefaciens and let the bacteria insert their chosen DNA into the genomes of the plants
  2. By removing the genes in the plasmid that caused the tumor and adding in novel genes researchers were able to infect plants with A. tumefaciens and let the bacteria insert their chosen DNA into the genomes of the plants
  3. Genetic engineering has been used to produce proteins derived from humans and other sources in organisms that normally cannot synthesise these proteins. Bacteria synthesising human insulin were developed in 1979, being used as a treatment for the first time in 1982.[48] In 1988 the first human antibodies were produced in plants.[In 1997avidin, an egg protein, was expressed in a plant with the intention of extracting, purifying and selling it.[49] The first transgenic livestock were produced in 1985,[50] by micro injecting foreign DNA into rabbits, sheep and pigs eggs.[51] The first animal to synthesise transgenic proteins in their milk were mice,[52] engineered to produce human tissue plasminogen activator.[53] This technology has now been applied to other sheep, pigs, cows and other livestock.[52] With the discovery of microRNA in 1993 came the possibility of using RNA interference to silence an organisms endogenous genes. Craig C. Mello and Andrew Fire discovered a silencing effect in 1998 through injection of double stranded RNA into C. Elegans . Using genetic engineering the microRNA can be expressed long term, permanently silencing the target genes. In 2002 stable gene silencing was induced in mammalian cells,[and in 2005 this was accomplished in a whole mouse.[In 2007 papers were released where insect and nematode genes that formed microRNA were put into plants, resulting in gene silencing of the pest when they ingested the transgenic plant.[58]
  4. The development of genetic engineering technology led to concerns in the scientific community about potential risks. The development of a regulatory framework concerning genetic engineering began in 1975, at Asilomar, California. The Asilomar meeting recommended a set of guidelines regarding the cautious use of recombinant technology and any products resulting from that technology.[30] The Asilomar recommendations were voluntary, but in 1976 the US National Institute of Health (NIH) formed a recombinant DNA advisory committee.[31] This was followed by other regulatory offices (the United States Department of Agriculture (USDA), Environmental Protection Agency (EPA) and Food and Drug Administration (FDA)), effectively making all recombinant DNA research tightly regulated in the USA.[In 1982 the Organization for Economic Co-operation and Development (OECD) released a report into the potential hazards of releasing genetically modified organisms into the environment as the first transgenic plants were being developed.[33] As the technology improved and genetically organisms moved from model organisms to potential commercial products the USA established a committee at theOffice of Science and Technology (OSTP) to develop mechanisms to regulate the developing technology.[32] In 1986 the OSTP assigned regulatory approval of genetically modified plants in the US to the USDA, FDA and EPA.[34] In the late 1980s and early 1990s, guidance on assessing the safety of genetically engineered plants and food emerged from organizations including the FAO and WHO.[35][36][37 WHO (1987): Principles for the Safety Assessment of Food Additives and Contaminants in Food, Environmental Health Criteria 70. World Health Organization, Geneva Jump up^ WHO (1991): Strategies for assessing the safety of foods produced by biotechnology, Report of a Joint FAO/WHO Consultation. World Health Organization, Geneva Jump up^ WHO (1993): Health aspects of marker genes in genetically modified plants, Report of a WHO Workshop. World Health Organization, Geneva Jump up^ WHO (1995): Application of the principle of substantial equivalence to the safety evaluation of foods or food components from plants derived by modern biotechnology, Report of a WHO Workshop. World Health Organization, Geneva n 1976 Genentech, the first genetic engineering company was founded by Herbert Boyer and Robert Swanson and a year later and the company produced a human protein (somatostatin) in E.coli. Genentech announced the production of genetically engineered human insulin in 1978.[59] In 1980, the U.S. Supreme Court in the Diamond v. Chakrabarty case ruled that genetically altered life could be patented.[60] The insulin produced by bacteria, branded humulin, was approved for release by the Food and Drug Administration in 1982.[61] In 1983, a biotech company, Advanced Genetic Sciences (AGS) applied for U.S. government authorization to perform field tests with the ice-minus strain of P. syringae to protect crops from frost, but environmental groups and protestors delayed the field tests for four years with legal challenges.[62] In 1987, the ice-minus strain of P. syringae became the first genetically modified organism (GMO) to be released into the environment[63] when a strawberry field and a potato field in California were sprayed with it.[64] Both test fields were attacked by activist groups the night before the tests occurred: "The world's first trial site attracted the world's first field trasher".[63] The first field trials of genetically engineered plants occurred in France and the USA in 1986, tobacco plants were engineered to be resistant to herbicides.[65] The People’s Republic of China was the first country to commercialize transgenic plants, introducing a virus-resistant tobacco in 1992.[66] In 1994 Calgene attained approval to commercially release the Flavr Savr tomato, a tomato engineered to have a longer shelf life.[67] In 1994, the European Union approved tobacco engineered to be resistant to the herbicidebromoxynil, making it the first genetically engineered crop commercialized in Europe.[68] In 1995, Bt Potato was approved safe by the Environmental Protection Agency, after having been approved by the FDA, making it the first pesticide producing crop to be approved in the USA.[69] By 2010, according to the annual ISAAA brief: "While 29 countries planted commercialized biotech crops in 2010, an additional 31 countries, totaling 60 have granted regulatory approvals for biotech crops for import for food and feed use and for release into the environment since 1996.... A total of 1,045 approvals have been granted for 196 events (NB: an "event" is a specific genetic modification in a specific species) for 25 crops. Thus, biotech crops are accepted for import for food and feed use and for release into the environment in 60 countries, including major food importing countries like Japan, which do not plant biotech crops. Of the 60 countries that have granted approvals for biotech crops, USA tops the list followed by Japan, Canada, Mexico, South Korea, Australia, the Philippines, New Zealand, the European Union, and Taiwan. Maize has the most events approved (65) followed by cotton (39), canola (15), potato and soybean (14 each). The event that has received regulatory approval in most countries is herbicide tolerant soybean event GTS-40-3-2 with 25 approvals (EU=27 counted as 1 approval only), followed by insect resistant maize MON810 with 23 approvals, herbicide tolerant maize NK603 with 22 approvals each, and insect resistant cotton (MON1445) with 14 approvals worldwide."
  5. strand that contains the same series of nitrogenous bases regardless from which direction the strand is analyzed.