Research Objects for e-Laboratories

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David Newman

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Research Objects (ROs) for e-Laboratories David R Newman W3C HCLS Scientific Discourse Concall 7th March 2011

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],http://blogs.nature.com/eresearch/2010/11/replacing_the_paper_the_twelve_rs_of_the_e-research_record.html The Twelve Rs of the e-Research

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Types of Research Object

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Principles, Features and Behaviours of ROs

[object Object],[object Object],[object Object],[object Object],[object Object],Reuse, Recycling, Repurposing Courtesy of David De Roure

Results Logs Results Metadata Paper Slides Workflow 16 Workflow 13 Common pathways QTL Paul’s Pack Courtesy of David De Roure

Results Logs Results Metadata Paper Slides Feeds into produces Included in produces Published in produces Included in Included in Included in Published in Workflow 16 Workflow 13 Common pathways QTL Paul’s Research Object Courtesy of David De Roure

[object Object],[object Object],[object Object],[object Object],[object Object],Building Research Objects Using OAI-ORE

OAI-ORE Research Object Upper Model (ROUM) Research Object Domain Schema (RODS) Research Object Architecture Taverna SysMo Biocatalogue Obesity e-Lab Life Science Entities Scientific Discourse Curation Provenance OPM SWAN Annotation Ontology OBI

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],The role for myExperiment

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Modelling ROs in myExperiment’s ontology

[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment and RODSs

[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Next Steps

[object Object],[object Object],[object Object],A myExperiment Pack with Relationships

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Research Objects for e-Laboratories

1. Research Objects (ROs) for e-Laboratories David R Newman W3C HCLS Scientific Discourse Concall 7th March 2011

7. Results Logs Results Metadata Paper Slides Workflow 16 Workflow 13 Common pathways QTL Paul’s Pack Courtesy of David De Roure

8. Results Logs Results Metadata Paper Slides Feeds into produces Included in produces Published in produces Included in Included in Included in Published in Workflow 16 Workflow 13 Common pathways QTL Paul’s Research Object Courtesy of David De Roure

10. OAI-ORE Research Object Upper Model (ROUM) Research Object Domain Schema (RODS) Research Object Architecture Taverna SysMo Biocatalogue Obesity e-Lab Life Science Entities Scientific Discourse Curation Provenance OPM SWAN Annotation Ontology OBI

11.

12.

13. Pack vs Full Research Object

14. Representing Pack Relationships

15.

16.

17. A myExperiment Pack with Relationships

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19.

Research Objects for e-Laboratories

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