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Towards „RadSpeech“
Prototyping Semantic Dialogue Systems
for Radiologists

An Introduction




Daniel Sonntag, DFKI
10/2010


Daniel Sonntag                          |1
Outline

    »      Clinical Care and Research

    »      New Radiology Interaction Systems

    »      Usability and Interaction Design Issues

    »      Speech Dialogue System and Evaluation

    »      Conclusions


Daniel Sonntag                                       |2
Clinical Care and Research




Daniel Sonntag                                |3
Digitized Patient Information


    »Clinical care and research increasingly rely on
     digitized patient information. There is a growing
     need to store and organize all patient data,
     including health records, laboratory reports, and
     medical images.
    »Effective retrieval of images builds on the semantic
     annotation of image contents.
    »But little or no help is given when it comes to the
     interpretation of what is being displayed.
    »Semantic annotations should provide the necessary
     image information.
    »A semantic HCI / dialogue shell should be used to
     ask questions about the image annotations.

Daniel Sonntag                                          |4
New Radiology Interaction
Requirements


    »The main task in diagnostic
     radiology is to interpret
     medical images from various
     modalities like computed
     tomography (CT) or
     magnetic resonance (MR)
     imaging.
    »Modern radiology
     information systems            Traditional desktop-
     automatically route images     based 2D/3D image
     to the assigned radiologist      examination tool
     immediately after the         (volumes of a patient’s
     acquisition of the images.     chest and abdomen)


Daniel Sonntag                                          |5
Image Analysis in
Biomedicine MEDICO




                 Retrieval and examination of 2D picture series
Daniel Sonntag                                                    |6
Problems

    The process of reading the images is highly efficient when using
     a traditional desktop-based 2D/3D examination tool.

    » The problem is that the radiologist cannot directly create a
      structured report while scanning the images.
    » In this eyes-busy setting, he can only dictate the finding to a
      tape-recorder.
    » After the reading process, he can replay the dictation to
      manually fill out a patient’s finding form.
    » Another possibility is to have a clinical assistant complete the
      form. But since the radiologist has to check the form again,
      this task delegation does not save much time which is spent
      on one report.



Daniel Sonntag                                                           |7
Solutions

    Strive to overcome the limitations of structured reporting:
         » Content-based information should be automatically extracted
           from medical images.
         » In combination with dialogue-based radiology image reporting,
           radiologists should no longer fill out forms but focus on the
           images while either dictating the image annotations of the reports
           to the dialogue system or refining existing annotations.


    New: Our system integrates manual image annotation in the
     reporting workflow of radiologists while using a speech-based
     dialogue system:
         » multimodal interaction in a real dialogue scenario
         » deal with ontological image annotations, and
         » directly annotate image regions according to the ontological
           image model

Daniel Sonntag                                                             |8
New Radiology Interaction
                     Systems




Daniel Sonntag                           |9
Radiology Environment



                          “This lymph node
                          here, annotate
                          Hodgkin-Lymph.”


      Desktop->   Touchscreen




                        Patient Finding      CT/MR Imaging
                        Workstation          Center




Daniel Sonntag                                               | 10
Usability and Interaction
                       Design issues




Daniel Sonntag                               | 11
Usability Methods

    » Usability guidelines for the prototype development and
      implementation stage consider five different planes. Every plane
      has its own issues that must be considered. From abstract to
      concrete, these are (1) the strategic plane, (2) the scope plane, (3)
      the structure plane, (4) the skeleton plane, and (5) the surface
      plane.
    » A cognitive walkthrough starts with a task analysis that specifies
      the sequence of steps or actions a user requires to accomplish a
      task, and the system’s responses to those actions.
    » Simply visiting the users to observe them work is an extremely
      important usability method with benefits both for task analysis and
      for the collection of information about the true field usability of
      installed systems.
    » Hierarchical Task Analysis (HTA) breaks down the steps of a
      radiologist’s task as performed by a medical user and describes the
      task as seen at various levels of detail. Each step can be decomposed
      into lower-level sub-steps, thus forming a hierarchy of sub-tasks
      (this corresponds to the information retrieval and annotation stages
      already explained).



Daniel Sonntag                                                           | 12
Speech Dialogue System and
                  Evaluation




Daniel Sonntag                         | 13
Speech Dialogue


    »Consider a radiologist (R) at his daily work of the
     clinical reporting process with the speech-based
     semantic dialogue shell (S)
    »The potential application scenario includes a
     radiologist which treats a lymphoma patient; the
     patient visits the doctor after chemotherapy for a
     follow-up CT examination.
    »The speech-based dialogue begins with the
     selection of a patient record using speech.




Daniel Sonntag                                             | 14
Speech Dialogue

                  » R: “Show me my patient
                    records, lymphoma cases,
                    for this week.”
                  » S: Shows corresponding
                    patient records.




Daniel Sonntag                                 | 15
Speech Dialogue

                  » R: Switches to the first image
                    and clicks on a specific region
                    (automatically determined).
                  » R: “Open further images,
                    internal organs: lungs, liver,
                    then spleen and colon of this
                    patient (+ pointing gesture on
                    highlighted region).”
                  » S: The system rearranges the
                    semantic interface elements
                    (SIEs) to signalize that the
                    dialogue focus is on regions.
                  » R: “This lymph node here (+
                    pointing gesture), annotate
                    Hodgkin-Lymphom.”
                  » S: Annotates the image with
                    RDF annotations (cf. highlighted
                    pathological part) and displays a
                    label for the recognized ICD-10
                    term.


Daniel Sonntag                                     | 16
Speech Dialogue

                                           » R: “Also get the findings of
                                             this patient.” The complete
        Patient 1              Patient 2     overview is again illustrated.

                                           » After saying “This lymph
                                             node here (+ pointing
                                             gesture), annotate Hodgkin-
                                             Lymphom,” the radiologist
                                             gets direct feedback of the
                                             annotation step which
                                             delivers the RadLex term
                    Findings                 annotation




Daniel Sonntag                                                            | 17
Conclusions




Daniel Sonntag                 | 18
Towards “RadSpeech”

    » We described the design and implementation of a semantic
      dialogue system for radiologists.
    » We discussed the clinical workflow and interaction
      requirements and focused on the design and implementation
      of the multimodal user interface for image search and image
      region annotation and its implementation while using the
      speech-based dialogue system.
    » The overall semantic search architecture
      (http://www.theseus-
      programm.de/anwendungsszenarien/medico/) which includes
      our semantic dialogue shell will now be tested in a clinical
      environment (-> RadSpeech).
    » Furthermore, the question of how to integrate semantic image
      knowledge with other types of data, such as textual patient
      data, is paramount.

Daniel Sonntag                                                   | 19
Thank you!



    » Thanks go also out to Robert Nesselrath, Yajing Zang, Günter
      Neumann, Matthieu Deru, Simon Bergweiler, Gerhard
      Sonnenberg, Norbert Reithinger, Gerd Herzog, Alassane Ndiaye,
      Tilman Becker, Norbert Pfleger, Alexander Pfalzgraf, Jan Schehl,
      Jochen Steigner, Colette Weihrauch and Alexander Cavallaro for
      the implementation and evaluation of the dialogue infrastructure.

Daniel Sonntag                                                            | 20

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Towards RadSpeech - A speech dialogue system for radiologists

  • 1. Towards „RadSpeech“ Prototyping Semantic Dialogue Systems for Radiologists An Introduction Daniel Sonntag, DFKI 10/2010 Daniel Sonntag |1
  • 2. Outline » Clinical Care and Research » New Radiology Interaction Systems » Usability and Interaction Design Issues » Speech Dialogue System and Evaluation » Conclusions Daniel Sonntag |2
  • 3. Clinical Care and Research Daniel Sonntag |3
  • 4. Digitized Patient Information »Clinical care and research increasingly rely on digitized patient information. There is a growing need to store and organize all patient data, including health records, laboratory reports, and medical images. »Effective retrieval of images builds on the semantic annotation of image contents. »But little or no help is given when it comes to the interpretation of what is being displayed. »Semantic annotations should provide the necessary image information. »A semantic HCI / dialogue shell should be used to ask questions about the image annotations. Daniel Sonntag |4
  • 5. New Radiology Interaction Requirements »The main task in diagnostic radiology is to interpret medical images from various modalities like computed tomography (CT) or magnetic resonance (MR) imaging. »Modern radiology information systems Traditional desktop- automatically route images based 2D/3D image to the assigned radiologist examination tool immediately after the (volumes of a patient’s acquisition of the images. chest and abdomen) Daniel Sonntag |5
  • 6. Image Analysis in Biomedicine MEDICO Retrieval and examination of 2D picture series Daniel Sonntag |6
  • 7. Problems The process of reading the images is highly efficient when using a traditional desktop-based 2D/3D examination tool. » The problem is that the radiologist cannot directly create a structured report while scanning the images. » In this eyes-busy setting, he can only dictate the finding to a tape-recorder. » After the reading process, he can replay the dictation to manually fill out a patient’s finding form. » Another possibility is to have a clinical assistant complete the form. But since the radiologist has to check the form again, this task delegation does not save much time which is spent on one report. Daniel Sonntag |7
  • 8. Solutions Strive to overcome the limitations of structured reporting: » Content-based information should be automatically extracted from medical images. » In combination with dialogue-based radiology image reporting, radiologists should no longer fill out forms but focus on the images while either dictating the image annotations of the reports to the dialogue system or refining existing annotations. New: Our system integrates manual image annotation in the reporting workflow of radiologists while using a speech-based dialogue system: » multimodal interaction in a real dialogue scenario » deal with ontological image annotations, and » directly annotate image regions according to the ontological image model Daniel Sonntag |8
  • 9. New Radiology Interaction Systems Daniel Sonntag |9
  • 10. Radiology Environment “This lymph node here, annotate Hodgkin-Lymph.” Desktop-> Touchscreen Patient Finding CT/MR Imaging Workstation Center Daniel Sonntag | 10
  • 11. Usability and Interaction Design issues Daniel Sonntag | 11
  • 12. Usability Methods » Usability guidelines for the prototype development and implementation stage consider five different planes. Every plane has its own issues that must be considered. From abstract to concrete, these are (1) the strategic plane, (2) the scope plane, (3) the structure plane, (4) the skeleton plane, and (5) the surface plane. » A cognitive walkthrough starts with a task analysis that specifies the sequence of steps or actions a user requires to accomplish a task, and the system’s responses to those actions. » Simply visiting the users to observe them work is an extremely important usability method with benefits both for task analysis and for the collection of information about the true field usability of installed systems. » Hierarchical Task Analysis (HTA) breaks down the steps of a radiologist’s task as performed by a medical user and describes the task as seen at various levels of detail. Each step can be decomposed into lower-level sub-steps, thus forming a hierarchy of sub-tasks (this corresponds to the information retrieval and annotation stages already explained). Daniel Sonntag | 12
  • 13. Speech Dialogue System and Evaluation Daniel Sonntag | 13
  • 14. Speech Dialogue »Consider a radiologist (R) at his daily work of the clinical reporting process with the speech-based semantic dialogue shell (S) »The potential application scenario includes a radiologist which treats a lymphoma patient; the patient visits the doctor after chemotherapy for a follow-up CT examination. »The speech-based dialogue begins with the selection of a patient record using speech. Daniel Sonntag | 14
  • 15. Speech Dialogue » R: “Show me my patient records, lymphoma cases, for this week.” » S: Shows corresponding patient records. Daniel Sonntag | 15
  • 16. Speech Dialogue » R: Switches to the first image and clicks on a specific region (automatically determined). » R: “Open further images, internal organs: lungs, liver, then spleen and colon of this patient (+ pointing gesture on highlighted region).” » S: The system rearranges the semantic interface elements (SIEs) to signalize that the dialogue focus is on regions. » R: “This lymph node here (+ pointing gesture), annotate Hodgkin-Lymphom.” » S: Annotates the image with RDF annotations (cf. highlighted pathological part) and displays a label for the recognized ICD-10 term. Daniel Sonntag | 16
  • 17. Speech Dialogue » R: “Also get the findings of this patient.” The complete Patient 1 Patient 2 overview is again illustrated. » After saying “This lymph node here (+ pointing gesture), annotate Hodgkin- Lymphom,” the radiologist gets direct feedback of the annotation step which delivers the RadLex term Findings annotation Daniel Sonntag | 17
  • 19. Towards “RadSpeech” » We described the design and implementation of a semantic dialogue system for radiologists. » We discussed the clinical workflow and interaction requirements and focused on the design and implementation of the multimodal user interface for image search and image region annotation and its implementation while using the speech-based dialogue system. » The overall semantic search architecture (http://www.theseus- programm.de/anwendungsszenarien/medico/) which includes our semantic dialogue shell will now be tested in a clinical environment (-> RadSpeech). » Furthermore, the question of how to integrate semantic image knowledge with other types of data, such as textual patient data, is paramount. Daniel Sonntag | 19
  • 20. Thank you! » Thanks go also out to Robert Nesselrath, Yajing Zang, Günter Neumann, Matthieu Deru, Simon Bergweiler, Gerhard Sonnenberg, Norbert Reithinger, Gerd Herzog, Alassane Ndiaye, Tilman Becker, Norbert Pfleger, Alexander Pfalzgraf, Jan Schehl, Jochen Steigner, Colette Weihrauch and Alexander Cavallaro for the implementation and evaluation of the dialogue infrastructure. Daniel Sonntag | 20