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Merging the Worlds of Art and Science 
IFLA Section on Science & Technology 
August 19,2014
Trish Rose-Sandler 
Center for Biodiversity Informatics, 
Missouri Botanical Garden, St. Louis, MO, USA 
Nancy E. Gwinn 
Smithsonian Libraries, 
Washington, DC, USA 
Constance Rinaldo 
Ernst Mayr Library, Museum of Comparative 
Zoology, Harvard University, 
Cambridge, MA, USA
What is Biodiversity Content?
Digital Repository of 
Books 
Field Notebooks 
Journals 
• Extensive 
• Open 
• Global 
• Linked
What is the Biodiversity Heritage Library? 
Digital Library 
78,947 
Titles 
141,770 
Volumes 
44,275,666 
Pages
• American Museum of Natural History Library 
• California Academy of Sciences Library 
• Cornell University Library 
• Harvard University Botany Library 
• Ernst Mayr Library of the Museum of Comparative Zoology 
• Library of Congress 
• Marine Biological Laboratory Library 
• Missouri Botanical Garden Library 
• Natural History Museum, London Library 
• The New York Botanical Garden Library 
• Royal Botanic Garden, Kew, Library 
• Smithsonian Libraries 
• Washington University at St. Louis Library 
• University of Illinois Library 
• United States Geological Survey Libraries 
15 
MEMBERS 
4 
AFFILIATES 
BHL Central 
• Academy of Natural Sciences Library 
• Chicago Botanical Garden Library 
• The Field Museum Library 
• Los Angeles County Natural History Museum Library
Global Partners 
Europe 
China 
Australia 
Egypt 
Brazil 
Africa 
Singapore
BHL = Libraries + Technology + Science 
of 
animals, plants, nature in 
general (Taxonomic literature) 
• Type in a taxon name and find 
in 
the text corpus. 
• Systematic biology is for 
scientists—the taxonomic 
impediment is resolved.
BHL Book Viewer
Challenges 
Millions of natural history illustrations 
Very few have metadata that 
describe their content or where they 
are in the book
BHL and Flickr—90,000 Images 
Only pretty 
pictures 
Still too manual 
Many 
illustrations not 
included
o Full title— 
o Grant given to in St. Louis, Missouri 
o Funded by U.S. 
o Runs 
Art of Life?
Goals/Objectives 
o Define for natural history illustrations 
o Build algorithms to of illustrations 
o Enhance existing tools to 
adding descriptive metadata 
into BHL and images and metadata 
more widely
How to Identify Illustrations? 
Algorithms to automate 
identification of images tested: 
Picture blocks 87-88% effective 
Contrast 87-88% effective 
Color ineffective 
Compression ineffective
Web Application 
For analyzing & 
visualizing algorithm 
results
Basic Workflow
Macaw 
An interface for 
classifying pages 
identified by algorithms
Crowdsourcing 
Flickr 
tagging 
Wikimedia 
Commons 
apply schema 
For adding description of illustrations
Describing Natural History Illustrations 
Schema = VRA Core with 
elements from Darwin Core
Art of Life Status 
o Running algorithms 
o 1.5 million pages processed 
o 300,000 pages with images 
o Estimate will be 15% of corpus—pages with 
images 
results—78,000 pages so far 
o Testing to Wikimedia Commons 
o Testing from tool 
o BHL architecture modified and ready to 
newly created metadata
o Images serve 
o Scientists 
o Artists 
o Historians 
o Teachers 
Benefits 
o Rich content 
o If specimens are gone, may be to 
document a species 
algorithms and analysis tools on github 
github.com/IMAmuseum/artoflife 
tool (Macaw) on github 
github.com/cajunjoel/macaw-neh
Questions? 
For more information: 
Trish Rose-Sandler, Principal Investigator 
trish.rose-sandler@mobot.org 
biodivlib.wikispaces.com/Art+of+Life

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Ifla art of life presentation final

  • 1. Merging the Worlds of Art and Science IFLA Section on Science & Technology August 19,2014
  • 2. Trish Rose-Sandler Center for Biodiversity Informatics, Missouri Botanical Garden, St. Louis, MO, USA Nancy E. Gwinn Smithsonian Libraries, Washington, DC, USA Constance Rinaldo Ernst Mayr Library, Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
  • 4. Digital Repository of Books Field Notebooks Journals • Extensive • Open • Global • Linked
  • 5. What is the Biodiversity Heritage Library? Digital Library 78,947 Titles 141,770 Volumes 44,275,666 Pages
  • 6. • American Museum of Natural History Library • California Academy of Sciences Library • Cornell University Library • Harvard University Botany Library • Ernst Mayr Library of the Museum of Comparative Zoology • Library of Congress • Marine Biological Laboratory Library • Missouri Botanical Garden Library • Natural History Museum, London Library • The New York Botanical Garden Library • Royal Botanic Garden, Kew, Library • Smithsonian Libraries • Washington University at St. Louis Library • University of Illinois Library • United States Geological Survey Libraries 15 MEMBERS 4 AFFILIATES BHL Central • Academy of Natural Sciences Library • Chicago Botanical Garden Library • The Field Museum Library • Los Angeles County Natural History Museum Library
  • 7. Global Partners Europe China Australia Egypt Brazil Africa Singapore
  • 8. BHL = Libraries + Technology + Science of animals, plants, nature in general (Taxonomic literature) • Type in a taxon name and find in the text corpus. • Systematic biology is for scientists—the taxonomic impediment is resolved.
  • 9.
  • 11. Challenges Millions of natural history illustrations Very few have metadata that describe their content or where they are in the book
  • 12. BHL and Flickr—90,000 Images Only pretty pictures Still too manual Many illustrations not included
  • 13. o Full title— o Grant given to in St. Louis, Missouri o Funded by U.S. o Runs Art of Life?
  • 14. Goals/Objectives o Define for natural history illustrations o Build algorithms to of illustrations o Enhance existing tools to adding descriptive metadata into BHL and images and metadata more widely
  • 15. How to Identify Illustrations? Algorithms to automate identification of images tested: Picture blocks 87-88% effective Contrast 87-88% effective Color ineffective Compression ineffective
  • 16. Web Application For analyzing & visualizing algorithm results
  • 18. Macaw An interface for classifying pages identified by algorithms
  • 19. Crowdsourcing Flickr tagging Wikimedia Commons apply schema For adding description of illustrations
  • 20. Describing Natural History Illustrations Schema = VRA Core with elements from Darwin Core
  • 21. Art of Life Status o Running algorithms o 1.5 million pages processed o 300,000 pages with images o Estimate will be 15% of corpus—pages with images results—78,000 pages so far o Testing to Wikimedia Commons o Testing from tool o BHL architecture modified and ready to newly created metadata
  • 22. o Images serve o Scientists o Artists o Historians o Teachers Benefits o Rich content o If specimens are gone, may be to document a species algorithms and analysis tools on github github.com/IMAmuseum/artoflife tool (Macaw) on github github.com/cajunjoel/macaw-neh
  • 23.
  • 24. Questions? For more information: Trish Rose-Sandler, Principal Investigator trish.rose-sandler@mobot.org biodivlib.wikispaces.com/Art+of+Life

Hinweis der Redaktion

  1. BHL is An extensive repository of biodiversity literature (44 million pages +). open access – all content is either public domain or licensed under Creative Commons. Global in content coverage and partners links to other regional and global initiatives
  2. All content is served from Internet Archive and at specialized BHL portal In portal Can search by keyword, scientific name, or by article Browse by Title, author, date or collection
  3. BHL is a VIRTUAL ORGANIZATION BHL Central is formed by 19 organizations in US and UK: Global BHL includes BHL central and the other countries on the slide Membership subscriptions support operational/administration/technical work.
  4. Primarily supports taxonomists in biodiversity But ...is used by many disciplines other than science particularly the illustrations. Brief explanation of what is taxonomy in context of natural history. Explain specifically the taxonomic impediment: Years of work can be compressed.
  5. BHL Book viewer showing a scientific name search result Through web services we can match species name thesauri with content in BHL. Then link out to related sites such as the Encyclopedia of Life
  6. 5 primary objectives Define an appropriate metadata schema for natural history illustrations Build algorithms to automate identification of illustrations Enhance existing tools to classify illustrations (e.g. drawing vs map) Crowdsource further descriptions (e.g. species, illustrator) Integrate metadata into BHL portal and share images and metadata more widely
  7. Indianapolis Museum of Art developed algorithms Tested four but used only 2 due to effectiveness
  8. Django web application for analyzing and visualizing the algorithm results
  9. Developed Tool for classifying the illustrations Developed at Smithsonian Libraries Modified a tool called Macaw used for adding page level metadata to books
  10. On the left is Flickr where BHL can share illustrations and users can tag them On right is Wikimedia Commons where BHL can share illustrations and users can describe them using the Art of Life schema
  11. Example of illustration described using Art of Life schema