SlideShare ist ein Scribd-Unternehmen logo
1 von 7
Downloaden Sie, um offline zu lesen
Introducing BioLib
C and C++ libraries for BioPerl, BioJAVA,
        BioPython, BioRuby. . .
              Pjotr Prins (pjotr.prins at wur.nl)


        Bioinformatics Open Source Conference 2008




                                                     Introducing BioLib – p. 1
The problem

  No Bio* language is clearly superior - all have
  strengths and weaknesses
  No language clearly dominates, at this point

Meanwhile:
  Limited pool of talented and contributing
  programmers (50 globally?)
  Duplication of effort in all Bio* efforts


                                              Introducing BioLib – p. 2
Solutions

Option 1: Ignore and continue
(or head-less chicken scenario)




Option 2: Prevent duplication of effort
(BioLib initiative; Biohackthon Tokyo, 2008)

                                               Introducing BioLib – p. 3
Prins Bio Lib Bosc2008
Prins Bio Lib Bosc2008
Prins Bio Lib Bosc2008
Prins Bio Lib Bosc2008

Weitere ähnliche Inhalte

Ähnlich wie Prins Bio Lib Bosc2008

Biopython Project Update 2013
Biopython Project Update 2013Biopython Project Update 2013
Biopython Project Update 2013pjacock
 
Biopython Project Update (BOSC 2012)
Biopython Project Update (BOSC 2012)Biopython Project Update (BOSC 2012)
Biopython Project Update (BOSC 2012)Eric Talevich
 
E Talevich - Biopython project-update
E Talevich - Biopython project-updateE Talevich - Biopython project-update
E Talevich - Biopython project-updateJan Aerts
 
BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)Mark Jensen
 
BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)Mark Jensen
 
Maker - EDU: Learning Biotech by doing in a DiyBio Space
Maker - EDU: Learning Biotech by doing in a DiyBio SpaceMaker - EDU: Learning Biotech by doing in a DiyBio Space
Maker - EDU: Learning Biotech by doing in a DiyBio Spaceron shigeta
 
Python 101 For The Net Developer
Python 101 For The Net DeveloperPython 101 For The Net Developer
Python 101 For The Net DeveloperSarah Dutkiewicz
 

Ähnlich wie Prins Bio Lib Bosc2008 (9)

Talk6 biopython bosc2011
Talk6 biopython bosc2011Talk6 biopython bosc2011
Talk6 biopython bosc2011
 
Biopython Project Update 2013
Biopython Project Update 2013Biopython Project Update 2013
Biopython Project Update 2013
 
Biopython Project Update (BOSC 2012)
Biopython Project Update (BOSC 2012)Biopython Project Update (BOSC 2012)
Biopython Project Update (BOSC 2012)
 
E Talevich - Biopython project-update
E Talevich - Biopython project-updateE Talevich - Biopython project-update
E Talevich - Biopython project-update
 
BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)
 
BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)BioPerl (Poster T02, ISMB 2010)
BioPerl (Poster T02, ISMB 2010)
 
Python
PythonPython
Python
 
Maker - EDU: Learning Biotech by doing in a DiyBio Space
Maker - EDU: Learning Biotech by doing in a DiyBio SpaceMaker - EDU: Learning Biotech by doing in a DiyBio Space
Maker - EDU: Learning Biotech by doing in a DiyBio Space
 
Python 101 For The Net Developer
Python 101 For The Net DeveloperPython 101 For The Net Developer
Python 101 For The Net Developer
 

Mehr von bosc_2008

Lee Apollo Bosc2008
Lee Apollo Bosc2008Lee Apollo Bosc2008
Lee Apollo Bosc2008bosc_2008
 
Kallio Chipster Bosc2008
Kallio Chipster Bosc2008Kallio Chipster Bosc2008
Kallio Chipster Bosc2008bosc_2008
 
Bhagat Myexperiment Bosc2008
Bhagat Myexperiment Bosc2008Bhagat Myexperiment Bosc2008
Bhagat Myexperiment Bosc2008bosc_2008
 
Introduction Bosc2008
Introduction Bosc2008Introduction Bosc2008
Introduction Bosc2008bosc_2008
 
Smith T Bio Hdf Bosc2008
Smith T Bio Hdf Bosc2008Smith T Bio Hdf Bosc2008
Smith T Bio Hdf Bosc2008bosc_2008
 
Kitzmiller Openhelisphereproject Bosc2008
Kitzmiller Openhelisphereproject Bosc2008Kitzmiller Openhelisphereproject Bosc2008
Kitzmiller Openhelisphereproject Bosc2008bosc_2008
 
Heuer Bio Java Bosc2008
Heuer Bio Java Bosc2008Heuer Bio Java Bosc2008
Heuer Bio Java Bosc2008bosc_2008
 
Andy Jenkinson Bosc Das 2008
Andy Jenkinson Bosc Das 2008Andy Jenkinson Bosc Das 2008
Andy Jenkinson Bosc Das 2008bosc_2008
 
Mackey Bio Perl Bosc2008
Mackey Bio Perl Bosc2008Mackey Bio Perl Bosc2008
Mackey Bio Perl Bosc2008bosc_2008
 
Faga C Map Bosc2008
Faga C Map Bosc2008Faga C Map Bosc2008
Faga C Map Bosc2008bosc_2008
 
Greene Bosc2008
Greene Bosc2008Greene Bosc2008
Greene Bosc2008bosc_2008
 
Gnaneshan Public Health Bosc2008
Gnaneshan Public Health Bosc2008Gnaneshan Public Health Bosc2008
Gnaneshan Public Health Bosc2008bosc_2008
 
Gordon Semantic Web 2008
Gordon Semantic Web 2008Gordon Semantic Web 2008
Gordon Semantic Web 2008bosc_2008
 
Menager Mobyle Bosc2008
Menager Mobyle Bosc2008Menager Mobyle Bosc2008
Menager Mobyle Bosc2008bosc_2008
 
Haider Embrace Bosc2008
Haider Embrace Bosc2008Haider Embrace Bosc2008
Haider Embrace Bosc2008bosc_2008
 
Antao Biopython Bosc2008
Antao Biopython Bosc2008Antao Biopython Bosc2008
Antao Biopython Bosc2008bosc_2008
 
Banks Genographer Bosc2008
Banks Genographer Bosc2008Banks Genographer Bosc2008
Banks Genographer Bosc2008bosc_2008
 
Wilson Make Bosc2008
Wilson Make Bosc2008Wilson Make Bosc2008
Wilson Make Bosc2008bosc_2008
 
Smith Inter Mine Bosc2008
Smith Inter Mine Bosc2008Smith Inter Mine Bosc2008
Smith Inter Mine Bosc2008bosc_2008
 
O Connor Solexa Tools Bosc2008
O Connor Solexa Tools Bosc2008O Connor Solexa Tools Bosc2008
O Connor Solexa Tools Bosc2008bosc_2008
 

Mehr von bosc_2008 (20)

Lee Apollo Bosc2008
Lee Apollo Bosc2008Lee Apollo Bosc2008
Lee Apollo Bosc2008
 
Kallio Chipster Bosc2008
Kallio Chipster Bosc2008Kallio Chipster Bosc2008
Kallio Chipster Bosc2008
 
Bhagat Myexperiment Bosc2008
Bhagat Myexperiment Bosc2008Bhagat Myexperiment Bosc2008
Bhagat Myexperiment Bosc2008
 
Introduction Bosc2008
Introduction Bosc2008Introduction Bosc2008
Introduction Bosc2008
 
Smith T Bio Hdf Bosc2008
Smith T Bio Hdf Bosc2008Smith T Bio Hdf Bosc2008
Smith T Bio Hdf Bosc2008
 
Kitzmiller Openhelisphereproject Bosc2008
Kitzmiller Openhelisphereproject Bosc2008Kitzmiller Openhelisphereproject Bosc2008
Kitzmiller Openhelisphereproject Bosc2008
 
Heuer Bio Java Bosc2008
Heuer Bio Java Bosc2008Heuer Bio Java Bosc2008
Heuer Bio Java Bosc2008
 
Andy Jenkinson Bosc Das 2008
Andy Jenkinson Bosc Das 2008Andy Jenkinson Bosc Das 2008
Andy Jenkinson Bosc Das 2008
 
Mackey Bio Perl Bosc2008
Mackey Bio Perl Bosc2008Mackey Bio Perl Bosc2008
Mackey Bio Perl Bosc2008
 
Faga C Map Bosc2008
Faga C Map Bosc2008Faga C Map Bosc2008
Faga C Map Bosc2008
 
Greene Bosc2008
Greene Bosc2008Greene Bosc2008
Greene Bosc2008
 
Gnaneshan Public Health Bosc2008
Gnaneshan Public Health Bosc2008Gnaneshan Public Health Bosc2008
Gnaneshan Public Health Bosc2008
 
Gordon Semantic Web 2008
Gordon Semantic Web 2008Gordon Semantic Web 2008
Gordon Semantic Web 2008
 
Menager Mobyle Bosc2008
Menager Mobyle Bosc2008Menager Mobyle Bosc2008
Menager Mobyle Bosc2008
 
Haider Embrace Bosc2008
Haider Embrace Bosc2008Haider Embrace Bosc2008
Haider Embrace Bosc2008
 
Antao Biopython Bosc2008
Antao Biopython Bosc2008Antao Biopython Bosc2008
Antao Biopython Bosc2008
 
Banks Genographer Bosc2008
Banks Genographer Bosc2008Banks Genographer Bosc2008
Banks Genographer Bosc2008
 
Wilson Make Bosc2008
Wilson Make Bosc2008Wilson Make Bosc2008
Wilson Make Bosc2008
 
Smith Inter Mine Bosc2008
Smith Inter Mine Bosc2008Smith Inter Mine Bosc2008
Smith Inter Mine Bosc2008
 
O Connor Solexa Tools Bosc2008
O Connor Solexa Tools Bosc2008O Connor Solexa Tools Bosc2008
O Connor Solexa Tools Bosc2008
 

Kürzlich hochgeladen

GenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdfGenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdflior mazor
 
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024The Digital Insurer
 
Real Time Object Detection Using Open CV
Real Time Object Detection Using Open CVReal Time Object Detection Using Open CV
Real Time Object Detection Using Open CVKhem
 
How to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected WorkerHow to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected WorkerThousandEyes
 
2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...Martijn de Jong
 
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, AdobeApidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobeapidays
 
GenCyber Cyber Security Day Presentation
GenCyber Cyber Security Day PresentationGenCyber Cyber Security Day Presentation
GenCyber Cyber Security Day PresentationMichael W. Hawkins
 
Scaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationScaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationRadu Cotescu
 
🐬 The future of MySQL is Postgres 🐘
🐬  The future of MySQL is Postgres   🐘🐬  The future of MySQL is Postgres   🐘
🐬 The future of MySQL is Postgres 🐘RTylerCroy
 
Data Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt RobisonData Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt RobisonAnna Loughnan Colquhoun
 
Advantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessAdvantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessPixlogix Infotech
 
Boost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityBoost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityPrincipled Technologies
 
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data DiscoveryTrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data DiscoveryTrustArc
 
Automating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps ScriptAutomating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps Scriptwesley chun
 
Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024The Digital Insurer
 
Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)wesley chun
 
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc
 
Tech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdfTech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdfhans926745
 
Handwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsHandwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsMaria Levchenko
 
Artificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and MythsArtificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and MythsJoaquim Jorge
 

Kürzlich hochgeladen (20)

GenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdfGenAI Risks & Security Meetup 01052024.pdf
GenAI Risks & Security Meetup 01052024.pdf
 
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024
Bajaj Allianz Life Insurance Company - Insurer Innovation Award 2024
 
Real Time Object Detection Using Open CV
Real Time Object Detection Using Open CVReal Time Object Detection Using Open CV
Real Time Object Detection Using Open CV
 
How to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected WorkerHow to Troubleshoot Apps for the Modern Connected Worker
How to Troubleshoot Apps for the Modern Connected Worker
 
2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...2024: Domino Containers - The Next Step. News from the Domino Container commu...
2024: Domino Containers - The Next Step. News from the Domino Container commu...
 
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, AdobeApidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
Apidays New York 2024 - Scaling API-first by Ian Reasor and Radu Cotescu, Adobe
 
GenCyber Cyber Security Day Presentation
GenCyber Cyber Security Day PresentationGenCyber Cyber Security Day Presentation
GenCyber Cyber Security Day Presentation
 
Scaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organizationScaling API-first – The story of a global engineering organization
Scaling API-first – The story of a global engineering organization
 
🐬 The future of MySQL is Postgres 🐘
🐬  The future of MySQL is Postgres   🐘🐬  The future of MySQL is Postgres   🐘
🐬 The future of MySQL is Postgres 🐘
 
Data Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt RobisonData Cloud, More than a CDP by Matt Robison
Data Cloud, More than a CDP by Matt Robison
 
Advantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your BusinessAdvantages of Hiring UIUX Design Service Providers for Your Business
Advantages of Hiring UIUX Design Service Providers for Your Business
 
Boost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivityBoost PC performance: How more available memory can improve productivity
Boost PC performance: How more available memory can improve productivity
 
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data DiscoveryTrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
TrustArc Webinar - Unlock the Power of AI-Driven Data Discovery
 
Automating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps ScriptAutomating Google Workspace (GWS) & more with Apps Script
Automating Google Workspace (GWS) & more with Apps Script
 
Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024Axa Assurance Maroc - Insurer Innovation Award 2024
Axa Assurance Maroc - Insurer Innovation Award 2024
 
Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)Powerful Google developer tools for immediate impact! (2023-24 C)
Powerful Google developer tools for immediate impact! (2023-24 C)
 
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law DevelopmentsTrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
TrustArc Webinar - Stay Ahead of US State Data Privacy Law Developments
 
Tech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdfTech Trends Report 2024 Future Today Institute.pdf
Tech Trends Report 2024 Future Today Institute.pdf
 
Handwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed textsHandwritten Text Recognition for manuscripts and early printed texts
Handwritten Text Recognition for manuscripts and early printed texts
 
Artificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and MythsArtificial Intelligence: Facts and Myths
Artificial Intelligence: Facts and Myths
 

Prins Bio Lib Bosc2008

  • 1. Introducing BioLib C and C++ libraries for BioPerl, BioJAVA, BioPython, BioRuby. . . Pjotr Prins (pjotr.prins at wur.nl) Bioinformatics Open Source Conference 2008 Introducing BioLib – p. 1
  • 2. The problem No Bio* language is clearly superior - all have strengths and weaknesses No language clearly dominates, at this point Meanwhile: Limited pool of talented and contributing programmers (50 globally?) Duplication of effort in all Bio* efforts Introducing BioLib – p. 2
  • 3. Solutions Option 1: Ignore and continue (or head-less chicken scenario) Option 2: Prevent duplication of effort (BioLib initiative; Biohackthon Tokyo, 2008) Introducing BioLib – p. 3