NCBI-Style Genomics and Biomedical Informatics Hackathons for rapid prototyping of novel pipelines.

1. Ben Busby, Ph.D.
NCBI
ben.busby@nih.gov
Making the Transition from Sharing Data to Sharing Knowledge

3. 3
Community Generated
Software Prototypes for Novel
Bioinformatics Workflows:
NCBI Hackathons!

8. www.iMetric.io

10. Available to
anyone on AWS

11. First 5 lectures
now available
on

14. www.iMetric.io

27. Combined score is
the average of SVs,
mappability, GC..
NCBI region list
Encode blacklist

28. DOCKER&
FLASK&
JUPYTER&
MONGO&
SHINY.

29. phenvar.colorado.edu

33. 33

36. MORE NEW STUFF!

39. https://ncbi-hackathons.github.io/GeneExpressionAging/ideogram

41. Other People’s Hackathons

42. @DCGenomics
Communication

43. Creating a Community
linkedin.com/in/DCGenomics

44. Creating a Community

45. Important Links and Thanks!
github.com/ncbi-hackathons
ncbi-hackathons.github.io
###
Thanks to:
All the hackathon attendees!
All the supporters from NCBI, esp. M Lesko, J Ostell, B Trawick, V Schneider, J Becker, L Williams
All the supporters outside NCBI, esp. L Federer, S Davis, A Wiley, many others!