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The Chemistry of
Monoclonal Antibodies

26th September 2012




                      Maria Connolly!
                      Director of Quality & Compliance!
Introduction

  Some of the questions I started with two years ago:

  •  How do mAbs differ from traditional molecules?
  •  How do they degrade?
  •  What factors affect mAb stability?
  •  How safe are the degradation products?
  •  What is an acceptable degradation limit?
  •  How can we detect degradation products?
Overview

 •  What are mAbs?
 •  How are they constructed?
 •  How do they breakdown?
 •  What is it that drives degradation?
 •  Examples of degradation?
 •  Assessing mAb stability
What are mAbs?
How do mAbs differ from traditional chemical molecules?
    Size




                  Aspirin    Growth hormone    IgG Antibody
                 21 atoms      3,000 atoms     25,000 atoms
    Complexity




                 150 parts     14,000 parts     6,000,000 parts
Types of Monoclonal Antibody
Immunogenicity



   TGN1412
How are they
constructed?
Structure of Monoclonal Antibody!
 Antigen specific                      •  Therapeutic mAbs
 binding                                  predominantly of IgG1 class
                                          and subtype
                                       •  IgG consist of 2 heavy and
                                          light chains
                                       •  Around 150kDa in size
                                       •  Chains held together by
                                          disulfide bond between
                                          conserved cysteine residues
                                          at the hinge region
                                       •  Fc region binding cell
                                          surface Ig receptors
                                       •  Antigen binding variable
                     Cell receptor        region
                    specific binding
Structure of Monoclonal Antibody!
Antigen specific                      •  Therapeutic mAbs
binding                                  predominantly of IgG1 class
                                         and subtype
                                      •  IgG consist of 2 heavy and
                                         light chains
                                      •  Around 150kDa in size
                                      •  Chains held together by
                                         disulfide bond between
                                         conserved cysteine residues
                                         at the hinge region
                                      •  Fc region binding cell surface
                                         Ig receptors
                                      •  Antigen binding variable
                    Cell receptor        region
                   specific binding
The importance of structure on the mechanism of action!
                                           An#body	
  dependant	
  cellular	
  cytotoxicity	
  


Mechanism of action
include:

 •  Cell death via ADCC

 •  Cell death CDCC

 •  Inducing apoptosis

 •  Neutralization of
    soluble molecules

 •  Mediating cellular
    activity
The importance of structure on the mechanism of action!

 ELISA studies are not sufficient as they:

   •  only tell you they are binding
   •  do not demonstrate biological activity

 Cell based studies

   •  demonstrate biological activity
   •  may require multiple functional studies to assess various modes
      of action
Specificity is derived from protein structure (shape)!
   Primary Structure
   – the amino acid sequence linked via covalent peptide bonds




   Secondary Structure
   – linking of sequences of amino acids by non covalent interactions
     (Alpha helices, Beta sheets)
Specificity is derived from protein structure (shape)!

   Primary Structure
   – the amino acid sequence

   Secondary Structure
   – linking of sequences of amino
   acids by hydrogen bonding (beta
   sheets, alpha helices)

   Tertiary Structure
   – attractions between beta sheets and alpha
   helices to give 3-D structures

   Quaternary Structures
   – protein consisting of more than one amino
   acid chain (complex of protein molecules)
Monoclonal antibody quaternary structure!
                                        •  Y shaped Quaternary
                                           structure.

                                        •  Functionality relies on
                                           quaternary structure

                                        •  Interchain disulfide bonds at
                                           the hinge region and non
                                           covalent interactions between
                                           CH3 domains stabilise the
                                           structure

                                        •  CH2 domain is overlaid by an
                                           oligosaccharide covalently
                                           attached at Asn297
Glycans influence Monoclonal antibody function!
                                 Glycosylation is a critical quality
                                 attribute

                                     •  CH2 domain is overlaid by an
                                        oligosaccharide covalently attached
                                        at Asn297
                                     •  Small contribution to mAb size
                                     •  Influence t ½
                                     •  Stability to degradation
                                     •  Influence protein folding
                                     •  Solubility
                                     •  Changes can alter functional
                                        activity
                                     •  Immunogenicity
How many species!!
How do they
break down?
Processes contributing to degradation of mAbs!

                       Native protein




  Chemical Stability                                    Physical stability/Aggregation


     Oxidation         Conformational Stability                        Colloidal Stability
                            (2ry, 3ry, 4ry structure)          (multimers, sub-visible/visible particles)

      Deamidation
                          Free energy change                              Intermolecular
      Hydrolysis                                                            interactions

     Proteolysis
                        Unfolded states
                                                                                    Aggregates
Processes contributing to degradation mAbs!

  Chemical degradation - Oxidation



                                               Extra bonds




                                              Reduction in pH
Processes contributing to degradation mAbs!

  Chemical degradation - Oxidation




             Changes to hydrogen bonding and conformation
Degradation products!


    Chemical degradation - Hydrolysis
Processes contributing to degradation mAbs

  Chemical degradation - Deamidation



                                                           - Change in conformation
                                                           - Change in bonding




                     - Change in bonding     - Change in conformation
                     - Change in pH          - Change in bonding
                                             - Change in pH
Processes contributing to degradation mAbs

  Physical instabilities


  Fragmentation - Dissociation or cleavage of chains



  Loss of activity

  Denaturation - Change of shape/structure – alteration of bonds
  necessary for native conformation
Processes contributing to degradation mAbs


  Aggregation - Can form dimers, tetramers or larger
                aggregates/particles

             •  Decreased bioactivity

             •  Increased immunogenicity
                                                         aggregated protein
             •  Affect fluid dynamics in organ systems
What is it that drives
  degradation?
Processes contributing to degradation mAbs

  Formulation – need to maintain mAb conformation


  •  Excipients - sucrose, trehalose, sodium chloride



  •  Surfactant - polysorbate 80, polysorbate 20



  •  Buffers - Sodium phosphate, sodium citrate, HCl, L-histadine
Processes contributing to degradation mAbs
  Storage

     •    Degradation of excipients




     •    Heating

     •    Freezing/ thawing

     •    Light / photooxidation
Processes contributing to degradation mAbs

   Manufacturing process

    •    Shaking

    •    Oxygen exposure

    •    Metals

    •    Filters

    •    Shearing

    •    Dilution
Processes contributing to degradation mAbs

  Surface interactions

  • Adsorption - interact with all types of surfaces. Can potentially
  interact with devices during production and storage

  • Leaching – presence of solubilising agents in the formulation
  increases likelihood of leaching.

  •  Silicon – act as nucleation sites in certain circumstances




                                    silicone oil
Degradation
 examples
Bevacizumab aggregation


                                 Silicon



                  Surfactant                 Agitation


                               Bevacizumab
                               Aggregation


                   Storage                    Storage
                   device                    conditions


                                  Light
                                exposure
Side effects of licenced vs unlicenced products
 Eye disorders
 Very common     Vitritis, vitreous detachment, retinal haemorrhage, visual disturbance, eye pain,
                 vitreous floaters, conjunctival haemorrhage, eye irritation, foreign body sensation
                 in eyes, lacrimation increased, blepharitis, dry eye, ocular hyperaemia, eye pruritus.
                 Intraocular pressure increased

 Common          Retinal degeneration, retinal disorder, retinal detachment, retinal tear,
                 detachment of the retinal pigment epithelium, retinal pigment epithelium tear,
                 visual acuity reduced, vitreous haemorrhage, vitreous disorder, uveitis, iritis,
                 iridocyclitis, cataract, cataract subcapsular, posterior capsule opacification, punctuate keratitis,
                 corneal abrasion, anterior chamber flare, vision blurred, injection site haemorrhage, eye
                 haemorrhage, conjunctivitis, conjunctivitis allergic, eye discharge, photopsia,
                 photophobia, ocular discomfort, eyelid oedema, eyelid pain, conjunctival hyperaemia.
 Uncommon        Blindness, endophthalmitis, hypopyon, hyphaema, keratopathy, iris adhesion,
                 corneal deposits, corneal oedema, corneal striae, injection site pain, injection site irritation,
                 abnormal sensation in eye, eyelid irritation.
How safe are degradation products?




                Health and Drug Alert

                Epoetin alfa (Eprex): reports
                of pure red blood cell aplasia
Assessing
mAb stability
Stability references
 International Conference for
 Harmonization (ICH)

     • ICH Q2 R1 Analytical validation
     • ICH Q5C Stability Testing of
     Biotechnological/Biological
     products
     • ICH Q6B Specifications Test
     Procedures and Acceptance
     Criteria for Biotechnological/
     Biological Products
Stability references

   NHS guidelines (draft) require:


   •  Physical
   •  Chemical
   •  Functional


   •  Needs to be adopted, yellow cover
Different techniques will give you different information
Processes contributing to degradation of mAbs

                          Native protein



    Chemical Stability                                    Physical stability/Aggregation


       Oxidation           Conformational Stability                      Colloidal Stability
                              (2ry, 3ry, 4ry structure)          (multimers, sub-visible/visible particles)

       Deamidation
                             Free energy change                             Intermolecular
        Hydrolysis                                                            interactions

       Proteolysis
                           Unfolded states
                                                                                      Aggregates


           Biologics specific techniques                         Traditional assay techniques
Conclusion!

  •  Remember ICH guidance requires
          chemical, physical & functional activity for a reason!


  •  Many physical and chemical factors can affect
          product quality, efficacy & safety issues


  •  It is important to understand the chemistry of mAbs in order to:
          design stability studies which can effectively identify degradation
          products
          evaluate the impact on product quality and safety
Conclusion

   The less we know about a mAb the more stable we think it is!
Follow us at - mabstalk.com

26th September 2012




                      Maria Connolly!
                      Director of Quality & Compliance!

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The Chemistry of Monoclonal Antibodies

  • 1. The Chemistry of Monoclonal Antibodies 26th September 2012 Maria Connolly! Director of Quality & Compliance!
  • 2. Introduction Some of the questions I started with two years ago: •  How do mAbs differ from traditional molecules? •  How do they degrade? •  What factors affect mAb stability? •  How safe are the degradation products? •  What is an acceptable degradation limit? •  How can we detect degradation products?
  • 3. Overview •  What are mAbs? •  How are they constructed? •  How do they breakdown? •  What is it that drives degradation? •  Examples of degradation? •  Assessing mAb stability
  • 5. How do mAbs differ from traditional chemical molecules? Size Aspirin Growth hormone IgG Antibody 21 atoms 3,000 atoms 25,000 atoms Complexity 150 parts 14,000 parts 6,000,000 parts
  • 7. Immunogenicity TGN1412
  • 9. Structure of Monoclonal Antibody! Antigen specific •  Therapeutic mAbs binding predominantly of IgG1 class and subtype •  IgG consist of 2 heavy and light chains •  Around 150kDa in size •  Chains held together by disulfide bond between conserved cysteine residues at the hinge region •  Fc region binding cell surface Ig receptors •  Antigen binding variable Cell receptor region specific binding
  • 10. Structure of Monoclonal Antibody! Antigen specific •  Therapeutic mAbs binding predominantly of IgG1 class and subtype •  IgG consist of 2 heavy and light chains •  Around 150kDa in size •  Chains held together by disulfide bond between conserved cysteine residues at the hinge region •  Fc region binding cell surface Ig receptors •  Antigen binding variable Cell receptor region specific binding
  • 11. The importance of structure on the mechanism of action! An#body  dependant  cellular  cytotoxicity   Mechanism of action include: •  Cell death via ADCC •  Cell death CDCC •  Inducing apoptosis •  Neutralization of soluble molecules •  Mediating cellular activity
  • 12. The importance of structure on the mechanism of action! ELISA studies are not sufficient as they: •  only tell you they are binding •  do not demonstrate biological activity Cell based studies •  demonstrate biological activity •  may require multiple functional studies to assess various modes of action
  • 13. Specificity is derived from protein structure (shape)! Primary Structure – the amino acid sequence linked via covalent peptide bonds Secondary Structure – linking of sequences of amino acids by non covalent interactions (Alpha helices, Beta sheets)
  • 14. Specificity is derived from protein structure (shape)! Primary Structure – the amino acid sequence Secondary Structure – linking of sequences of amino acids by hydrogen bonding (beta sheets, alpha helices) Tertiary Structure – attractions between beta sheets and alpha helices to give 3-D structures Quaternary Structures – protein consisting of more than one amino acid chain (complex of protein molecules)
  • 15. Monoclonal antibody quaternary structure! •  Y shaped Quaternary structure. •  Functionality relies on quaternary structure •  Interchain disulfide bonds at the hinge region and non covalent interactions between CH3 domains stabilise the structure •  CH2 domain is overlaid by an oligosaccharide covalently attached at Asn297
  • 16. Glycans influence Monoclonal antibody function! Glycosylation is a critical quality attribute •  CH2 domain is overlaid by an oligosaccharide covalently attached at Asn297 •  Small contribution to mAb size •  Influence t ½ •  Stability to degradation •  Influence protein folding •  Solubility •  Changes can alter functional activity •  Immunogenicity
  • 19. Processes contributing to degradation of mAbs! Native protein Chemical Stability Physical stability/Aggregation Oxidation Conformational Stability Colloidal Stability (2ry, 3ry, 4ry structure) (multimers, sub-visible/visible particles) Deamidation Free energy change Intermolecular Hydrolysis interactions Proteolysis Unfolded states Aggregates
  • 20. Processes contributing to degradation mAbs! Chemical degradation - Oxidation Extra bonds Reduction in pH
  • 21. Processes contributing to degradation mAbs! Chemical degradation - Oxidation Changes to hydrogen bonding and conformation
  • 22. Degradation products! Chemical degradation - Hydrolysis
  • 23. Processes contributing to degradation mAbs Chemical degradation - Deamidation - Change in conformation - Change in bonding - Change in bonding - Change in conformation - Change in pH - Change in bonding - Change in pH
  • 24. Processes contributing to degradation mAbs Physical instabilities Fragmentation - Dissociation or cleavage of chains Loss of activity Denaturation - Change of shape/structure – alteration of bonds necessary for native conformation
  • 25. Processes contributing to degradation mAbs Aggregation - Can form dimers, tetramers or larger aggregates/particles •  Decreased bioactivity •  Increased immunogenicity aggregated protein •  Affect fluid dynamics in organ systems
  • 26. What is it that drives degradation?
  • 27. Processes contributing to degradation mAbs Formulation – need to maintain mAb conformation •  Excipients - sucrose, trehalose, sodium chloride •  Surfactant - polysorbate 80, polysorbate 20 •  Buffers - Sodium phosphate, sodium citrate, HCl, L-histadine
  • 28. Processes contributing to degradation mAbs Storage •  Degradation of excipients •  Heating •  Freezing/ thawing •  Light / photooxidation
  • 29. Processes contributing to degradation mAbs Manufacturing process •  Shaking •  Oxygen exposure •  Metals •  Filters •  Shearing •  Dilution
  • 30. Processes contributing to degradation mAbs Surface interactions • Adsorption - interact with all types of surfaces. Can potentially interact with devices during production and storage • Leaching – presence of solubilising agents in the formulation increases likelihood of leaching. •  Silicon – act as nucleation sites in certain circumstances silicone oil
  • 32. Bevacizumab aggregation Silicon Surfactant Agitation Bevacizumab Aggregation Storage Storage device conditions Light exposure
  • 33. Side effects of licenced vs unlicenced products Eye disorders Very common Vitritis, vitreous detachment, retinal haemorrhage, visual disturbance, eye pain, vitreous floaters, conjunctival haemorrhage, eye irritation, foreign body sensation in eyes, lacrimation increased, blepharitis, dry eye, ocular hyperaemia, eye pruritus. Intraocular pressure increased Common Retinal degeneration, retinal disorder, retinal detachment, retinal tear, detachment of the retinal pigment epithelium, retinal pigment epithelium tear, visual acuity reduced, vitreous haemorrhage, vitreous disorder, uveitis, iritis, iridocyclitis, cataract, cataract subcapsular, posterior capsule opacification, punctuate keratitis, corneal abrasion, anterior chamber flare, vision blurred, injection site haemorrhage, eye haemorrhage, conjunctivitis, conjunctivitis allergic, eye discharge, photopsia, photophobia, ocular discomfort, eyelid oedema, eyelid pain, conjunctival hyperaemia. Uncommon Blindness, endophthalmitis, hypopyon, hyphaema, keratopathy, iris adhesion, corneal deposits, corneal oedema, corneal striae, injection site pain, injection site irritation, abnormal sensation in eye, eyelid irritation.
  • 34. How safe are degradation products? Health and Drug Alert Epoetin alfa (Eprex): reports of pure red blood cell aplasia
  • 36. Stability references International Conference for Harmonization (ICH) • ICH Q2 R1 Analytical validation • ICH Q5C Stability Testing of Biotechnological/Biological products • ICH Q6B Specifications Test Procedures and Acceptance Criteria for Biotechnological/ Biological Products
  • 37. Stability references NHS guidelines (draft) require: •  Physical •  Chemical •  Functional •  Needs to be adopted, yellow cover
  • 38. Different techniques will give you different information
  • 39. Processes contributing to degradation of mAbs Native protein Chemical Stability Physical stability/Aggregation Oxidation Conformational Stability Colloidal Stability (2ry, 3ry, 4ry structure) (multimers, sub-visible/visible particles) Deamidation Free energy change Intermolecular Hydrolysis interactions Proteolysis Unfolded states Aggregates Biologics specific techniques Traditional assay techniques
  • 40. Conclusion! •  Remember ICH guidance requires chemical, physical & functional activity for a reason! •  Many physical and chemical factors can affect product quality, efficacy & safety issues •  It is important to understand the chemistry of mAbs in order to: design stability studies which can effectively identify degradation products evaluate the impact on product quality and safety
  • 41. Conclusion The less we know about a mAb the more stable we think it is!
  • 42. Follow us at - mabstalk.com 26th September 2012 Maria Connolly! Director of Quality & Compliance!