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Clinical modelling with
openEHR Archetypes
Koray Atalag, MD, PhD, FACHI
Senior Research Fellow (ABI & NIHI)
k.atalag@auckland.ac.nz
Outline
• What is openEHR?
• Multi-level Modelling
• Archetypes & Templates
• Setting Semantics
• Tooling – modelling & repository/governance
 Open source specs & software for representing health
information and person-centric records
– Based on 20 years of international research, including Good European
Health Record Project (GEHR)
– Superset of ISO/CEN 13606 EHR standard
 Not-for-profit organisation - established in 2001
www.openEHR.org
 Extensively used in research
 Separation of clinical
and technical worlds
• Big international community
• Online models repository
http://openehr.org/ckm
Multi-Level Modelling
Reference Model
Logical building blocks of EHR
Compositions
EHR
Folders
Sections
Clusters
Elements
Data values
Entries
 Lifelong
 Longitudinal
 Versioned
 Comprehensive
 Computable
 Secure
 Sharable
RM: Text Data Type
7
RM:
Quantity
Data
Type
Units:
* Units part of RM
not domain model
Archetypes?
• Formal constraints on Reference Model Classes
– Structural constraints: List, table, tree
– What labels can be used?
– What data types can be used?
– What values are allowed for these data types?
– How many times a data item can exist?
– Whether a particular data item is mandatory
– Whether a selection is involved from a number of
items/values
• Formal semantics via terminology bindings
• Meta-data and language translations
Anatomy of an
Archetype
11
12
Archetype EditorAll about
tooling mate!
Example: NZ
Cardiac
Registry
14
Screenshot of openEHR Template from a tool
Semantics in openEHR
• Whole-of-model meta-data:
– Description, concept references (terminology/ontology), purpose,
use, misuse, provenance, translations
• Item level semantics
– Trees/Clusters (Structure)
– Leaf nodes (Data Elements)
Formally: different types of terminology bindings:
1) linking an item to external terminology/ontology for the
purpose of defining its real-world meaning
2) Linking data element values to external terminology (e.g. a
RefSet or terminology query)
• Instance level semantic annotations – applies to
actual data collected
Blood Pressure Measurement
mindmap representation of openEHR Archetype
1) Linking items to SNOMED to define clinical meaning
NZ Cardiac Registry: Medication
2) Linking data element values to external terminology (NZULM)
RM: Text Data Type Instance level
semantic annotations
19
OnlineModelRepository
20
21
22

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Clinical modelling with openEHR Archetypes

  • 1. Clinical modelling with openEHR Archetypes Koray Atalag, MD, PhD, FACHI Senior Research Fellow (ABI & NIHI) k.atalag@auckland.ac.nz
  • 2. Outline • What is openEHR? • Multi-level Modelling • Archetypes & Templates • Setting Semantics • Tooling – modelling & repository/governance
  • 3.  Open source specs & software for representing health information and person-centric records – Based on 20 years of international research, including Good European Health Record Project (GEHR) – Superset of ISO/CEN 13606 EHR standard  Not-for-profit organisation - established in 2001 www.openEHR.org  Extensively used in research  Separation of clinical and technical worlds • Big international community • Online models repository http://openehr.org/ckm
  • 5. Reference Model Logical building blocks of EHR Compositions EHR Folders Sections Clusters Elements Data values Entries  Lifelong  Longitudinal  Versioned  Comprehensive  Computable  Secure  Sharable
  • 8. Archetypes? • Formal constraints on Reference Model Classes – Structural constraints: List, table, tree – What labels can be used? – What data types can be used? – What values are allowed for these data types? – How many times a data item can exist? – Whether a particular data item is mandatory – Whether a selection is involved from a number of items/values • Formal semantics via terminology bindings • Meta-data and language translations
  • 10.
  • 11. 11
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  • 14. Example: NZ Cardiac Registry 14 Screenshot of openEHR Template from a tool
  • 15. Semantics in openEHR • Whole-of-model meta-data: – Description, concept references (terminology/ontology), purpose, use, misuse, provenance, translations • Item level semantics – Trees/Clusters (Structure) – Leaf nodes (Data Elements) Formally: different types of terminology bindings: 1) linking an item to external terminology/ontology for the purpose of defining its real-world meaning 2) Linking data element values to external terminology (e.g. a RefSet or terminology query) • Instance level semantic annotations – applies to actual data collected
  • 16. Blood Pressure Measurement mindmap representation of openEHR Archetype 1) Linking items to SNOMED to define clinical meaning
  • 17. NZ Cardiac Registry: Medication 2) Linking data element values to external terminology (NZULM)
  • 18. RM: Text Data Type Instance level semantic annotations
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