This presentation describes the working of PubTator

1. By Anil Kumar
M.Sc. II
Systems Biology and Bioinformatics

3.  PubTator is a automated web based system for
assisting biocuration.
 Manually curating knowledge from biomedical
literature into structured databases is highly expensive
and time consuming.
 It makes it difficult to keep pace with the rapid growth
of the literature.

4.  PubTator is unique in a way by providing PubMed like
interface andis equipped with challenge winning text
mining algorithms.
 PubTator has shown the capability of improving both
efficiency and accuracy of manual curation.
 It is publicly available at:
http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/
PubTator/

5. Homepage

6. Taxonomy
Filtering
BioConcepts
Display
Taxonomy
Menu

7. 1. Click
here to
select this
pmid
1. Click here to select
all
2. Add to a new
Collection
2. Add to a new
Collection
Creating a new Collection

8. Defining a new Annotation Collection

9. New
Collection
New Collection Page

10. Creating a new Bioconcept
and a Biorelation

11. Add a sub-
bioconcept/ delete
bioconcept
Create a
bioconcept
Bioconcept definition
Choose the ancestors and
children in bioconcept ontology
structure

12. Create a bio-
relation
Bio-relation
definition

13. Document Triage
Annotating a File
1. Select text
2. Click on a
relevant button

14. 3. Enter ID of
the bioconcept

15. After Annotation

17. 1. Select
Bioconcept
2. Click Button
3. Bio-relation
display
To save annotations
click on this button
Establishing Biorelations

18. Download
Annotations for
single PMID
Download
annotations for
this collection
Downloading Annotations

19. Download annotations in BioC format

20. Thank You