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Pathomation Pma.core 2 technology

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Yves Sucaet

A in-depth look at the various components of the PMA.core 2 tile server for digital pathology and virtual microscopy

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PMA.core 2 tile server architecture breakdown Yves Sucaet, PhD yves@pathomation.com February 2021
The big picture PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Imaging modalities PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Storage media support PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Vendor-agnostic PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Search capabilities PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Secure communication PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Userfriendly interaction PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Customizable visualization PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Powerful programmability PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
The big picture PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Access Control Lists PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
External users possible PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Lazy JIT content caching PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Define users PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Track usage via dashboard PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
External data connections PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
On-slide annotations PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Interactive form designer PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
21 CFR.11 compliant PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
Questions? info@pathomation.com https://www.pathomation.com

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Pathomation Pma.core 2 technology

  • 1. PMA.core 2 tile server architecture breakdown Yves Sucaet, PhD yves@pathomation.com February 2021
  • 2. The big picture PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 3. Imaging modalities PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 4. Storage media support PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 5. Vendor-agnostic PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 6. Search capabilities PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 7. Secure communication PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 8. Userfriendly interaction PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 9. Customizable visualization PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 10. Powerful programmability PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 11. The big picture PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 12. Access Control Lists PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 13. External users possible PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 14. Lazy JIT content caching PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 15. Define users PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 16. Track usage via dashboard PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 17. External data connections PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 18. On-slide annotations PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 19. Interactive form designer PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM
  • 20. 21 CFR.11 compliant PMA.core Imaging platforms WsiLib Local storage Network storage Cloud storage S3 / Azure brightfield fluorescence macroscopy Z-stacking PMA.search API GUI HTTP /region /tile /thumbnail /barcode Internal repos Users Visitor stats /api /admin Slide meta-data Annotations Forms 21 CFR.11 audit trailing Tile cache Auxiliary memory Image1.cache Image2.cache LDAP connectivity Caching service Jpg Png ACL Repo structures HTTP/HTTPS DICOM