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Bacterial Structure
and Mechanisms of
Antimicrobial Action
1
Bacteria
• Bacteria are prokaryotes
– They are cells
– They lack nuclei
• There are two professional viewpoints regarding the
general, overall classification of prokaryotes:
– Some biologists support the concept that they constitute two
domains: Archaea and Eubacteria
– Other biologists classify them into two kingdoms,
Archaebacteria and Eubacteria
• Most are very small – 0.5 – 1.0 mm in diameter
MECHANISMS OF ACTION
OF ANTIBACTERIAL DRUGS
• Inhibition of cell wall
synthesis
• Inhibition of protein
synthesis
• Inhibition of nucleic acid
synthesis
• Inhibition of metabolic
pathways
• Interference with cell
membrane integrity
Domains of Life
BASIC SHAPES OF EUBACTERIA
SPHERICAL
ROD-SHAPED
SPIRILLA
Gram stains and Morphology
Courtesy Loyola University
Prokaryotic Organization
• No nucleus
• DNA held in nucleoid
• Cytoplasm dense:
– Ribosomes
– Storage granules
– Limited membranes
• Plasma membrane
• Corkscrew flagellum
• Cell wall is complex
– Outer membrane
– Peptidoglycan layer
– Capsule
– Pili extend from cytoplasm
Prokaryotes
• Lack nuclei
• Typically lack or have very few internal membranes
• Cytoplasm contains ribosomes, storage granules that
hold glycogen, lipid, or phosphate compounds
• Metabolic enzymes are associated with the plasma
membrane, especially where it is infolded to form
limited internal membranes – such membranes are
generally referred to as a mesosome
• The plasma membrane interacts with the cytoplasm in
signaling functions
• Motile bacteria have a corkscrew flagellum
INHIBITION OF CELL
WALL SYNTHESIS
11
Cell Walls
• Provides support for cell
• Protects against osmotic shock
– Most bacteria well adapted to hypotonic conditions
– Most bacteria grow poorly in hypertonic
conditions; hence jams, salted foods prevent
bacterial growth
• Cell wall composition unique to bacteria
– Eubacterial cell wall made of peptidoglycan
• Complex of polymerized amino sugars and short
polypeptides
• Is really one polymer surrounding the cell
Gram-positive and Gram-negative
Cell Walls
14
Gram –ve Gram +ve
LPS
Peptidoglycan
Cell membrane
15
Gram’s +ve Bacteria Gram’s -ve Bacteria
Cell Wall Structure: Gram Positive
Bacterium
16
Cell Wall Structure: Gram Negative
Bacterium
17
Courtesy of Southern Illinois University Medical Microbiology
Inhibition of Cell wall
synthesis
Inhibition of Cell Wall Synthesis
• Antimicrobials that interfere with the synthesis of cell
wall (peptidoglycan) do not interfere with eukaryotic
cell
– Due to the lack of cell wall in animal cells and differences in
cell wall in plant cells
• These drugs have very high therapeutic index
– Low toxicity with high effectiveness
• Antimicrobials of this class include
– β lactam drugs
– Vancomycin
– Bacitracin
Présentation
23
b-lactams action mode
Antibiotics
Penicillin binding proteins
(Cell membrane)
(Peptidoglycan cell wall)
Penicillin inactivates
the transpeptidases
by covalently bonding
to the serine residues
within the active site
Bonding is by acetylation
Transpeptidases
(Penicillin Binding Proteins)
S
O
Competitively inhibits function of
penicillin-binding proteins
Inhibits peptide bridge
formation between
The weakness in the cell wall
causes the cell to lyze
MECHANISMS OF ACTION OF
ANTIBACTERIAL DRUGS
• The weakness in the cell wall
causes the cell to lyze.
• Penicillins and cephalosporins are
considered bactericidal.
• Penicillins are more effective
against Gram+ bacteria. This is
because Gram + bacteria have
penicillin binding proteins on their
walls.
The Cephalosporins
• Chemical structures make them resistant to
inactivation by certain β-lactamases
• Tend to have low affinity to penicillin-binding
proteins of Gram + bacteria, therefore, are
most effective against Gram – bacteria.
• Chemically modified to produce family of
related compounds
– First, second, third and fourth generation
cephalosporins
Vancomycin
• Inhibits formation of glycan chains
– Inhibits formation of peptidoglycans and cell wall construction
– Does not cross lipid membrane of Gram -
• Gram - organisms innately resistant
• Important in treating infections caused by penicillin
resistant Gram + organisms
• Must be given intravenously due to poor absorption
from intestinal tract
• Acquired resistance most often due to alterations in
side chain of NAM molecule
– Prevents binding of vancomycin to NAM component of glycan
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-alaCell membrane
Cell
wall
Transpeptidases (PBP’s)
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
N-acetylglucosamine
N-acetylmuramic acid
d-ala
L-glu
Lys
d-ala
d-ala
Mechanism of action
of Vancomycin
Vancomycin blocks cell wall synthesis
By binding to the d-alanyl-d-alanine site
on the growing peptidoglycan chain
• Bacitracin
– Interferes with transport of peptidoglycan
precursors across cytoplasmic membrane
– Toxicity limits use to topical applications
– Common ingredient in non-prescription first-aid
ointments
MECHANISMS OF ACTION OF
ANTIBACTERIAL DRUGS
INHIBITION OF
PROTEIN SYNTHESIS
35
Protein Synthesis
Inhibition of Protein Synthesis
• Structure of prokaryotic ribosome acts as
target for many antimicrobials of this class
– Differences in prokaryotic and eukaryotic
ribosomes responsible for selective toxicity
• Drugs of this class include
– Aminoglycosides
– Tetracyclins
– Macrolids
– Chloramphenicol
Inhibition of Protein Synthesis
How antibiotics work
Aminoglycosides
Aminoglycosides
Tetracyclines
Macrolides
Macrolides
Oxazolidinones: Linezolid
Inhibition of Nucleic
Acid Synthesis
46
47
Fluoroquinolones:
Inhibit action of topoisomerase DNA gyrase
Rifamycins:
Block prokaryotic RNA polymerase
Block initiation of transcription
• Inhibit action of topoisomerase DNA gyrase
– Topoisomerase maintains supercoiling of DNA
• Effective against Gram + and Gram -
• Examples include
– Ciprofloxacin and ofloxacin
• Resistance due to alteration of DNA gyrase
Fluoroquinolones
Topoisomerase
Rifamycins
• Block prokaryotic RNA polymerase
– Block initiation of transcription
• Rifampin most widely used rifamycins
• Effective against many Gram + and some Gram - as
well as members of genus Mycobacterium
• Primarily used to treat tuberculosis and Hansen’s
disease as well as preventing meningitis after
exposure to N. meningitidis
• Resistance due to mutation coding RNA polymerase
– Resistance develops rapidly
Inhibition of
Metabolic Pathways
51
Sulfonamides
• Group of related compounds
– Collectively called sulfa drugs
• Inhibit growth of Gram + and Gram - organisms
– Through competitive inhibition of enzyme that aids in
production of folic acid
• Structurally similar to para-aminobenzoic acid
– Substrate in folic acid pathway
• Human cells lack specific enzyme in folic acid
pathway
– Basis for selective toxicity
• Resistance due to plasmid
• Plasmid codes for enzyme that has lower affinity to drug
• Inhibits folic acid production
– Interferes with activity of enzyme following
enzyme inhibited by sulfonamides
• Often used synergistically with sulfonamide
• Most common mechanism of resistance is
plasmid encoded alternative enzyme
– Genes encoding resistant to sulfonamide and
trimethoprim are often carried on same plasmid
Trimethoprim
Interference with
Cell Membrane
Integrity
55
Interference with cell membrane
integrity
• Polymixn B most
common
• Binds membrane of Gram
- cells
– Alters permeability
• Leads to leakage of cell and
cell death
– Also bind eukaryotic
cells but to lesser
extent
Daptomycin’s Mechanism of
Action
• Irreversibly binds to cell
membrane of Gram-
positive bacteria
– Calcium-dependent
membrane insertion of
molecule
• Rapidly depolarizes the
cell membrane
– Efflux of potassium
– Destroys ion-concentration
gradient
BACTERIAL ENDOTOXINS
58
Bacterial Toxins
• Not secreted but are components of the cell
wall
• Affect host when released from dead bacteria
• Can bind macrophage, cause the release of
fever-inducing agents
• Resistant to heating
Lipopolysaccharides
60
61
LPS Pathogenesis
62
BACTERIAL EXOTOXINS
63
Exotoxins
• Pathogenic bacteria can produce exotoxins,
which increase their success but tend to be
very damaging to the host
– Often the toxin, not the bacterial infection, is most
dangerous
– Examples:
• Diphtheria toxin
• Botulism toxin
64
Summary of Virulence Determinants Of
Staphylococcus aureus
• http://textbookofbacteriology.net/staph.html
http://textbookofbacteriology.net/staph.html
Dephtheria Exotoxin
66
67
Capsules and Pili
• Many bacteria secrete a capsule, or slime
layer
– Used to attach, prevent phagocytosis
– Can be used to enhance infective bacteria
• Pili are hair-like appendages
– Allow attachment to surfaces
– Are sometimes involved in bacterial conjugation
(sexual activity that involves the transfer of DNA)
The Bacterial Flagellum
• Rotates
• Is corkscrew-shaped
• Three parts:
– Basal body
– Hook
– Filament (made of one protein:
flagellin)
• Cell uses ATP to pump protons out
• Protons diffuse through membrane
at basal body
• Breakdown of gradient converted
to rotation
Bacterial Chromosome
• Bacteria have a circular genomic DNA
molecule -
– Single chromosome
– ~1000X longer than cell if stretched out
• Also have plasmids
– Small, circular DNA fragments
– Can replicate independently of the genomic DNA
or be integrated into genomic DNA
– Carry genes for resistance, for genetic exchange
or for enzymes
Bacterial Sexual Reproduction
• Most simply put, sex is transfer of genetic information.
• Three mechanisms known for bacterial sexual
reproduction:
– Transformation
• Bacteria take up DNA from environment
• Griffith’s 1928 experiment with S and R bacteria showed that
DNA was heritable substance
– Transduction
• Genes are transferred through phage (next slide)
– Conjugation
• Two cells of opposite mating type come together, form pili bridges
bridges through which DNA is transferred
Conjugation of E. coli
hfr: high frequency recombination
73
MECHANISMS OF ACTION
OF ANTIBACTERIAL DRUGS
• Inhibition of cell wall
synthesis
• Inhibition of protein
synthesis
• Inhibition of nucleic acid
synthesis
• Inhibition of metabolic
pathways
• Interference with cell
membrane integrity
Antibiotic Mechanisms of Action

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Antibiotic Mechanisms of Action

  • 1. Bacterial Structure and Mechanisms of Antimicrobial Action 1
  • 2. Bacteria • Bacteria are prokaryotes – They are cells – They lack nuclei • There are two professional viewpoints regarding the general, overall classification of prokaryotes: – Some biologists support the concept that they constitute two domains: Archaea and Eubacteria – Other biologists classify them into two kingdoms, Archaebacteria and Eubacteria • Most are very small – 0.5 – 1.0 mm in diameter
  • 3. MECHANISMS OF ACTION OF ANTIBACTERIAL DRUGS • Inhibition of cell wall synthesis • Inhibition of protein synthesis • Inhibition of nucleic acid synthesis • Inhibition of metabolic pathways • Interference with cell membrane integrity
  • 5. BASIC SHAPES OF EUBACTERIA SPHERICAL ROD-SHAPED SPIRILLA
  • 6. Gram stains and Morphology Courtesy Loyola University
  • 7.
  • 8.
  • 9. Prokaryotic Organization • No nucleus • DNA held in nucleoid • Cytoplasm dense: – Ribosomes – Storage granules – Limited membranes • Plasma membrane • Corkscrew flagellum • Cell wall is complex – Outer membrane – Peptidoglycan layer – Capsule – Pili extend from cytoplasm
  • 10. Prokaryotes • Lack nuclei • Typically lack or have very few internal membranes • Cytoplasm contains ribosomes, storage granules that hold glycogen, lipid, or phosphate compounds • Metabolic enzymes are associated with the plasma membrane, especially where it is infolded to form limited internal membranes – such membranes are generally referred to as a mesosome • The plasma membrane interacts with the cytoplasm in signaling functions • Motile bacteria have a corkscrew flagellum
  • 11. INHIBITION OF CELL WALL SYNTHESIS 11
  • 12. Cell Walls • Provides support for cell • Protects against osmotic shock – Most bacteria well adapted to hypotonic conditions – Most bacteria grow poorly in hypertonic conditions; hence jams, salted foods prevent bacterial growth • Cell wall composition unique to bacteria – Eubacterial cell wall made of peptidoglycan • Complex of polymerized amino sugars and short polypeptides • Is really one polymer surrounding the cell
  • 14. 14 Gram –ve Gram +ve LPS Peptidoglycan Cell membrane
  • 15. 15 Gram’s +ve Bacteria Gram’s -ve Bacteria
  • 16. Cell Wall Structure: Gram Positive Bacterium 16
  • 17. Cell Wall Structure: Gram Negative Bacterium 17
  • 18. Courtesy of Southern Illinois University Medical Microbiology
  • 19.
  • 20. Inhibition of Cell wall synthesis
  • 21. Inhibition of Cell Wall Synthesis • Antimicrobials that interfere with the synthesis of cell wall (peptidoglycan) do not interfere with eukaryotic cell – Due to the lack of cell wall in animal cells and differences in cell wall in plant cells • These drugs have very high therapeutic index – Low toxicity with high effectiveness • Antimicrobials of this class include – β lactam drugs – Vancomycin – Bacitracin
  • 22.
  • 24. (Cell membrane) (Peptidoglycan cell wall) Penicillin inactivates the transpeptidases by covalently bonding to the serine residues within the active site Bonding is by acetylation Transpeptidases (Penicillin Binding Proteins) S O
  • 25. Competitively inhibits function of penicillin-binding proteins Inhibits peptide bridge formation between
  • 26. The weakness in the cell wall causes the cell to lyze
  • 27. MECHANISMS OF ACTION OF ANTIBACTERIAL DRUGS • The weakness in the cell wall causes the cell to lyze. • Penicillins and cephalosporins are considered bactericidal. • Penicillins are more effective against Gram+ bacteria. This is because Gram + bacteria have penicillin binding proteins on their walls.
  • 28. The Cephalosporins • Chemical structures make them resistant to inactivation by certain β-lactamases • Tend to have low affinity to penicillin-binding proteins of Gram + bacteria, therefore, are most effective against Gram – bacteria. • Chemically modified to produce family of related compounds – First, second, third and fourth generation cephalosporins
  • 29. Vancomycin • Inhibits formation of glycan chains – Inhibits formation of peptidoglycans and cell wall construction – Does not cross lipid membrane of Gram - • Gram - organisms innately resistant • Important in treating infections caused by penicillin resistant Gram + organisms • Must be given intravenously due to poor absorption from intestinal tract • Acquired resistance most often due to alterations in side chain of NAM molecule – Prevents binding of vancomycin to NAM component of glycan
  • 30.
  • 32. N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala
  • 33. N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala N-acetylglucosamine N-acetylmuramic acid d-ala L-glu Lys d-ala d-ala Mechanism of action of Vancomycin Vancomycin blocks cell wall synthesis By binding to the d-alanyl-d-alanine site on the growing peptidoglycan chain
  • 34. • Bacitracin – Interferes with transport of peptidoglycan precursors across cytoplasmic membrane – Toxicity limits use to topical applications – Common ingredient in non-prescription first-aid ointments MECHANISMS OF ACTION OF ANTIBACTERIAL DRUGS
  • 37. Inhibition of Protein Synthesis • Structure of prokaryotic ribosome acts as target for many antimicrobials of this class – Differences in prokaryotic and eukaryotic ribosomes responsible for selective toxicity • Drugs of this class include – Aminoglycosides – Tetracyclins – Macrolids – Chloramphenicol
  • 47. 47 Fluoroquinolones: Inhibit action of topoisomerase DNA gyrase Rifamycins: Block prokaryotic RNA polymerase Block initiation of transcription
  • 48. • Inhibit action of topoisomerase DNA gyrase – Topoisomerase maintains supercoiling of DNA • Effective against Gram + and Gram - • Examples include – Ciprofloxacin and ofloxacin • Resistance due to alteration of DNA gyrase Fluoroquinolones
  • 50. Rifamycins • Block prokaryotic RNA polymerase – Block initiation of transcription • Rifampin most widely used rifamycins • Effective against many Gram + and some Gram - as well as members of genus Mycobacterium • Primarily used to treat tuberculosis and Hansen’s disease as well as preventing meningitis after exposure to N. meningitidis • Resistance due to mutation coding RNA polymerase – Resistance develops rapidly
  • 52.
  • 53. Sulfonamides • Group of related compounds – Collectively called sulfa drugs • Inhibit growth of Gram + and Gram - organisms – Through competitive inhibition of enzyme that aids in production of folic acid • Structurally similar to para-aminobenzoic acid – Substrate in folic acid pathway • Human cells lack specific enzyme in folic acid pathway – Basis for selective toxicity • Resistance due to plasmid • Plasmid codes for enzyme that has lower affinity to drug
  • 54. • Inhibits folic acid production – Interferes with activity of enzyme following enzyme inhibited by sulfonamides • Often used synergistically with sulfonamide • Most common mechanism of resistance is plasmid encoded alternative enzyme – Genes encoding resistant to sulfonamide and trimethoprim are often carried on same plasmid Trimethoprim
  • 56. Interference with cell membrane integrity • Polymixn B most common • Binds membrane of Gram - cells – Alters permeability • Leads to leakage of cell and cell death – Also bind eukaryotic cells but to lesser extent
  • 57. Daptomycin’s Mechanism of Action • Irreversibly binds to cell membrane of Gram- positive bacteria – Calcium-dependent membrane insertion of molecule • Rapidly depolarizes the cell membrane – Efflux of potassium – Destroys ion-concentration gradient
  • 59. Bacterial Toxins • Not secreted but are components of the cell wall • Affect host when released from dead bacteria • Can bind macrophage, cause the release of fever-inducing agents • Resistant to heating
  • 61. 61
  • 64. Exotoxins • Pathogenic bacteria can produce exotoxins, which increase their success but tend to be very damaging to the host – Often the toxin, not the bacterial infection, is most dangerous – Examples: • Diphtheria toxin • Botulism toxin 64
  • 65. Summary of Virulence Determinants Of Staphylococcus aureus • http://textbookofbacteriology.net/staph.html http://textbookofbacteriology.net/staph.html
  • 67. 67
  • 68. Capsules and Pili • Many bacteria secrete a capsule, or slime layer – Used to attach, prevent phagocytosis – Can be used to enhance infective bacteria • Pili are hair-like appendages – Allow attachment to surfaces – Are sometimes involved in bacterial conjugation (sexual activity that involves the transfer of DNA)
  • 69. The Bacterial Flagellum • Rotates • Is corkscrew-shaped • Three parts: – Basal body – Hook – Filament (made of one protein: flagellin) • Cell uses ATP to pump protons out • Protons diffuse through membrane at basal body • Breakdown of gradient converted to rotation
  • 70. Bacterial Chromosome • Bacteria have a circular genomic DNA molecule - – Single chromosome – ~1000X longer than cell if stretched out • Also have plasmids – Small, circular DNA fragments – Can replicate independently of the genomic DNA or be integrated into genomic DNA – Carry genes for resistance, for genetic exchange or for enzymes
  • 71. Bacterial Sexual Reproduction • Most simply put, sex is transfer of genetic information. • Three mechanisms known for bacterial sexual reproduction: – Transformation • Bacteria take up DNA from environment • Griffith’s 1928 experiment with S and R bacteria showed that DNA was heritable substance – Transduction • Genes are transferred through phage (next slide) – Conjugation • Two cells of opposite mating type come together, form pili bridges bridges through which DNA is transferred
  • 72. Conjugation of E. coli hfr: high frequency recombination
  • 73. 73
  • 74. MECHANISMS OF ACTION OF ANTIBACTERIAL DRUGS • Inhibition of cell wall synthesis • Inhibition of protein synthesis • Inhibition of nucleic acid synthesis • Inhibition of metabolic pathways • Interference with cell membrane integrity