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In the Name of Allah,
the Most Beneficent, the Most Merciful.
Diagnosis of Aquaculture
       Diseases
Disease means…………deviation
from normal condition either
behavioral, structure or physiological
state
You must know normal condition to
detect abnormal one……
………….easily to be done by
continuous observation
The aim of diagnosis process to
determine the accurate cause of the
disease the select the proper treatment

The owner should be advised to bring
both the fish (live and freshly dead )
and a water sample in separate clean
containers.
Steps of diagnosis
• Case history
• Clinical signs
• PM exam
• Lab exam (Parasitological, Bacterial,
  Mycological, Virological and water quality)
• Histopathological exam
• Molecular methods to detect and
  characterize the agent’s nucleic acid
• Biological test
I – Case History
1)Fish
2)Environment
 A) Rearing unit
 B) Water
1)Fish
• Mortality
a) Recent rates           Water problem O2 or toxic




b) Time
   ….early                                        Has considerable morbidity

   morning or
   sudden
c) Species
                  Chronic or parasitic especially when affect some species




   involved
d) Size and age
   of dead fish
• All run facilities
b)Sudden change in routine
  management
b) Usual routine for feeding as well
  Change in diet quantity, quality or
  forms. (fry, fingerlings or broad
  stock). As well source and protein
  percentages.
c) prior treatments, including
medications, have been given.


• Abnormal behaviour or function
of fish
2) Environment

   A) Rearing unit
• Type, size and location of the
  facilities
2. System of fish management
3. Stocking rate /stocking time
4. Depth of water……….
5. Presence of aquatic plants or
  vegetations…O2
6. Presence of natural enemies
7. Habitat utilization …weeks ???
8. The surrounding of rearing unite
…human habituations, neighbor
infected farm
B) Water
1) Water source: sewages, underground water or surface water.
2) Water exchange rates
3) Physical examination of water
- color and transparency… algae…
- turbidity
- smell…..amonia…..organic
  matter
4) Chemical examination of water
-Dis O2
- Ammonia, nitrite,
- pH………..acidic……Branchyomycosis
- Hardness……….soft water……Dee
disease
- heavy metals
II-Clinical sign
   1- Behavioural Examination
       General Exploration

• If a client submits live fish to
  the clinic, aeration should be
  immediately placed into the
  container that holds the fish.
• (Examination of fish in water)
1- swimming and movement
2- escape reflex 3- sick fish easily caught
4- position of fish….TB
• flashing or itching (rubbing against objects
suggesting skin problems)
• piping (staying near the air - water interface to
obtain more oxygen, suggesting gill problems)
• Sick fish may exhibit other behavioral signs,
including staying near the surface of the water
= respiratory distress
• Extremely sick fish may be in dorsal or lateral
recumbency.
•scraping the body or holding the fins close to the
body ( “ clamped ” ) because of parasite irritation
•showing various behavioral abnormalities
•Sick fish often congregate together, separating
themselves from healthier
• Different fish species inhabit different parts of the
water column (surface, bottom, shoreline, etc.), and
this position often changes with sickness.
Clinical Examination
* Precautions during examinations
 1. Fish should be carefully handled
 2. Not allow fish to come in contact
    with hard objects that affect slim
 3. Examine fish on moist substances
 4. Examine in shade and avoid wind to
    prevent dryness
 5. You examine by naked eye, stereo
    microscope or magnifing lence.
2- External examination:
   - small fish can be examined at
moist palm, small plat
- large fish put on their right
side on moist glass or plastic
diaper. Put fish on their right
sides and held them by left
hands. Save eyes with palm of
hands and with other hands
support tail.
* Body inspection
1- color of the body
• Sick fish are often abnormally colored, compared
with the healthier
• Fish in breeding condition often have more brilliant colors than non
breeding fish
• Darkness over whole body…..chronic disease, bad water quality
- blacking of the tail and peduncle region…
Hemorrhagic lesions on body
                                        surface or fins…..




Reddening of the body is usually caused by hemorhage, which can result
from systemic bacterial or viral infections
- white spots
- Grayish patches……
Fin rot
Parasites or other irritating conditions may also elicit a thickening of the
skin, leading to a whitish or bluish skin color. This change might be
highly localized (pinpoint to larger foci) or cover nearly the entire body
local tissue irritation/damage, such as parasite feeding,
chronic wounds, or healing wounds, which cause a change in the
             pigment cell distribution at that site
5- abnormalities in the vertebral column, mandible, nose…
Streptococcus
      swollen vent, hemorrhage




8- abnormalities in anus, uorogenital opening or operculum
2- Erosions or ulcers
3- Exophthalmia of the eye……
4- parasite can be seen by naked eye……..
5- Distended abdomen or lost scales
Fluid filled body cavity- ascite
6. Necrosis- dead tissue within a living
  animal
9- fecal examination
• Anesthesia often causes involuntary defecation,
allowing the collection of a fecal sample
• Fecal material can be obtained by siphoning debris
from the bottom of the tank
III.PM exam
Next sections in
      details
Symptoms and signs of disease
Symptoms and signs of disease
Symptoms and signs of disease
Symptoms and signs of disease
Symptoms and signs of disease
Symptoms and signs of disease
7. Swollen kidney, liver, inflamed
   internal organs
SIGNS OF DISEASE
                       Brown gills


Pale gills




             Eroded gills/excess mucus
Dasyrhynchus sp.
Cestode larvae in jack
IV. Histopathology
Gill Histology: Normal
Special histological / Cytological
         techniques
1- Immunohistochemistry (IHC) /
  Immunofluorescent chemistry (IFC)
Enables identification of agent or altered cell
  receptor expression in relation to localization
  within the body and within the tissue and in
  relation to alterations in histomorphology.
  Therefore, it facilitates the understanding of
  potential pathogenicity.
3 - Electron microscopy
VI. Laboratory exam
(Parasitological, Bacterial, Mycological, Virological)

 Start by killing of the fish by one of the
 following methods
 1- cut spinal cord
 2- over dose of anesthesia
 3- electric current
 4- Catch the fish with dry towel and hit to hard
 object
 Not use chemicals in killing of fish especially in
 bacteriological examination
VII. Molecular methods
1. Polymerase chain reaction (PCR)
The PCR reaction is ideal for detecting the
presence of bacterial, viral, parasitic
(protozoal or metazoal), or fungal
pathogens. The principle of detection is to
attempt PCR with primers that are
complementary to a part of the genome of
the pathogen, but not of the host.
1.1. Conventional PCR protocols are for the
detection and identification of DNA
sequences
1.2. Real-time Taqman® PCR is a variation of
conventional PCR. This type of PCR can be
used to detect and quantify the load of an
infectious agent in clinical samples. It can
detect RNA or DNA sequences.
1.3. reverse transcriptase PCR (rtPCR)
protocols are for the detection and
identification of RNA sequences (RNA
viruses, bacteria).
General lines
1- DNA or RNA will be extracted from the samples
2- PCR reaction mix contains specific primers
3- replication in thermal cycler
4- The resulting PCR mix will be analyzed using
electrophoresis on a gel, to see if a band of the expected size
2. Restriction fragment length
     polymorphism (RFLP)/DNA
            fingerprinting
• Used to identify a change in the
genetic sequence. Can be used to
trace inheritance patterns, identify
specific mutations, and identify
bacterial strains
3. Microarray analysis
Used to detect gene expression. It
assesses the expression or activity
of a specific gene of an organism
by quantifying the amount of
mRNA the gene produces. not
commonly for the detection of
infectious agents.
4. In-situ hybridization (ISH)
 • Detects presence and location of
 nucleic acids within lesions in order to
 establish a link between infection and
 disease.
 • Based on identified labled nucleic
 acid prob on histological sections
 prepared by modified method.
• Stress may be a result of:
   1)   Poor water quality
   2)   Poor nutrition
   3)   ______________
   4)   Handling
   5)   ____________________

What causes fish to get sick?
• Fish are generally more vulnerable to
  disease outbreaks during summer
  months because:

  1)   _____________________
  2)   Dissolved oxygen
  3)   ______________________________
  4)   Disease organisms are more active at warm
       temperatures

          What causes fish to get sick?
Behavioral:
  1) Slowing or Cessation of Feeding
  2) __________________
  3) Abnormal Distribution
  4) __________________
  5) Lethargic Swimming

       Symptoms and signs of disease
Physical Symptoms and Signs
  •   I. Gross External Signs:
      1) Production of Excess Mucus
      2) _______________________
      3) Eroded Fins, Gills, and/or Sores on the Body
      4) _____________________________
      5) Swelling or Cysts on the Body, Head, or Fins
      6) _____________________________
      7) Hemorrhages on Body Surface



         Symptoms and signs of disease
Physical Symptoms and Signs
  •   II. Gross Internal Signs:
      1) Discoloration
      2) ______________________________
      3) Lesions
      4) Changes in texture of Organs, Tissues, and
         Musculature
      5) ________________________________
      6) ________________________________


          Symptoms and signs of disease
• Three major patterns:

  1) Mortality due to ______________
     ___________________
  3) Mortality due to ______________
    ___________________
  5) Mortality due to ______________
     __________________

              Mortality Patterns
Mortality(# fish)                   Mortality(# fish)
A.                                   B.



                                          1     12 24
     1     12 24                              Time (days)
         Time (hrs)

                      Mortality(# fish)
                       C.



                            1   12 24
                           Time (weeks)

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Diagnosis of fish diseases

  • 1. In the Name of Allah, the Most Beneficent, the Most Merciful.
  • 3. Disease means…………deviation from normal condition either behavioral, structure or physiological state You must know normal condition to detect abnormal one…… ………….easily to be done by continuous observation
  • 4. The aim of diagnosis process to determine the accurate cause of the disease the select the proper treatment The owner should be advised to bring both the fish (live and freshly dead ) and a water sample in separate clean containers.
  • 5.
  • 6. Steps of diagnosis • Case history • Clinical signs • PM exam • Lab exam (Parasitological, Bacterial, Mycological, Virological and water quality) • Histopathological exam • Molecular methods to detect and characterize the agent’s nucleic acid • Biological test
  • 7. I – Case History 1)Fish 2)Environment A) Rearing unit B) Water
  • 9.
  • 10. a) Recent rates Water problem O2 or toxic b) Time ….early Has considerable morbidity morning or sudden c) Species Chronic or parasitic especially when affect some species involved d) Size and age of dead fish
  • 11. • All run facilities b)Sudden change in routine management b) Usual routine for feeding as well Change in diet quantity, quality or forms. (fry, fingerlings or broad stock). As well source and protein percentages.
  • 12.
  • 13. c) prior treatments, including medications, have been given. • Abnormal behaviour or function of fish
  • 14. 2) Environment A) Rearing unit • Type, size and location of the facilities
  • 15. 2. System of fish management 3. Stocking rate /stocking time
  • 16. 4. Depth of water……….
  • 17. 5. Presence of aquatic plants or vegetations…O2
  • 18. 6. Presence of natural enemies
  • 19. 7. Habitat utilization …weeks ??? 8. The surrounding of rearing unite …human habituations, neighbor infected farm
  • 20. B) Water 1) Water source: sewages, underground water or surface water.
  • 21.
  • 22.
  • 23. 2) Water exchange rates 3) Physical examination of water - color and transparency… algae… - turbidity - smell…..amonia…..organic matter
  • 24.
  • 25. 4) Chemical examination of water -Dis O2 - Ammonia, nitrite, - pH………..acidic……Branchyomycosis - Hardness……….soft water……Dee disease - heavy metals
  • 26. II-Clinical sign 1- Behavioural Examination General Exploration • If a client submits live fish to the clinic, aeration should be immediately placed into the container that holds the fish. • (Examination of fish in water)
  • 27. 1- swimming and movement
  • 28. 2- escape reflex 3- sick fish easily caught 4- position of fish….TB
  • 29. • flashing or itching (rubbing against objects suggesting skin problems) • piping (staying near the air - water interface to obtain more oxygen, suggesting gill problems) • Sick fish may exhibit other behavioral signs, including staying near the surface of the water = respiratory distress • Extremely sick fish may be in dorsal or lateral recumbency.
  • 30.
  • 31. •scraping the body or holding the fins close to the body ( “ clamped ” ) because of parasite irritation •showing various behavioral abnormalities •Sick fish often congregate together, separating themselves from healthier • Different fish species inhabit different parts of the water column (surface, bottom, shoreline, etc.), and this position often changes with sickness.
  • 32. Clinical Examination * Precautions during examinations 1. Fish should be carefully handled 2. Not allow fish to come in contact with hard objects that affect slim 3. Examine fish on moist substances 4. Examine in shade and avoid wind to prevent dryness 5. You examine by naked eye, stereo microscope or magnifing lence.
  • 33. 2- External examination: - small fish can be examined at moist palm, small plat
  • 34. - large fish put on their right side on moist glass or plastic diaper. Put fish on their right sides and held them by left hands. Save eyes with palm of hands and with other hands support tail.
  • 35. * Body inspection 1- color of the body • Sick fish are often abnormally colored, compared with the healthier • Fish in breeding condition often have more brilliant colors than non breeding fish • Darkness over whole body…..chronic disease, bad water quality
  • 36. - blacking of the tail and peduncle region…
  • 37. Hemorrhagic lesions on body surface or fins….. Reddening of the body is usually caused by hemorhage, which can result from systemic bacterial or viral infections
  • 38.
  • 39.
  • 40.
  • 43.
  • 45. Parasites or other irritating conditions may also elicit a thickening of the skin, leading to a whitish or bluish skin color. This change might be highly localized (pinpoint to larger foci) or cover nearly the entire body
  • 46. local tissue irritation/damage, such as parasite feeding,
  • 47. chronic wounds, or healing wounds, which cause a change in the pigment cell distribution at that site
  • 48. 5- abnormalities in the vertebral column, mandible, nose…
  • 49.
  • 50. Streptococcus swollen vent, hemorrhage 8- abnormalities in anus, uorogenital opening or operculum
  • 51. 2- Erosions or ulcers
  • 52.
  • 53. 3- Exophthalmia of the eye……
  • 54.
  • 55.
  • 56. 4- parasite can be seen by naked eye……..
  • 57.
  • 58. 5- Distended abdomen or lost scales Fluid filled body cavity- ascite
  • 59.
  • 60. 6. Necrosis- dead tissue within a living animal
  • 61. 9- fecal examination • Anesthesia often causes involuntary defecation, allowing the collection of a fecal sample • Fecal material can be obtained by siphoning debris from the bottom of the tank
  • 63. Symptoms and signs of disease
  • 64. Symptoms and signs of disease
  • 65. Symptoms and signs of disease
  • 66. Symptoms and signs of disease
  • 67. Symptoms and signs of disease
  • 68. Symptoms and signs of disease
  • 69. 7. Swollen kidney, liver, inflamed internal organs
  • 70. SIGNS OF DISEASE Brown gills Pale gills Eroded gills/excess mucus
  • 74. Special histological / Cytological techniques 1- Immunohistochemistry (IHC) / Immunofluorescent chemistry (IFC) Enables identification of agent or altered cell receptor expression in relation to localization within the body and within the tissue and in relation to alterations in histomorphology. Therefore, it facilitates the understanding of potential pathogenicity. 3 - Electron microscopy
  • 75. VI. Laboratory exam (Parasitological, Bacterial, Mycological, Virological) Start by killing of the fish by one of the following methods 1- cut spinal cord 2- over dose of anesthesia 3- electric current 4- Catch the fish with dry towel and hit to hard object Not use chemicals in killing of fish especially in bacteriological examination
  • 76. VII. Molecular methods 1. Polymerase chain reaction (PCR) The PCR reaction is ideal for detecting the presence of bacterial, viral, parasitic (protozoal or metazoal), or fungal pathogens. The principle of detection is to attempt PCR with primers that are complementary to a part of the genome of the pathogen, but not of the host.
  • 77. 1.1. Conventional PCR protocols are for the detection and identification of DNA sequences 1.2. Real-time Taqman® PCR is a variation of conventional PCR. This type of PCR can be used to detect and quantify the load of an infectious agent in clinical samples. It can detect RNA or DNA sequences. 1.3. reverse transcriptase PCR (rtPCR) protocols are for the detection and identification of RNA sequences (RNA viruses, bacteria).
  • 78. General lines 1- DNA or RNA will be extracted from the samples 2- PCR reaction mix contains specific primers 3- replication in thermal cycler 4- The resulting PCR mix will be analyzed using electrophoresis on a gel, to see if a band of the expected size
  • 79. 2. Restriction fragment length polymorphism (RFLP)/DNA fingerprinting • Used to identify a change in the genetic sequence. Can be used to trace inheritance patterns, identify specific mutations, and identify bacterial strains
  • 80. 3. Microarray analysis Used to detect gene expression. It assesses the expression or activity of a specific gene of an organism by quantifying the amount of mRNA the gene produces. not commonly for the detection of infectious agents.
  • 81. 4. In-situ hybridization (ISH) • Detects presence and location of nucleic acids within lesions in order to establish a link between infection and disease. • Based on identified labled nucleic acid prob on histological sections prepared by modified method.
  • 82. • Stress may be a result of: 1) Poor water quality 2) Poor nutrition 3) ______________ 4) Handling 5) ____________________ What causes fish to get sick?
  • 83. • Fish are generally more vulnerable to disease outbreaks during summer months because: 1) _____________________ 2) Dissolved oxygen 3) ______________________________ 4) Disease organisms are more active at warm temperatures What causes fish to get sick?
  • 84. Behavioral: 1) Slowing or Cessation of Feeding 2) __________________ 3) Abnormal Distribution 4) __________________ 5) Lethargic Swimming Symptoms and signs of disease
  • 85. Physical Symptoms and Signs • I. Gross External Signs: 1) Production of Excess Mucus 2) _______________________ 3) Eroded Fins, Gills, and/or Sores on the Body 4) _____________________________ 5) Swelling or Cysts on the Body, Head, or Fins 6) _____________________________ 7) Hemorrhages on Body Surface Symptoms and signs of disease
  • 86. Physical Symptoms and Signs • II. Gross Internal Signs: 1) Discoloration 2) ______________________________ 3) Lesions 4) Changes in texture of Organs, Tissues, and Musculature 5) ________________________________ 6) ________________________________ Symptoms and signs of disease
  • 87. • Three major patterns: 1) Mortality due to ______________ ___________________ 3) Mortality due to ______________ ___________________ 5) Mortality due to ______________ __________________ Mortality Patterns
  • 88. Mortality(# fish) Mortality(# fish) A. B. 1 12 24 1 12 24 Time (days) Time (hrs) Mortality(# fish) C. 1 12 24 Time (weeks)

Hinweis der Redaktion

  1. FNR 251 01/30/2007
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