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Bacterial Meningitis Diagnosis
1.
Bacterial Meningitis
2.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers INTRODUCTION ▰ Meningitis is a life-threatening infection of the leptomeninges (arachnoid and pia mater) surrounding the brain and spinal cord, with involvement of the subarachnoid space. The disease can be ▰ Caused by several pathogens including bacteria, viruses, fungi or parasites. ▰ Highest global burden is seen with bacterial meningitis. 2
3.
ACUTE BACTERIAL MENINGITIS 3
4.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers ACUTE BACTERIAL MENINGITIS ▰ Acute bacterial meningitis (also called as pyogenic meningitis), is an acute purulent infection within the subarachnoid space. It is ▰ Characterized by elevated polymorphonuclear cells in CSF. 4
5.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers ACUTE BACTERIAL MENINGITIS (Cont..) ▰ Agents implicated in pyogenic meningitis - vary according to the age. ▰ Overall: Streptococcus pneumoniae - most common. Other agents include meningococcus, Streptococcus agalactiae, Listeria and Haemophilus influenzae. 5
6.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers ACUTE BACTERIAL MENINGITIS (Cont..) ▰ Neonates: Streptococcus agalactiae, gram-negative bacilli - Escherichia coli and Klebsiella, and Listeria monocytogenes. ▰ Elderly (>60 years): Streptococcus agalactiae and Listeria monocytogenes. 6
7.
PATHOGENESIS 7
8.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers PATHOGENESIS ▰ Transmitted from person-to-person through droplets of respiratory secretions from cases or nasopharyngeal carriers. ▰ Close and prolonged contact—kissing, sneezing or coughing on someone - with an infected person facilitate the spread of the disease. 8
9.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Routes of Infection ▰ Hematogenous spread ▰ Direct spread from an infected site ▰ Anatomical defect in central nervous system (CNS) 9
10.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Predisposing Factors ▰ Age: Neonates have the highest prevalence of meningitis ▰ Vaccination: Widespread vaccination is shown to reduce the incidence of meningitis ▰ Factors that promote infection at primary site: Because respiratory tract is the primary portal of entry for many etiological agents of meningitis 10
11.
CLINICAL MANIFESTATIONS 11
12.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CLINICAL MANIFESTATIONS ▰ Average incubation period - 4 days, range 2 and 10 days. ▰ Important symptoms - fever, vomiting, intense headache, altered consciousness and occasionally photophobia. ▰ Signs of meningism (meningeal irritation): Nuchal rigidity (“stiff neck”) Kernig’s sign Brudzinski’s sign 12
13.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Signs seen in meningitis 13 A. Kernig’s sign; B. Brudzinski’s sign.
14.
LABORATORY DIAGNOSIS 14
15.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Specimen Collection and Transport ▰ CSF - most ideal specimen for pyogenic meningitis. ▰ Blood culture - another useful specimen for culture. ▰ CSF collection: Lumbar puncture under strict aseptic conditions. ▰ It is divided into three sterile containers; one each for cell count, biochemical analysis and bacteriological examination 15
16.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Specimen Collection and Transport (Cont..) ▰ CSF transport: Should be examined immediately ▰ When the bacteriological examination (culture) is required - CSF should never be refrigerated - if a delay is expected - kept in an incubator at 37°C. ▰ For molecular diagnosis - CSF can be kept inside the freezer. 16
17.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Cytological and Biochemical Analysis 17 Characteristics Normal individual Pyogenic meningitis Tuberculous meningitis Viral meningitis CSF pressure (mm of water) Normal (50–150) Highly elevated (>180) Moderately elevated Slightly elevated/normal Total leukocyte count (per mm3) 0–5 100–10,000 10–500 25–500 Predominant cell type Lymphocytes Neutrophils Lymphocytes Lymphocytes Glucose (mg%) 40–70 <40 mg/dL (decreased to absent) 20–40 mg/dL (slightly decreased) Normal Total proteins (mg%) 15–45 >45 mg/dL (usually >250; markedly increased) 100–500 mg/dL (moderate to markedly increased) 20–80 mg/dL (normal or slightly elevated)
18.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CSF Microscopy (Gram Staining) 18 Appearance in CSF gram stain Suggestive of Gram-positive cocci in pair, capsulated, flame or lanceolate-shaped Gram-positive diplococci, flame or lanceolate-shaped with clear halo (capsulated) Streptococcus pneumoniae Gram-negative diplococci, capsulated, with adjacent sides flattened (lens or half-moon shaped) Neisseria meningitidis Pleomorphic gram-negative coccobacilli, capsulated Haemophilus influenzae Gram-negative bacilli, arranged singly Escherichia coli or others Gram-positive cocci in short chain Streptococcus agalactiae Gram-positive short bacilli Listeria monocytogenes
19.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Direct Antigen Detection ▰ From CSF: After centrifugation – supernatant - used for antigen detection. Latex agglutination test - performed using latex beads coated with anti- capsular antibodies ▰ From urine: Useful for pneumococcal meningitis. Immunochromatographic test (ICT) - detect the C-polysaccharide antigen of S. pneumoniae in urine 19
20.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture ▰ Ideal media for bacteriological culture of CSF are enriched media like chocolate agar and blood agar, and differential media like MacConkey agar ▰ Enriching: As the bacterial load is very low - part of the CSF - inoculated into enriched media - blood culture bottles at the bed side (preferred) or brain heart infusion (BHI) broth in the laboratory 20
21.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture (Cont..) ▰ Blood culture can be collected in conventional blood culture bottles - BHI broth/agar or preferably in automated blood cultures (e.g. BacT/ALERT) ▰ Culture plates (blood agar and chocolate agar) are incubated at 37°C, preferably in candle jar (provides 5% CO2) for 48 hours 21
22.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture and identification properties of common bacterial agents of pyogenic meningitis 22 Streptococcus pneumoniae Culture: It produces α-hemolytic colonies on blood agar, described as draughtsman-shaped or carrom coin appearance Biochemical identification: It shows bile soluble, ferments inulin and sensitive to optochin Neisseria meningitidis It produces non- hemolytic colonies on blood agar, which on smear shows gram-negative diplococci Biochemical identification: Meningococci are catalase and oxidase positive. They ferment glucose and maltose but not sucrose Serogrouping: Slide agglutination serogrouping (SASG) test is done to identify the serogroups of meningococci isolates by using appropriate antisera
23.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture and identification properties of common bacterial agents of pyogenic meningitis (Cont..) 23 Haemophilus influenzae Culture: Blood agar with S. aureus streak line shows satellitism. Biochemical identification: Disk test for X and V factor requirement shows growth surrounding combined XV disk Streptococcus agalactiae Culture: It produces β-hemolytic colonies on blood agar, which on smear shows gram-positive cocci in short chain Biochemical identification: It shows CAMP test positive and resistance to bacitracin Serogrouping with group specific antisera shows Lancefield group B
24.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture and identification properties of common bacterial agents of pyogenic meningitis (Cont..) 24 Gram-negative bacilli meningitis Escherichia coli and Klebsiella produce lactose-fermenting colonies on MacConkey agar; identified by ICUT tests Non-fermenters: Pseudomonas is oxidase positive, whereas Acinetobacter is oxidase negative. They produce non-lactose fermenting colonies; identified by ICUT tests Listeria monocytogenes Motility: It shows tumbling type of motility at 25°C but nonmotile at 37°C (called differential motility, which is due to temperature dependent flagella expression) Culture: It grows on blood agar (β-hemolytic colonies), and chocolate agar. Note: Selective media such as PALC AM agar (containing mixture of antibiotics) may be useful for isolation of Listeria from specimens such as food and environmental samples.
25.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Culture (Cont..) ▰ Antimicrobial susceptibility test: done to initiate definitive antimicrobial therapy. ▰ Sensitivity: CSF and blood cultures - take >48 hours for identification – Sensitivity drops rapidly - prior antimicrobial therapy or delay in processing ▰ Rapid diagnostic tests: antigen detection or molecular test - considered to determine the bacterial etiology of pyogenic meningitis. 25
26.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Serology ▰ Antibodies to capsular antigens of meningococci - detected in patient’s serum by ELISA. ▰ Useful to study sero prevalence and to know the response to vaccination; not for diagnosis. 26
27.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Molecular Methods ▰ Molecular tests - highly sensitive, detect even few bacteria in CSF with less turnaround time than culture and also help in serogroup identification. ▰ Multiplex PCR and multiplex real-time PCR. ▰ BioFire FilmArray 27
28.
Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Pyogenic meningitis ▰ The mortality of pyogenic meningitis is very high (~20% for pneumococci) and among the survivors, up to 50% develop complications - treatment should be initiated as early as possible. ▰ The choice of antimicrobial agent - based on the type of organism suspected and good CSF penetration ability of the agent 28
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Essentials of Medical
Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Pyogenic meningitis (Cont.. ) ▰ Empirical therapy comprises of: ▰ Adult: IV cefotaxime or ceftriaxone and vancomycin. If Listeria is suspected, IV ampicillin - added to the regimen ▰ For neonates: IV ampicillin plus gentamicin ▰ IV dexamethasone - added to the regimen to reduce intracranial pressure. 29
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Pyogenic meningitis (Cont.. ) ▰ Definitive therapy: ▰ After the culture report is available - empirical therapy is modified based on the organism isolated and its antimicrobial susceptibility pattern 30
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AGENTS OF PYOGENIC MENINGITIS 31
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Pneumococcal Meningitis ▰ Streptococcus pneumoniae (or pneumococcus) - leading cause of meningitis in adults (>20 years of age), ▰ Also the most common agent of pneumonia. ▰ Present as commensals in human nasopharynx - spread locally to cause otitis media or pneumonia – bloodstream to distant sites - invasive pneumococcal disease - bacteremia and meningitis 32
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Pneumococcal Meningitis (Cont..) ▰ Principle virulence factors – capsular polysaccharide, C-carbohydrate antigen, pneumolysin and autolysin. ▰ Risk factors: Underlying pneumococcal pneumonia (most important) or otitis media, alcoholism, diabetes, splenectomy, complement deficiency, hypogammaglobulinemia, and head trauma 33
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Meningococcal Meningitis ▰ Caused by Neisseria meningitidis (or meningococcus) - capsulated gram-negative diplococci with adjacent sides flattened (lens-shaped/half-moon shaped) 34
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Meningococcal Meningitis (Cont..) ▰ N. gonorrhoeae - causes gonorrhea. ▰ Other species are commensals of the genital tract or oral cavity - N. lactamica, N. flavescens, N. mucosa, N. sicca, N. subflava, etc.; although they can be occasionally pathogenic to humans. 35
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Differences between Neisseria meningitidis and Neisseria gonorrhoeae 36 N. meningitidis N. gonorrhoeae Capsulated Noncapsulated Lens-shaped/half moon-shaped (diplococci with adjacent sides flattened) Kidney-shaped (diplococci with adjacent sides concave) Ferments glucose and maltose Ferments only glucose Rarely have plasmids Usually possess plasmids, coding for drug-resistant genes Exist in both intra- and extracellular forms Predominantly exist in intracellular form Habitat—nasopharynx Habitat—genital tract (urethra, cervix), rarely pharynx
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Virulence Factors Capsular Polysaccharide: ▰ 13 serogroups - A, B, C, X, Y & W135 - account for the majority of cases of invasive disease. ▰ Other capsular serogroups and noncapsulated meningococci - commonly colonize the nasopharynx of asymptomatic carriers 37
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Pathogenesis ▰ Source – Only Humans, nasopharyngeal carriers (mainly children) – MC ▰ Mode of transmission- droplet inhalation portal of entry - nasopharynx 38
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Pathogenesis (Cont..) ▰ Spread of infection from nasopharynx to meninges Hematogenous route causing septicemia (most common) Direct spread along olfactory nerve through cribriform plate Through conjunctiva - rare 39
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations ▰ Rashes: A non-blanching rash (petechial or purpuric) – 80% ▰ Septicemia - endotoxin induced endothelial injury - increased vascular permeability and intravascular thrombosis ▰ Waterhouse–Friderichsen syndrome - fulminant meningococcemia - large purpuric rashes, shock, DIC, bilateral adrenal hemorrhage and multiorgan failure 40
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations (Cont..) ▰ Pyogenic meningitis 3–5 years of age - fever, vomiting, headache, neck ▰ Chronic meningococcemia – rare - repeated episodes of petechial rash, fever, arthritis, and splenomegaly ▰ Postmeningococcal reactive disease - Immune complexes develop 4–10 days later - arthritis, rash, iritis, pericarditis, polyserositis, and fever 41
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Meningococcal meningitis ▰ Third-generation cephalosporins – DOC ▰ Penicillin can also be given; however, reduced sensitivity reported from few countries ▰ Symptomatic treatment - aggressive fluid resuscitation (for shock) and measures to decrease intracranial pressure. 42
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Chemoprophylaxis ▰ Indicated to the close contacts of primary cases. ▰ Close contacts - household contacts and others who are directly exposed to patient’s oral secretions, in the 7 days before symptom onset. ▰ Ceftriaxone (single dose, IM) - drug of choice ▰ Alternatively, rifampicin or ciprofloxacin can be given. 43
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Vaccine Prophylaxis ▰ Polysaccharide vaccine: Bivalent (A & C) or Quadrivalent (A,C,Y, & W135) Two doses - children of 3–18 months Single dose to > 2 yrs Efficacy >95% Duration of protection - 3–5 years 44
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Vaccine Prophylaxis (Cont..) ▰ Capsular vaccine is not available for serogroup B as: Capsule of serogroup B (made up of sialic acid) is less immunogenic Encephalitogenic due to expression of similar cross reactive antigens on neural cells. Not given below 3 years 45
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Vaccine Prophylaxis (Cont..) Conjugated vaccine: ▰ Given to young children. ▰ Addition of a protein carrier (adjuvant) increases the immunogenicity of the capsular vaccine. 46
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Haemophilus influenzae Meningitis ▰ Virulence factor: Capsular polysaccharide - acts by inhibiting phagocytosis ▰ Hib: Out of the six capsular serotypes, H. influenzae serotype b (Hib) - most virulent types – responsible for pneumonia - spread by hematogenous route - meningitis 47
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Haemophilus influenzae Meningitis (Cont..) ▰ CNS infections: Pyogenic meningitis: Children less than 2 years of age Subdural effusion: Common complication following meningitis - seizures or hemiparesis Mortality rate - high if untreated. 48
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Group B Streptococcal (S. agalactiae meningitis) ▰ Major cause of neonatal sepsis and meningitis. ▰ Early-onset: Occurs in the first week of life , transmission of organism from the maternal genital tract during or before birth ▰ Late-onset: Occurs from 7-90 days of birth, transmitted by contact with a colonized mother or nursing personnel. 49
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Group B Streptococcal meningitis ▰ Meningitis should be treated with penicillin for a duration of 14 days, as shorter courses may lead to relapse. 50
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Gram-negative Bacilli Meningitis ▰ Gram-negative bacilli cause meningitis in individuals with chronic and debilitating diseases - diabetes, cirrhosis, or alcoholism and in those with chronic UTI. ▰ Gram-negative meningitis - occur secondary to neurosurgical procedures, particularly craniotomy, and head trauma with CSF rhinorrhea or otorrhea. 51
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Gram-negative Bacilli Meningitis (Cont..) ▰ Escherichia coli and Klebsiella – common cause of pyogenic meningitis in neonates ▰ Pseudomonas - meningitis in postoperative or post-traumatic patients (head trauma with CSF rhinorrhea or otorrhea) ▰ Acinetobacter – postneurosurgical meningitis ▰ Elizabethkingia meningosepticum – meningitis in neonates. 52
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Listeriosis ▰ Caused by Listeria monocytogenes - food-borne pathogen that can cause serious infections, particularly in neonates, pregnant women and elderly people. ▰ Also a ubiquitous saprophyte, known to cause epizootic disease in birds and animals 53
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Human Infection ▰ Mode of transmission: through contaminated food, vertical transmission. ▰ Age: Extremes of age (neonate and old age) ▰ Use of proton pump inhibitors increases risk ▰ Other risk factors: Pregnant women & immunocompromised individuals 54
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations ▰ Depends on the age of the patient and other risk factors ▰ Common serotypes 1/2a,1/2b & 4 ▰ Neonatal listeriosis: early-onset and late-onset neonatal disease ▰ In pregnant women: Fetal complications - abortion, preterm delivery - early onset disease Maternal complications - flu-like symptoms, bacteremia and rarely meningitis 55
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations (Cont..) ▰ Adults: Bacteremia and meningitis Risk factors - immunosuppression (steroid therapy, HIV, diabetes, malignancy) Gastroenteritis following consumption of contaminated milk, meat and salads. 56
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Listeriosis ▰ Meningitis: Ampicillin - drug of choice, given for 2–3 weeks in combination with gentamicin for synergistic effect ▰ Cotrimoxazole is given for patients with penicillin allergy ▰ In febrile gastroenteritis - Amoxicillin is recommended in immunocompromised, elderly or pregnant patients. 57
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Staphylococcal meningitis ▰ S. aureus and coagulase-negative staphylococci – cause meningitis following invasive neurosurgical procedures, particularly ventricular shunting 58
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CHRONIC BACTERIAL MENINGITIS 59
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CHRONIC BACTERIAL MENINGITIS ▰ Bacterial agents causing chronic meningitis include the following: Partially treated pyogenic meningitis Parameningeal infections (e.g. otitis media) Mycobacterium tuberculosis Borrelia burgdorferi (Lyme disease) Treponema pallidum (tertiary syphilis) Rare bacterial agents - Nocardia, Actinomyces, Tropheryma whipplei, Leptospira and Brucella 60
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations ▰ Persistent headache and neck or back pain/stiffness (similar to pyogenic meningitis) ▰ Hydrocephalus: Accumulation of CSF - ventricles - increased pressure inside the skull ▰ Cranial neuropathies: Facial weakness, double vision, diminished vision, papilledema, optic atrophy, hearing loss 61
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations (Cont..) ▰ Myelopathy or radiculopathy: Leads to arm or leg weakness or numbness, urinary retention/incontinence ▰ Changes in the personality - altered mental status—drowsiness, inattention, disorientation, and memory loss 62
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AGENTS OF CHRONIC MENINGITIS 63
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Mycobacterium tuberculosis Infections of CNS ▰ Tuberculosis of the CNS - ~5% of extrapulmonary cases. It is ▰ Seen most often in young children but also develops in adults - infected with HIV. ▰ Presents in two clinical forms: tuberculous meningitis and tuberculoma. 64
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Tuberculous Meningitis (TBM) ▰ TBM results from the hematogenous spread of primary or post-primary pulmonary TB. ▰ Disease evolves over 1–2 weeks or longer 65
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Features ▰ Headache, slight mental changes, low-grade fever, malaise, night sweat, anorexia, and irritability. ▰ Evolve acutely with severe headache, confusion, lethargy, altered sensorium, and neck rigidity ▰ Cranial nerves paresis (ocular nerves in particular) - frequent finding. 66
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Features (Cont..) ▰ Stroke - due to involvement of cerebral arteritis ▰ Ultimately - progresses towards coma, with hydrocephalus and intracranial hypertension. 67
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis CSF analysis: ▰ High leukocyte count (up to 1,000/μL), mostly lymphocytic. ▰ Neutrophils – elevated in the early stage ▰ Protein content of 100–800 mg/dL ▰ Low glucose concentration. 68
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis (Cont..) ▰ Cobweb coagulum: When CSF is kept in a tube for 12 hours - coagulum forms in the form of a cobweb - higher fibrin content in the fluid ▰ Acid-fast staining of CSF: Direct smear of CSF sediment - long slender beaded acid-fast bacilli. 69
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis (Cont..) ▰ Culture of CSF - Gold standard test. Time consuming, takes 4–8 weeks by Lowenstein-Jensen medium and 2-3 weeks by automated liquid culture - Mycobacteria Growth Indicator Tube (MGIT). ▰ GeneXpert assay: Automated real-time PCR, sensitivity of up to 80% 70
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis (Cont..) ▰ Imaging studies (CT and MRI) – hydrocephalus and abnormal enhancement of basal cisterns 71
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Tuberculous meningitis ▰ Treatment - initiated immediately upon a positive GeneXpert MTB/RIF result. ▰ Negative result does not exclude a diagnosis of TB and requires further diagnostic workup ▰ Responds well to anti-tubercular therapy, if started early. ▰ Adjunctive glucocorticoids - used to reduce the CSF pressure, resulting in faster resolution 72
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Tuberculoma (or Tuberculous Granulomas) ▰ Uncommon manifestation of tubercular infection of CNS; presents as space-occupying lesions (firm nodule with central caseous necrosis) - causes seizures and focal signs. ▰ CT or MRI - contrast-enhanced ring lesions, but biopsy is necessary to establish the diagnosis and to differentiate it from malignancies. 73
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Neuroborreliosis (Lyme Disease) ▰ Lyme disease - caused by Borrelia burgdorferi, transmitted by tick bite. ▰ Cutaneous lesions and arthritis; CNS infections. ▰ Manifestations: Meningitis, subtle encephalitic signs, cranial neuritis (including bilateral facial palsy), and radiculoneuropathy. 74
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Neuroborreliosis (Lyme Disease) (Cont..) ▰ Treatment: IV ceftriaxone for 14–28 days ▰ Alternatively IV cefotaxime or IV penicillin G can be given 75
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Neurosyphilis (Treponema pallidum) ▰ Neurosyphilis - tertiary form of syphilis - develops in about10% of untreated patients. ▰ Sexually transmitted disease ▰ Invasion of CNS - early within first few weeks of infection, followed by years of asymptomatic period. 76
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis ▰ CSF analysis: Increased lymphocytes (>5/μL), and increased protein level (>45 mg/dL) ▰ CSF VDRL test: Nontreponemal test, detects antibodies against cardiolipin antigen derived from bovine heart. ▰ FTA-ABS test (fluorescent treponemal antibody absorption) ▰ PCR-based tests 77
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Neurosyphilis ▰ Aqueous crystalline or procaine penicillin G is given for 10– 14 days for neurosyphilis ▰ Re-treatment if non-treponemal titres in CSF do not decrease by four-folds within 2 years of completion of treatment ▰ Patients with penicillin allergy, desensitization to penicillin has to be done, following which penicillin is administered. 78
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VIRAL MENINGITIS 79
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers VIRAL MENINGITIS ▰ Viral meningitis, inflammation of subarachnoid space due to viral etiology. ▰ Second most common type of meningitis, next to acute bacterial meningitis. ▰ Often less severe than bacterial meningitis. ▰ Better prognosis. 80
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers ETIOLOGY ▰ Enteroviruses - most common cause of viral meningitis. ▰ Other less common viral agents are: Herpesviruses Arboviruses LCM virus Other causes: Mumps virus, measles virus, influenza virus and human immunodeficiency virus (HIV). 81
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CLINICAL MANIFESTATIONS ▰ Common symptoms in children and adults - fever, headache (frontal or retro-orbital), stiff neck (milder than bacterial meningitis), photophobia, sleepiness or trouble in waking up from sleep, nausea, irritability, vomiting, lack of appetite (poor eating in babies), and lethargy. 82
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LABORATORY DIAGNOSIS 83
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CSF Analysis (Cytological and Biochemical) ▰ Normal or slightly elevated protein level (20–80 mg/dL) ▰ Normal glucose level ▰ Normal or mildly elevated CSF pressure (100–350 mm H2O) ▰ Cell count - 25–500/μL, in some viral meningitis (e.g. LCM virus and mumps) the cell counts of several thousands/μL may be seen. 84
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers CSF Analysis (Cytological and Biochemical) (Cont..) ▰ Pleocytosis: Lymphocytes – predominant cell type, although neutrophils may predominate in the first 48 h of illness in some viral meningitis (e.g. West Nile virus) ▰ Organisms are not seen on Gram staining of CSF. 85
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Molecular Methods ▰ Amplification of specific viral DNA or RNA from CSF by PCR ▰ PCR of throat washings or stool specimen - enterovirus infections ▰ Formats: Multiplex PCR and multiplex real-time PCR ▰ BioFire FilmArray 86
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Viral Culture ▰ Sensitivity of CSF cultures - generally poor. ▰ In addition to CSF, specific viruses – isolated from throat swabs, stool, blood, and urine ▰ Isolation of enteroviruses from stool – not diagnostic 87
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Oligoclonal Gamma Globulin Bands ▰ They may be detected in CSF in a number of viral infections. ▰ Can also be raised in other conditions – Lyme disease and multiple sclerosis. 88
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Treatment of Viral meningitis ▰ Primarily symptomatic - use of analgesics, antipyretics, antiemetics and fluid and electrolyte replacement. ▰ Oral or intravenous acyclovir - HSV-1 or 2 , severe EBV or VZV infection ▰ Patients with HIV meningitis - highly active antiretroviral therapy. 89
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AGENTS CAUSING VIRAL MENINGITIS 90
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Non-polio Enterovirus Infections ▰ Non-polio enteroviruses - most common cause of viral meningitis. ▰ Cases - sporadic or occur in clusters ▰ Examples - Coxsackieviruses, echoviruses, parechoviruses and Enterovirus 71. 91
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Taxonomy (Picornaviridae) (Cont..) Enteroviruses : ▰ Transmitted by feco-oral route. ▰ Multiply in the intestine - do not cause any intestinal manifestations. ▰ Associated with various systemic manifestations ▰ Divided into several (>115) human serotypes 92
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Taxonomy (Picornaviridae) (Cont..) Enteroviruses (Cont..) : ▰ Polioviruses—cause myelitis ▰ Coxsackieviruses, echoviruses, parechoviruses and Enterovirus 71— cause aseptic meningitis 93
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Taxonomy (Picornaviridae) (Cont..) Rhinoviruses : ▰ Comprise of >100 antigenic types. ▰ Transmitted by respiratory route and cause common cold 94
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Coxsackieviruses ▰ Coxsackieviruses (named after the place of discovery; Coxsackie village in USA). ▰ Divided into two groups, A and B, based on their pathogenic potentials for suckling mice. ▰ Serotypes- Coxsackieviruses group A are typed into serotypes 1–24 (except 15, 18 and 23) and group B are typed into serotypes 1–6. 95
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations ▰ Coxsackieviruses - spread through an infected person’s nasal and throat secretions, fluid from blisters or scabs. ▰ Produce a variety of clinical illnesses in humans associated with different serotypes. ▰ Incubation period - 2 to 9 days. 96
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations (Cont..) ▰ Aseptic meningitis ▰ Herpangina ▰ Hand-foot-and-mouth disease ▰ Pleurodynia (also known as Bornholm disease or epidemic myalgia) ▰ Cardiac: Myocarditis and pericarditis ▰ Respiratory: Coxsackieviruses A and B - associated with common colds 97
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Clinical Manifestations (Cont..) ▰ Acute hemorrhagic conjunctivitis: Caused by coxsackievirus A24 and enterovirus 70. ▰ Generalized disease of infants ▰ Pancreatitis leading to juvenile diabetes mellitus 98
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis ▰ Specimen collection: Throat swabs, stool and CSF. ▰ Isolation of the Virus- Coxsackie viruses can be recovered by Intra- cerebral inoculation into suckling mice- Coxsackie - A produce flaccid paralysis Coxsackie - B produce spastic paralysis 99
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Laboratory Diagnosis (Cont..) ▰ Inoculating into tissue culture - Cytopathic effect can be observed within 5-14 days. ▰ PCR targeting specific genes (e.g. VP1) is highly useful as it is rapid, more sensitive and serotype-specific ▰ Serology is performed to detect neutralizing antibodies. 100
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Echoviruses ▰ Echoviruses (enteric cytopathogenic human orphan viruses) infect humans by feco-oral route. ▰ Echoviruses - further typed into serotypes 1–33 (there are no types—8, 10, 22, 23 or 34), but not all cause human illness. ▰ Associated with aseptic meningitis, encephalitis, rashes, common cold, and ocular disease 101
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Parechoviruses ▰ Parechoviruses have 16 serotypes: ▰ 1. Serotype 1 and 2 - classified as echoviruses 22 and 23 respectively ▰ 2. Their capsid consists of three viral proteins ▰ 3. Rarely associated with aseptic meningitis, respiratory and neonatal diseases. 102
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Enterovirus 71 ▰ Enterovirus 71 - caused large epidemic of meningitis in Southeast Asia. ▰ Also cause encephalitis, hand-foot-and-mouth disease and herpangina (similar to coxsackieviruses) and paralysis resembling poliomyelitis. 103
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Herpesvirus Meningitis ▰ A number herpesviruses can cause meningitis. ▰ Common agents are herpes simplex viruses, varicella zoster virus (VZV) and Epstein-Barr virus (EBV) ▰ Rare causes - cytomegalovirus and human herpesvirus 6. 104
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers HSV Meningitis ▰ Herpes simplex viruses (HSV) - second most common cause of viral meningitis, next to enteroviruses. ▰ Adults are commonly affected than children. ▰ HSV-2 - more frequent cause of meningitis than HSV-1. 105
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers HSV Meningitis (Cont..) ▰ Other neurological manifestations caused by HSV: HSV encephalitis Bell’s palsy Autonomous system involvement Transverse myelitis Guillain-Barre syndrome Peripheral nervous system involvement 106
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Other Herpesviruses ▰ VZV meningitis ▰ EBV meningitis 107
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Arboviral Meningitis ▰ The encephalitic arboviruses - sometime cause meningitis, especially in individuals – recently travelled to the areas where these viruses are endemic. ▰ Transmitted by the bite of their arthropod vectors. West Nile virus Saint Louis encephalitis virus Tick-borne encephalitis California encephalitis virus 108
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers HIV Meningitis ▰ Meningitis in HIV infection may occur following primary infection in 5–10% of cases and less commonly at later stages of illness. ▰ Cranial nerve palsies - involving cranial nerves V, VII, or VIII, are more common in HIV meningitis than in other viral infections. 109
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers Mumps Meningitis ▰ Mumps mainly cause parotitis. ▰ Meningitis in mumps - secondary to parotitis. ▰ Mumps meningitis - more common in the late winter or early spring, especially in unvaccinated children with a male preponderance. 110
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Microbiology by Apurba S Sastry © Jaypee Brothers Medical Publishers LCM Virus Meningitis ▰ Lymphocytic choriomeningitis (LCM) virus affects people with history of contact with rodent droppings or urine. ▰ Some patients have an associated rash, pulmonary infiltrates, alopecia, parotitis, orchitis, or myopericarditis. 111
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