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Ion Torrent
The Chip is the Machine
                      ™



Ion Torrent
The Chip is the Machine




scalability
simplicity
speed
Scalability
                                          massively scalable semiconductor technology




                                          Simplicity
                                          natural biochemistry, no optical components




                                          Speed
                                          runs in about two hours, not days or weeks




Discover Ion Torrent
The Ion Personal Genome Machine™ (PGM™) is simpler, more cost-effective, and more scalable than any other sequencing
technology. The PGM™ sequencer is a benchtop system utilizing groundbreaking and disruptive semiconductor technology
that enables rapid and scalable sequencing experiments.

Ion Torrent technology uses a massively parallel array of proprietary semiconductor sensors to perform direct, real-time
measurement of the hydrogen ions produced during DNA replication. A high-density array of wells on the Ion semicon-
ductor chips provides millions of individual reactors, and integrated fluidics allow reagents to flow over the sensor array.
This unique combination of fluidics, micromachining, and semiconductor technology enables the direct translation of
genetic information (DNA) to digital information (DNA sequence), rapidly generating large quantities of high-quality data.

The Personal Genome Machine™, along with Ion Torrent semiconductor chips, Ion Torrent reagent kits, and the Torrent
Server/Torrent Suite software, allow Ion Torrent to deliver a cutting-edge sequencing solution.
Discover scalability Discover simplicity Discover speed
scales like a semiconductor              simple chemistry                          direct, real-time detection technology

• Leverages $1 trillion semiconductor    • Simplest sequencing chemistry:          • Makes sequencing accessible to
  industry investment                      hydrogen ion detection (pH meter)         new applications and markets
• Scales by density: 40 cumulative       • Natural nucleotides: no enzymatic       • Short run time supports fast
  years of Moore’s Law                     cascade, no fluorescence, and no          research cycle and faster time to
• Scales by volume: 400 standard           chemiluminescence                         publication
  semiconductor foundries from           • Low-cost, standard reagents             • The Chip is the Machine™: no optics,
  which to choose                                                                    no light, no scanning




Sequencing and analysis pipeline
The Ion Torrent™ sequencing workflow consists of a number of standard
elements—creation of a DNA or RNA library, a simple PCR process creating
amplified templates on proprietary Ion Sphere™ particles, followed by a sequenc-
ing run on the PGM™ platform.
With the completion of a PGM™ sequencer run, data automatically transfer to the
dedicated Torrent Server that runs Torrent Suite software. Here, raw Ion signals
are converted to base calls and stored in industry-standard SFF or FASTQ files.
These data can be processed by a variety of commercially available software
packages for applications such as variant detection, RNA-Seq,
ChIP-Seq, or de novo genome assembly.
Specifications
 Ion 314™ Chip

 Scale                                  1.3 million wells

 Data output                            Starting at 10 Mb of high-quality sequence*

 Ion 316™ Chip

 Scale                                  6.3 million wells

 Data output                            Starting at 100 Mb of high-quality sequence*

 Ion 318 Chip
          ™       †



 Scale                                  ~12 million wells

 Data output                            Starting at 1 Gb of high-quality sequence*

 For all chips

 Data output                            SFF/FASTQ file output

 Reagents                               Complete sets of reagents, including library, template, and sequencing kits

 Applications                           Amplicon sequencing, microbial sequencing, RNA-Seq, ChIP-Seq, targeted resequencing, copy number
                                        analysis, methylation, paired-ends

Ordering information
 Description                                                                                                                                               Part No.

 Personal Genome Machine™
 Ion PGM™ System                                                                                                                                           4462921
 Includes PGM sequencer (4462917) and Torrent Server (4462918)
                   ™



 Service Contracts
 AB Assurance Plan                                                                                                                                         ZG11SCIONPGMSYS
 Rapid Exchange Program AB Assurance Plan                                                                                                                  ZGEXSCIONPGMSYS

 Semiconductor Sequencing Chips
 Ion 314™ Chip Kit (8 chips)                                                                                                                               4462923
 Ion 316 Chip Kit (4 chips)
          ™
                                                                                                                                                           4466616
 Ion 316 Chip Kit (8 chips)
          ™
                                                                                                                                                           4469496

 Reagent Kits
 Ion Xpress™ Fragment Library Kit (up to 20 reactions)                                                                                                     4468987
 Ion Fragment Library Kit (up to 20 reactions)                                                                                                             4466464
 Ion Total RNA-Seq Kit (12 reactions)                                                                                                                      4466666
 Ion DNA Barcode 1-16 Kit† (10 sets of 16 libraries)                                                                                                       4468654
 Ion Xpress™ Template Kit (10 reactions)                                                                                                                   4469001
 Ion Sequencing Kit (8 reactions)                                                                                                                          4468997

 Ion Control Kits
 Ion Control Materials Kit (3 reactions each per control)                                                                                                  4466465
 Ion Sphere™ Quality Control Kit (20 measurements)                                                                                                         4468656
 Ion Library Quantitation Kit (250 reactions)                                                                                                              4468802
 * Throughput calculated with Escherichia coli DH10B genome, using Ion Sequencing 314 chemistry and a 100 bp read length PGM™ sequencer configuration.
 † The content provided herein may relate to products that have not been officially released and is subject to change without notice.


For Research Use Only. Not intended for any animal or human therapeutic or diagnostic use.
© 2011 Life Technologies Corporation. All rights reserved. The trademarks mentioned herein are the property of Life Technologies Corporation or their respective owners.
Printed in the USA. CO23490 0711




www.lifetechnologies.com

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Ion Torrent Personal Genome Machine - The Chip is the Machine

  • 1. Ion Torrent The Chip is the Machine ™ Ion Torrent The Chip is the Machine scalability simplicity speed
  • 2. Scalability massively scalable semiconductor technology Simplicity natural biochemistry, no optical components Speed runs in about two hours, not days or weeks Discover Ion Torrent The Ion Personal Genome Machine™ (PGM™) is simpler, more cost-effective, and more scalable than any other sequencing technology. The PGM™ sequencer is a benchtop system utilizing groundbreaking and disruptive semiconductor technology that enables rapid and scalable sequencing experiments. Ion Torrent technology uses a massively parallel array of proprietary semiconductor sensors to perform direct, real-time measurement of the hydrogen ions produced during DNA replication. A high-density array of wells on the Ion semicon- ductor chips provides millions of individual reactors, and integrated fluidics allow reagents to flow over the sensor array. This unique combination of fluidics, micromachining, and semiconductor technology enables the direct translation of genetic information (DNA) to digital information (DNA sequence), rapidly generating large quantities of high-quality data. The Personal Genome Machine™, along with Ion Torrent semiconductor chips, Ion Torrent reagent kits, and the Torrent Server/Torrent Suite software, allow Ion Torrent to deliver a cutting-edge sequencing solution.
  • 3. Discover scalability Discover simplicity Discover speed scales like a semiconductor simple chemistry direct, real-time detection technology • Leverages $1 trillion semiconductor • Simplest sequencing chemistry: • Makes sequencing accessible to industry investment hydrogen ion detection (pH meter) new applications and markets • Scales by density: 40 cumulative • Natural nucleotides: no enzymatic • Short run time supports fast years of Moore’s Law cascade, no fluorescence, and no research cycle and faster time to • Scales by volume: 400 standard chemiluminescence publication semiconductor foundries from • Low-cost, standard reagents • The Chip is the Machine™: no optics, which to choose no light, no scanning Sequencing and analysis pipeline The Ion Torrent™ sequencing workflow consists of a number of standard elements—creation of a DNA or RNA library, a simple PCR process creating amplified templates on proprietary Ion Sphere™ particles, followed by a sequenc- ing run on the PGM™ platform. With the completion of a PGM™ sequencer run, data automatically transfer to the dedicated Torrent Server that runs Torrent Suite software. Here, raw Ion signals are converted to base calls and stored in industry-standard SFF or FASTQ files. These data can be processed by a variety of commercially available software packages for applications such as variant detection, RNA-Seq, ChIP-Seq, or de novo genome assembly.
  • 4. Specifications Ion 314™ Chip Scale 1.3 million wells Data output Starting at 10 Mb of high-quality sequence* Ion 316™ Chip Scale 6.3 million wells Data output Starting at 100 Mb of high-quality sequence* Ion 318 Chip ™ † Scale ~12 million wells Data output Starting at 1 Gb of high-quality sequence* For all chips Data output SFF/FASTQ file output Reagents Complete sets of reagents, including library, template, and sequencing kits Applications Amplicon sequencing, microbial sequencing, RNA-Seq, ChIP-Seq, targeted resequencing, copy number analysis, methylation, paired-ends Ordering information Description Part No. Personal Genome Machine™ Ion PGM™ System 4462921 Includes PGM sequencer (4462917) and Torrent Server (4462918) ™ Service Contracts AB Assurance Plan ZG11SCIONPGMSYS Rapid Exchange Program AB Assurance Plan ZGEXSCIONPGMSYS Semiconductor Sequencing Chips Ion 314™ Chip Kit (8 chips) 4462923 Ion 316 Chip Kit (4 chips) ™ 4466616 Ion 316 Chip Kit (8 chips) ™ 4469496 Reagent Kits Ion Xpress™ Fragment Library Kit (up to 20 reactions) 4468987 Ion Fragment Library Kit (up to 20 reactions) 4466464 Ion Total RNA-Seq Kit (12 reactions) 4466666 Ion DNA Barcode 1-16 Kit† (10 sets of 16 libraries) 4468654 Ion Xpress™ Template Kit (10 reactions) 4469001 Ion Sequencing Kit (8 reactions) 4468997 Ion Control Kits Ion Control Materials Kit (3 reactions each per control) 4466465 Ion Sphere™ Quality Control Kit (20 measurements) 4468656 Ion Library Quantitation Kit (250 reactions) 4468802 * Throughput calculated with Escherichia coli DH10B genome, using Ion Sequencing 314 chemistry and a 100 bp read length PGM™ sequencer configuration. † The content provided herein may relate to products that have not been officially released and is subject to change without notice. For Research Use Only. Not intended for any animal or human therapeutic or diagnostic use. © 2011 Life Technologies Corporation. All rights reserved. The trademarks mentioned herein are the property of Life Technologies Corporation or their respective owners. Printed in the USA. CO23490 0711 www.lifetechnologies.com