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ACCELERATING
DIAGNOSTICS USE
TO PREVENT AMR
ABOUT FIND
FIND was founded in 2003 to bridge existing
development gaps for essential diagnostics by
initiating and coordinating research and development
(R&D) projects in collaboration with the international
research community, the public sector and the in vitro
diagnostics industry. Today, FIND is a leading partner
across the value chain of diagnostics development
and delivery. We have programmes in tuberculosis
and acute febrile respiratory infections, malaria and
acute febrile syndrome, hepatitis C and neglected
tropical diseases. We also have mini-portfolios in
areas affecting reproductive and child health: HIV;
sexually transmitted infections; and infections and
nutritional deficiencies in children less than five
years of age. At FIND, we envision a world where
diagnostics guide the way to health for all people. We
aim to turn complex diagnostic challenges into simple
solutions to transform lives and overcome diseases
of poverty. To do this we focus on four strategic goals
throughout all the disease areas in which we work:
Catalyse
development
Accelerate
access
Guide use
& policy
Shape
the agenda
Identify needed diagnostic solutions and
remove barriers to their development
Support uptake and appropriate use of
diagnostics to achieve health impact
Lead products through the clinical trials pathway to
global policy on use and market entry
Improve understanding of the value of
diagnostics and strengthen commitment
to their funding and use
FIND’s
Vision
FIND’s
Mission
A world where diagnosis guides the way
to health for all people
Turning complex diagnostic challenges
into simple solutions to overcome
diseases of poverty and transform lives
“This is a global problem requiring multiple solutions – and
accessible, accurate, and affordable diagnostics play a vital role in
protecting our antibiotics and for surveillance in humans, animals,
and the environment. I am pleased that organisations such as
FIND are not only focusing on developing new diagnostics but
also implementing existing ones in all parts of the world. Global
leaders have recognised the importance of addressing antimicrobial
resistance – but now it is time to act.”
Professor Dame Sally Davies, UK Chief Medical Officer, IACG on
AMR co-convener
“...this is an issue of crucial importance for the entire human race
– for people in developed and less developed countries alike. We
must ensure that existing antibiotics remain effective, and that they
are used only when medically necessary ...”
Statement by Federal Chancellor Angela Merkel at the 68th session
of the WHO World Health Assembly in Geneva, 18 May 2015
“Antimicrobial resistance is a global health emergency that will
seriously jeopardize progress in modern medicine. There is an
urgent need for more investment in research and development,
otherwise we will be forced back to a time when people feared
common infections...”
Tedros Adhanom, Director-General, WHO, Call to Action on
AMR, 17 October 2017
Antibiotics first entered common use in the 1950s,
rightly perceived as wonder drugs as they truly
transformed human and animal health. Today,
their use has become ubiquitous and societies
and economies are reaping the benefits. But
bacteria, parasites and viruses are smarter than us.
It is now clear that these pathogens will naturally
evolve resistance to all our treatments. It is not an
understatement to say that that could be catastrophic
for humankind, as decades of medical progress are
on the brink of being wiped out.
Action is not optional, and diagnosis is an essential
weapon in our fight against antimicrobial resistance
(AMR). It shocks me that the way in which we make
prescribing decisions today hasn’t fundamentally
changed since the 1950s. There are many reasons
for this, including a lack of good and rapid tests to
confirm the judgement of the doctor, and the cost of
such tests exceeding the price of the drugs, leading
to “just in case” prescribing.
We need to stop treating antibiotics like candy. Yes,
we need to ensure – especially in low- and middle-
income countries – that everyone, humans and
animals alike, get the appropriate drugs when they
are really needed. But we need to stop behaving as
though antibiotics are the miracle cure for virtually
anything: from humans feeling a little under the
weather, to fattening animals faster in order to
increase farming productivity.
I had the pleasure of leading the 2016 Review
into Antimicrobial Resistance1
, which identified
interventions to address AMR that can boost supply
of new treatments, for example by incentivizing
research and development, and reduce demand
for current treatments by decreasing unnecessary
prescribing. Perhaps my single favourite of all the
demand-reducing interventions focuses on two really
powerful recommendations concerning diagnostics.
First, we believe the Market Entry Awards that we
proposed to stimulate the development of new
antibiotics should be equally applicable to state-
of-the-art diagnostic techniques. Second, we
recommended that the richest countries, including
all the G7 countries, should mandate into law that a
validated diagnostic assay demonstrating the need
for antibiotic therapy must be used prior to writing
a prescription. Without such a big, bold step, it is
unlikely that rapid progress can be made to reduce
the scale of inappropriate use and limit the rapid
emergence of resistance to our available drugs.
I thoroughly welcome the initiatives and strategies
that FIND is proposing for the development and
introduction of diagnostics to reduce the overuse
of antibiotics and ensure that new drugs will remain
effective for as long as possible. In the context of our
Review’s findings and recommendations, I believe
these steps will move us in the right direction of
reducing the scale of AMR globally.
FOREWORD BY JIM O’NEILL
1. Jim O’Neill (Review chairman). Tackling drug-resistant infections globally: final report and recommendations; the review on antimicrobial
resistance. May 2016. https://amr-review.org
3
AMR
ARLG
BARDA
CARB-X
CDC
DNA
EU
FAO
FIND
GAMRIF
GARD-P
GLASS
HIV
IACG
ICU
JPIAMR
LMICs
LRTI
MDR-TB
MRSA
NIH
OECD
OIE
R&D
ReAct
ReSeq
SDG
STI
TB
TTP
UNICEF
USAID
UTI
WEF
WHA
WHO
XDR-TB
Anti-microbial resistance
Antibacterial Resistance Leadership Group
United States Biomedical Advanced Research and Development Authority
Combating Antibiotic Resistant Bacteria Biopharmaceutical Accelerator
United States Centers for Disease Control and Prevention
Deoxyribonucleic acid
European Union
Food and Agriculture Organization of the United Nations
Foundation for Innovative New Diagnostics
Global Antimicrobial Resistance Research Innovation Fund
Global Antibiotic Research and Development Partnership
Global Antimicrobial Resistance Surveillance System
Human Immunodeficiency Virus
Inter-Agency Consultative Group
Intensive care unit
Joint Programming Initiative on Antimicrobial Resistance
Low- and middle-income countries
Lower respiratory tract infection
Multidrug-resistant tuberculosis
Methicillin-resistant Staphylococcus aureus
National Institutes of Health
Organisation for Economic Co-operation and Development
World Organisation for Animal Health
Research and development
Action on Antibiotic Resistance
Relational Sequencing data platform
United Nations Sustainable Development Goal
Sexually transmitted infection
Tuberculosis
Target product profile
United Nations Children’s Fund
United States Agency for International Development
Urinary tract infection
World Economic Forum
World Health Assembly
World Health Organization
Extensively drug-resistant tuberculosis
ABBREVIATIONS
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR4
The inappropriate use of antibiotics and other
medicines is fuelling the emergence of antimicrobial
resistance (AMR) globally, and is reducing the
effectiveness of the few treatment options we have
left to treat severe bacterial illnesses. Currently,
700,000 deaths annually are due to drug-resistant
strains of common bacterial infections, HIV and
malaria and it is estimated that by 2050, 10 million
deaths will be caused by AMR each year. Combatting
AMR is crucial to achieve the United Nations
Sustainable Development Goals (SDGs). Diagnostics
are recognized as having a key role in both the Global
Action Plan on Antimicrobial Resistance (WHO) and
the AMR Framework for Action supported by the
IACG. Diagnosis as the ‘first prescription’ has proved
its ability to reinforce antimicrobials as a ’global good’,
to ensure patient health and to promote economic
resources.
FIND’s AMR strategy is focused on halting and
preventing antimicrobial resistance to save lives by
1) optimizing use of antimicrobials; 2) preserving new
drugs; and 3) empowering surveillance efforts.
FIND will work closely with its partners to address
the main barriers to diagnostic solutions for AMR by
contributing to the development of “fit-for-purpose”
diagnostic tests, to evidence collection for policies
and guidance on use, and to improved access to
diagnostics in countries. FIND plans to build an
existing resistance portfolio in tuberculosis, malaria
and non-malarial fever, where significant progress
has been made with rapid and near-patient molecular
and immunoassays. Current open access resources,
notably specimen banks and databases, will be
expanded to accelerate AMR assay development and
regulatory approval.
To achieve these objectives, the following
interventions have been prioritized for the current
strategic period:
Optimize use of antimicrobials through
triaging tools for community-acquired
infections, such as febrile illnesses,
respiratory or urinary tract infections:
Catalyse the development, evaluate
the utility fo r low- and middle-income
countries (LMICs) and create models for
uptake of simple and rapid diagnostic
solutions, including decision aid software,
to improve rational use of antimicrobials
and optimal management of patients when
they first present.
Preserve new drugs through companion
diagnostics for new antibiotics:
Support the development and use of
complementary rapid diagnostics,
starting with those for gonorrhea, to
prevent overuse and early emergence of
resistance.
Enable national and global surveillance
through fully-interconnected diagnostic
networks: Provide connectivity and data
interpretation to attain the full value of
diagnostic data for patients and systems
management, and deliver real-time
surveillance based on routine hospital and
community data.
The ultimate impact of FIND’s work will depend on
the uptake of such diagnostic solutions. As there
is currently no established mechanism to drive
access to innovation in LMICs, FIND will strongly
advocate and seek partners for the creation of an
AMR Diagnostics Use Accelerator that could create
a pull mechanism for further R&D investment. LMICs
carry the highest AMR burden, so global impact can
only be achieved by targeting these populations and
investing in diagnostic services that are scalable in
these settings.  
1
2
3
EXECUTIVE SUMMARY
5
The inappropriate use of antibiotics and other
medicines is fuelling the emergence of antimicrobial
resistance (AMR) globally, and is reducing the
effectiveness of the few treatment options we have
left to treat severe bacterial illnesses. Currently,
700,000 deaths annually are due to drug-resistant
strains of common bacterial infections, HIV and
malaria and it is estimated that by 2050, 10 million
deaths will be caused by AMR each year – with a loss
of over 100 trillion USD in economic output2
. In 2015
alone there were almost 500,000 new cases of multi-
drug resistant tuberculosis reported3
. A major cause
of neonatal deaths worldwide, sepsis is often caused
by resistant bacteria.
Addressing the spread of AMR is essential
to achieving the United Nations Sustainable
Development Goals (SDGs). In addition to good
health and well-being (SDG 3), AMR also threatens
sustainable food production (SDG 2), clean water
(SDG 6) and economic improvement (SDG 1 and 8).
AMR does not discriminate. The most vulnerable
populations are most at risk for contracting life
threatening infections. In particular, people living
in LMICs are significantly affected by high rates of
AMR, as indiscriminate use of antibiotics – a major
driver in the development of drug resistance – to
treat non-bacterial infections is common due to the
fact that doctors and health care providers often
rely on empirical evidence, even for 2nd
and 3rd
line
antibiotics, due to a lack of accessible and usable
diagnostic tests.
In the absence of appropriate diagnostics, we have
seen a 40% increase in the global consumption
of antibiotics in a single decade2
. There is a clear
observed correlation between antibiotic overuse
and resistance. In LMICs, most children with
fever and a negative malaria test are estimated to
receive antibiotics (e.g. 60-95% in a study carried in
Tanzania), while only a very small share of them would
actually need them, as the majority of these cases are
self-limited viral illnesses.
The issue of how to fight AMR has been on the global
public health agenda for some time, yet it has only
recently been raised to a crisis level, with increasing
political momentum4
and global attention5
. At the
same time there has been as a growing recognition of
the benefits that diagnostics can bring to many of the
identified core action areas2
.
2. O’Neill J. “Tackling Drug-Resistant Infections Globally: Final
Report and Recommendations”. May 2016 https://amr-review.org/
sites/default/files/160518_Final%20paper_with%20cover.pdf
3. WHO. Global Tuberculosis Report, 2017. https://amr-review.org/
4. G20 Health Ministers’ Meeting: Fighting Antimicrobial
Resistance, Berlin, 20 May 2017 http://www.oecd.org/g20/
summits/hamburg/g20-health-ministers-meeting-fighting-
antimicrobial-resistance.htm
5. AMR Framework for Action Supported by the IACG, August
2017 http://www.who.int/antimicrobial-resistance/interagency-
coordination-group/20170818_AMR_FfA_v01.pdf
AMR CHALLENGES AND OPPORTUNITIES:
GLOBAL AND LOCAL
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR6
Saving
“the global good”
Saving
patients lives
Saving money
$
•• CRP POC testing can reduce antibiotic prescribing in general practice by
20-40%
•• Procalcitonin-guided management can reduce antibiotic prescribing in
both general practice (OR 0.10) and emergency departments (OR 0.34)
•• Rapid molecular diagnostics can reduce the time to pathogen identification
•• Use of blood culture diagnostics, coupled with stewardship practices, is
associated with improved times to optimal and effective antimicrobial tx, a
critical prerequisite e.g. for mortality reduction in sepsis
•• Active surveillance testing (AST) for MRSA can lead to a cost-benefit of
>$80.000/1000 patients
Diagnosis allows us to protect not just our critical
drug arsenal, but also patients who are under
threat from resistant pathogens. Diagnosis as the
‘first prescription’ has proven its ability to save
antibiotics, health and money. A number of studies
show that antibiotic use can be dramatically cut
through the use of a simple diagnostic and there
is increasing evidence that limiting overuse of
antibiotics can have positive impact on individual
patient outcomes6,7,8,9,10,11,12
. Diagnostics have been
shown to reduce the time to pathogen identification
and to optimal and effective antimicrobial treatment;
active surveillance testing can lead to significant cost
savings13,14,15
.
DIAGNOSTICS: A CRITICAL COMPONENT OF
AMR SOLUTIONS
6. Nga et al., “Point-of-care C-reactive protein testing to reduce inappropriate use of antibiotics for non-severe acute respiratory infections
in Vietnamese primary health care: a randomised controlled trial”, Lancet Glob Health, August 2016
7. Lubell et al., “Modelling the Impact and Cost-Effectiveness of Biomarker Tests as Compared with Pathogen-Specific Diagnostics in the
Management of Undifferentiated Fever in Remote Tropical Settings”, PLoS ONE, March 30, 2016
8. Lowe et al., “Targeted Antimicrobial Stewardship Intervention for Inpatients with Viral respiratory tract infections.” Open Forum Infectious
Diseases. Vol. 3. No. suppl_1. Oxford University Press, 2016.
9. “White paper on Rapid Diagnostics Technologies to Tackle Antimicrobial Resistance”, https://healthfirsteurope.eu/wp-content/
uploads/2015/05/White-Paper-on-rapid-diagnostic-technologies-to-tackle-AMR.pdf,, Health First Europe, 2017
10. Tonkin-Crine et al., “Clinician-targeted interventions to influence antibiotic prescribing behaviour for acute respiratory infections in
primary care: an overview of systematic reviews.” Cochrane Review
11. Conway et al., “Recurrent Urinary Tract Infections in Children – Risk factors and association with prophylactic antimicrobials”, JAMA,
2007
12. Brismar et al., “Comparative effects of clarithromycin and erythromycin on the normal intestinal microflora.” Scan. J Infect Dis 23.5
(1991); Buffie et al., “Profound alterations of intestinal microbiota following a single dose of clindamycin.” Infect Immun 80.1 (2012); Sekirov,
Inna, et al., “Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection.” Infect Immun 76.10
(2008); Teo et al., “The infant naso-pharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.”
Cell Host Microbe 17.5 (2015); Boursi et al., “The effect of past antibiotic exposure on diabetes risk.” Eur J Endocrin 172.6 (2015).
13. Banerjee et al., “Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility
testing. Clin Infect Dis 2015;61:1071
14. Messacar et al., “Clinical Impact and Provider Acceptability of Real-Time Antimicrobial Stewardship Decision Support for Rapid
Diagnostics in Children With Positive Blood Culture Results”, J Pediatric Infect Dis Soc, 2016
15. Peterson et al., “Methicillin-Resistant Staphylococcus aureus Control in the 21st Century: Laboratory Involvement Affecting Disease
Impact and Economic Benefit from Large Population Studies.” J Clin Microbiol, 2016
Figure 1: Diagnosis as the first prescription.
7
The overuse of antibiotics is often linked to their use
in treating non-bacterial infections, predominantly
when patients present with generalized symptoms
such as acute fever, lower respiratory tract
infections, urinary tract infections, sexually
transmitted infections or diarrhoea. A U.S. study
showed that two-thirds of the 40 million people who
are given antibiotics for respiratory issues annually
receive them unnecessarily16
.
Diagnosis enables the rapid selection of the most
appropriate therapy. It can also reduce the length
of time a patient may be treated empirically, either
with ineffective or unnecessary antimicrobials.
Rapid susceptibility diagnosis allows for prompt
escalation or de-escalation of antibiotic therapy,
and switches between first-, second- and third-line
treatment options. For example, the use of blood
culture diagnosis is associated with improved time
to optimal and effective antimicrobial therapy and
a decrease in unnecessary antimicrobial use in
children . In addition, given the substantial problems
around antibiotic quality, national quality assurance
programmes that are equipped with the right
technologies can detect counterfeit or sub-standard
antibiotics.
The public health benefit of reducing the
inappropriate use of antibiotics is directly linked
to reducing the selective pressure that drives the
emergence of resistance.
Stewardship of current and new antibiotics is
paramount to ensuring they retain their efficacy for
as long as possible, especially for critically needed
treatments, e.g., for gram-negative bacteria like
N. gonorrhoea. Resistance will naturally emerge to
any new drug but the early introduction of a gating
diagnostic will ensure that these drugs are used
appropriately, shielding them from rapid overuse and
early emergence of resistance. This protection of
new drugs should slow the emergence of resistance
and preserve this global resource.
Connected surveillance tools to track and map
emergence, geographical patterns and range
across pathogens of resistance are the basis of
national and global surveillance programmes such
as the Global Antimicrobial Resistance Surveillance
System. They enable appropriate control measures
at local, national and global levels, as well as
improved treatment strategies. Screening and
isolation of infected patients help prevent the spread
of resistant pathogens in community and hospital
settings. Sharing of information on the emergence of
resistance at the national, regional and global level
helps to set guidelines and drive prioritization of both
development and access activities.
Beyond these three critical areas, the role of
diagnostics to combat AMR is evident across every
category set out in the IACG Framework for Action
(Table 1).
Optimizing use of antimicrobials
Preserving new drugs
Empowering surveillance efforts
16. Data extracted from: Shapiro et al., “Antibiotic prescribing for adults in ambulatory care in the USA, 2007.09.” Journal of Antimicrobial
Chemotherapy, 2013
17. Messacar et al., “Clinical Impact and Provider Acceptability of Real-Time Antimicrobial Stewardship Decision Support for Rapid
Diagnostics in Children With Positive Blood Culture Results”, J Pediatric Infect Dis Soc, 2016
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR8
Reduce
need and
unintentional
exposure
Optimize use of
medicine
Invest in
innovation,
supply and
access
Human infection prevention and
control
Identification of resistant
pathogens
Clean water and sanitation
Identification of source
contamination
Clean water and sanitation
Identification of resistance;
surveillance of zoonotic
transmission events
Food safety Identification of contaminants
Environmental contamination Quantify antibiotics
Human use
Rapid triaging, infection and
resistance identification
Animal & agricultural use Identification of pathogens
Laboratory capacity & surveillance
Identification of pathogens and
resistance
Basic research Biomarker discovery
Development of therapeutics &
access
Efficacy measurement,
Stewartship of new therapeutics
Diagnostics development and
access
Applies to all
Vaccine development and access
Efficacy measurement, Rapid
identification for deployment
Quality Counterfeit drug detection
Table 1: Diagnostics underpin each of the IACG Framework for Action content areas.
Acknowledging the pivotal role of diagnostics in
safeguarding antibiotics as a global good, patient
lives and country resources, FIND has developed
a strategy that focuses on halting and preventing
AMR by targeting three discreet challenges:
•	optimizing use of antimicrobials;
•	preserving new drugs; and
•	empowering surveillance efforts.
To achieve this, FIND will draw on its existing
operating model as well as on new initiatives in an
end-to-end effort in which product development
is complemented with work on policy initiatives
and access (Figure 2). The planned results of our
work within the next years are that antibiotic use
will be underpinned by results of simple tests that
are deployed in stewardship strategies especially
for new drugs, and are fully interconnected for
robust surveillance. While working on global R&D
solutions, we will target LMICs for access work.
Given the dynamic nature of AMR and its rapid
spread across borders, addressing the problem in
LMICs is expected to have global impact, as these
countries carry the highest AMR burden and have
the most challenging access issues.
FIND’S STRATEGY IN AMR
9
FIND interviewed ~30 experts and stakeholders
to help identify priority AMR needs and barriers
outside of the vertical programmes for TB, malaria
and HIV. Aside from identifying an important need
for R&D, it was noted that, more importantly,
barriers to uptake must be lifted. In LMICs, some
diagnostics may not be in use because they are
either unavailable or too expensive for these
markets. Others have no data supporting their use
in LMICs, which further hinders their uptake and
appropriate market pricing. The low demand and
resulting low industry investment is complicated by
the lack of a global health purchasing entity, like
the Global Fund, especially given the cross-cutting
nature of AMR.
While typical LMIC market dynamics hamper
access to available diagnostics, there is a larger
problem in terms of AMR diagnostics. In nearly
all cases, it is cheaper and simpler to treat a
patient with antibiotics than to test a patient
with a diagnostic. Antibiotics are generally
unregulated and easily available. Since patients
are mostly responsible for their own health care
costs, it will be a challenge to convince them to
pay for a testing and treatment, especially when
the diagnostic part will likely be several factors
more expensive than the drugs. Compounding
this complication is the facility of providing an
antibiotic. The doctor or health care provider
may feel they have provided good care by giving
antibiotics and the patient in turn feels well cared
for. This is particularly important in rural settings
where patients cannot always get hold of medical
advice and where follow-up visits may not be
feasible even in the case of increasing severity.
FIND’s strategic activities aim to respond to the
main identified barriers that affect the impact of
diagnostic solutions (Figure 3).
Optimized
antimicrobial use
New drugs
preserved
Surveillance efforts
empowered
Simple tools for community-
acquired infections inform
antibiotic use
Companion diagnostics
for new antibiotics used in
stewartship strategies
Fully-interconnected
diagnostic networks enable
real-time surveillance
Figure 2: FIND’s strategy to achieve impact in AMR.
Saving “the global good”
Saving patients lives
Saving money$
IMPACT
Outcomes
1
1
2
2
3
3
Outputs
1
2
3
Inputs
End-to-end approach,
from R&D for “fit-for-
purpose” diagnostics
to evidence for
policy to Models for
successful country
introduction
Established
programmatic
expertise (e.g. TB,
fever) and practice (e.g.
WHO alignment)
Innovative partnering
and funding initiatives
such as the “Dx Use
Accelerator”
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR10
To date, FIND’s work in AMR has focused on
tuberculosis, malaria and Fever; notably the
development, evaluation and introduction of rapid
molecular and sequencing-based solutions for drug
susceptibility testing and point–of-care triaging tools.
By analysing the patient pathway and the diagnostic
information that is needed at different levels of the
health system, we narrowed down eight priority
interventions and ranked them in terms of short-term
action (Figure 4).
PRIORITY INTERVENTIONS FOR IMPACT
Development
of“fit-for-purpose”
diagnostics
Develop prioritized
diagnostics strategies with
WHO
Create supporting services
e.g. virtual bio-repositories,
sequencing databases
Steward R&D pipeline for
prioritized needs
Evidence for policies
& guidance on use
Provide evidence on new
tests for WHO-prioritized
needs
Expand ReSeq TB database
for sequencing-based
surveillance
Develop decision aid
package combining
algorithms, software and
simple diagnostics
Country introduction
& scaled access
Understand markets and
motivators for behaviour
change
Apply connectivity
learnings to AMR for
patient management and
surveillance
Define and implement
replicable diagnostic service
delivery models
Ecosystems change
Raise awareness for the value of diagnostics
(e.g. through specific campaigns; AMR score card, etc.)
Mobilize finance and procurement mechanisms for market sustainability
Figure 3: Solutions across the value chain to address barriers limiting access to and use of diagnostics.
11
Figure 4: Preliminary prioritization of needs (1 = highest priority, stars indicating areas of near term focus) based
on existing and relevant tools to address identified scenarios.
Figure 5: Three priority diagnostic interventions to contribute to WHO Global Action Plan
Identified
scenarios
Key needs Diagnostic
readiness
Impact:
Antibiotic
use
Impact:
Lives
saved
Role for
FIND
R&D
Policy &
Access
1. Fever and/or
LRTIs
R&D: develop triaging tools
Pol. & Acc.: Evaluate dx packages: e.g.,
CRP; Procalcetonin; CBC; mol panels
+++ ++++ +++ +++ 1 1
2. UTIs
Pol. & Acc.: Evaluate urinary dipsticks
and define route-to-market
++++ ++++ + +++ 3 1
3. Diarrhoea
Pol. & Acc.: evaluate rota/ adenovirus
RDTs, multiplex molecular test
+++ +++ ++ +++ 3 3
4. New-borns with
suspected severe
infection
R&D: tbd
Pol. & Acc.: evaluate procalcetonin;
Blood culture; CBC; oximeters
+ ++++ ++++ + 2 2
5. STIs
R&D: improve gonorrhoea DST, new
RDTs and multiplex molecular tests
Pol. & Acc.: define route-to-market
++ ++ ++ ++ 1 2
6. Quality Diagno-
stics to identify
counterfeits
R&D: tbd
Pol. & Acc.: evaluate Minilab, CD3,
Raman/NIR
+ +++ +++ +++ 2 2
7. Patients with resi-
stant pathogens
Pol. & Acc.: evaluate molecular screening
of swabs or isolates
++ +++ ++ ++ 3 1
8. Surveillance data,
tools and processes
R&D: develop connectivity solutions
Pol. & Acc.: integrate existing solutions
into national surveillance
N/A ++++ ++ +++ 3 1
Taking the outcomes of the analysis and applying the findings towards our strategic objectives, FIND will
expand its existing portfolio to address the following priority needs:
Optimizing use of
antimicrobials
Triaging tools for community acquired infections such as febrile
illnesses, respiratory or urinary tract infections
Catalyse development, evaluate utility for LMICs and create models for
uptake of simple diagnostic solutions, including decision aid software,
to improve rational use of antimicrobials and optimal management of
patients when they first present
Companion diagnostics for new antibiotics:
Support the development and use of complementing diagnostics for
new antibiotics, starting with those for gonorrhea, to prevent overuse
and early emergence of resistance.
Fully interconnected diagnostic networks:
Provide connectivity and data interpretation solutions to achieve the full
value of diagnostic data for patients and systems management, and to
supply real-time surveillance based on routine hospital and community
data.
Preserving new drugs
Empowering surveillance
efforts
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR12
One of the most promising solutions for triaging
patients in the community that present with fever or
other common symptoms like cough or diarrhoea
would be a test based on host biomarker detection
to differentiate between bacterial and non-bacterial
infections. Through an extensive, publicly available
landscape analysis, FIND has identified a number
of biomarkers for fever that could be used in
rapid blood testing in low- and middle-income
countries. In 2017, FIND started a multi-centric
study to evaluate the performances of potential
new biomarkers to differentiate bacterial from
non-bacterial febrile illnesses of outpatients from
hospitals in three countries.
To prevent the use of unnecessary antibiotics, FIND
plans to expand this triaging programme to evaluate
the utility of simple triaging tools (e.g. UTI dipsticks,
electronic health algorithms), redesign or adapt them
for LMIC needs and develop models for uptake to
optimize the use of antimicrobials.
FIND aims to support the continued efficacy of
new antimicrobials. An initial priority could be the
development of diagnostics to improve better rapid
gonorrhoea tests and resistance testing to enable
a definitive diagnosis prior to treating patients with
new antibiotics that are currently in development.
These tests will ensure that only patients with
gonorrhoea or drug-resistant gonorrhoea receive
the new treatment, thereby preventing overuse and
early emergence of resistance. It is estimated that
introducing a point-of-care rapid test for gonorrhoea
could significantly reduce the use of ceftriaxone and
shorten the mean time to treatment by 2.3 days18
.
Ensuring connectivity, i.e., linking diagnostic tests
with communications technology, allows for better
management of health data and maximizes the
health impact of the tests. Connectivity solutions
help strengthen the link between patient diagnosis
and treatment. The real-time transmission of geo-
tagged test results to national health information
systems means that potential AMR cases can
be addressed immediately, allowing for a rapid
response. FIND plans to establish connectivity for
AMR diagnostics and decision aid tools, thereby
extending the reach of national surveillance
programmes to include routine hospital and
community data. In addition, remote monitoring can
improve supply chain management and forecasting
and enhance diagnostic device quality assurance.
Triaging tools for community acquired infections
Companion diagnostics for new antibiotics
Data utilization for clinical decision-making and surveillance
18. A study conducted in Tanzania among acute febrile children shows that 70.5% of the children had a viral disease, 22.0% had a
bacterial disease and 10.9% had a parasitic disease.
13
FIND works as a bridge between experts in
technology development, policy, and clinical care
and has active collaborations with over 200 partners.
FIND will work closely with WHO to support the
development of TPPs, provide input on policy
recommendations and guidelines and inform
global surveillance efforts. Diagnostics are usually
a minor component of existing initiatives such as
CARB-X, JPIAMR, NIH, BARDA, Bill & Melinda
Gates Foundation, and ARLG and there is currently
no mechanism that supports interventions to drive
uptake of existing and new diagnostics to combat
AMR. FIND will i) collaborate with existing and new
partners to support an integrated response to AMR
(Figure 6); ii) advocate for the creation of an AMR
Diagnostics Use Accelerator to establish a smooth
pathway to uptake of diagnostics in LMICs; and
iii) create a pull mechanism for R&D investment by
creating market predictability. Through an Accelerator,
cross-cutting issues such as market and pricing
interventions; procurement mechanisms; policy
change; information, education and communication
for behaviour change and civil society engagement;
and knowledge management could be most
appropriately and usefully addressed.
OPERATING MODEL
OTHERS
•• Establish an AMR
Diagnostics Use Accelerator
•• Develop
companion
diagnostics,
starting with
gonorrhoea
•• Inform diagnostic priorities
with LMIC perspective
Discussion initiated
Identified prospect
•• Share experience and
data on diagnostics
needs and impact
•• Support
evaluation
and uptake
of diagnostic
solutions
Figure 6: FIND’s role in possible collaborations with key partners in the AMR response.
ACCELERATING DIAGNOSTICS USE TO PREVENT AMR14
Results and impact of the different interventions
will be monitored through robust and standardized
processes, and results widely disseminated through
partnering networks and other channels.
A step-change in diagnostic use is possible, as has
been demonstrated for malaria and HIV where we
have seen a rapid transformation of the diagnostics
landscape in LMICs within a decade. Change
for AMR will rely on strong partnerships and
coordination. Funding for scalable and innovative
interventions to overcome barriers and accelerate
diagnostic impacts is critical.
In combination, our priority interventions will
save global goods by prolonging the life span of
existing diagnostics, save health by ensuring better
and timelier treatment, and save money both by
reducing the use of antibiotics and the health
impact of antibiotic resistance.
FIND recognizes the burden caused by drug
resistant TB, HIV and malaria, and their role in
contributing to the global AMR challenge. However,
the focus of this investment case will specifically
be on pathogens and syndromes not already
addressed in existing programmes.
FIND’s AMR strategy will require a funding
commitment of ~$72M to drive the work divided
into three phases spanning the first six years, while
expecting a 10-year programme lifecycle (additional
funding to be identified in the later phases). Phases
have been structured so that key deliverables must
be completed to allow for next phase prioritization
and maturation of the initiative. Support for the
WHO’s Essential Diagnostics List will be a priority
during Phase 1 and Phase 2 to ensure alignment
and clarity on priorities.
Phase 1 will focus on establishing the key
partnerships and aligning on priorities in AMR
beyond fever. Market understanding on the
impact of diagnostics in AMR will be established
and priority activities will be implemented across
development, policy, and access. An R&D portfolio
will be built for at least two priority target product
profiles. Prioritized clinical scenarios, publication
of landscapes and TPPs, and establishing a
virtual sample bank and a decision-aid package
combining algorithms, software and simple
diagnostics will demonstrate early impact. Multi-
centre studies will be conducted to demonstrate
impact of at least three triaging tools. Study data
and support for the WHO Essential Diagnostics List
will inform priorities for Phase 2 as the work begins
to expand.
INVESTMENT NEED
Phase 1: Launch of AMR Strategy Years: 2018 - 2019 Funding Commitment: $17M
15
FIND’s fever programme, which includes some of the targeted activities here, is well underway, and
broader TPP and landscaping work has started. Establishing and operationalizing partnerships will be
among the initial priorities. Please reach out to catharina.boehme@finddx.org and cassandra.kelly@
finddx.org if you are interested in partnering with us on this important programme.
Phase 3 will continue to mature R&D portfolios
and deliver three new diagnostic solutions while
intensifying activities and in-country demonstrations
to drive policy change, and to ensure uptake
and adoption of game-changing diagnostics.
The work started in Phase 1, and continued in
Phase 2, around the establishment of a virtual
sample bank will be matured to enable the
development of emerging technologies. Definition
and demonstration of additional replicable service
delivery models in at least three countries will
ensure impact of the developed solutions. New
initiatives and opportunities will be clearly defined
to inform how the strategy should evolve into Phase
4 to support the global needs in AMR.
NEXT STEPS
Phase 2: Implement & Expand
Phase 3: Continue at scale
Years: 2020 - 2021
Years: 2022 - 2023
Funding Commitment: $30M
Funding Commitment: $25M
n Phase 2, the strategy will mature into established
pipelines encompassing existing and emerging
tools with investments into an expanded
R&D portfolio, including two new priorities.
Demonstration studies for at least four emerging
diagnostic tools will demonstrate impact. Focus
on expanding the ReSeq database to standardize
resistance profiles for pathogens beyond TB will
support global development and surveillance
efforts in the fight against AMR. At least two
replicable service delivery models will be defined
and implemented across three to five countries to
ensure uptake of solutions. In-country champion
networks will be established to facilitate change
at the local and national levels and ensure a
sustainable hand-off of projects once they are
completed. Connectivity solutions will be linked to
AMR to facilitate local-to-global communication,
data sharing and response to AMR.
Photo credits:
Cover: Ben Phillips
Page 17: Ben Phillips
© FIND 2018
Production and editing: FIND Communications
Design and layout: Minthical
Campus Biotech
Chemin des Mines 9 - 1202 Geneva
Switzerland
T: +41 (0)22 710 05 90
F: +41 (0)22 710 05 99
www.finddx.org
ACCELERATING DIAGNOSTICS USE
TO PREVENT AMR

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Accelerating Diagnostics Use to Prevent the Rise of Antimicrobial Resistance

  • 2. ABOUT FIND FIND was founded in 2003 to bridge existing development gaps for essential diagnostics by initiating and coordinating research and development (R&D) projects in collaboration with the international research community, the public sector and the in vitro diagnostics industry. Today, FIND is a leading partner across the value chain of diagnostics development and delivery. We have programmes in tuberculosis and acute febrile respiratory infections, malaria and acute febrile syndrome, hepatitis C and neglected tropical diseases. We also have mini-portfolios in areas affecting reproductive and child health: HIV; sexually transmitted infections; and infections and nutritional deficiencies in children less than five years of age. At FIND, we envision a world where diagnostics guide the way to health for all people. We aim to turn complex diagnostic challenges into simple solutions to transform lives and overcome diseases of poverty. To do this we focus on four strategic goals throughout all the disease areas in which we work: Catalyse development Accelerate access Guide use & policy Shape the agenda Identify needed diagnostic solutions and remove barriers to their development Support uptake and appropriate use of diagnostics to achieve health impact Lead products through the clinical trials pathway to global policy on use and market entry Improve understanding of the value of diagnostics and strengthen commitment to their funding and use FIND’s Vision FIND’s Mission A world where diagnosis guides the way to health for all people Turning complex diagnostic challenges into simple solutions to overcome diseases of poverty and transform lives
  • 3. “This is a global problem requiring multiple solutions – and accessible, accurate, and affordable diagnostics play a vital role in protecting our antibiotics and for surveillance in humans, animals, and the environment. I am pleased that organisations such as FIND are not only focusing on developing new diagnostics but also implementing existing ones in all parts of the world. Global leaders have recognised the importance of addressing antimicrobial resistance – but now it is time to act.” Professor Dame Sally Davies, UK Chief Medical Officer, IACG on AMR co-convener “...this is an issue of crucial importance for the entire human race – for people in developed and less developed countries alike. We must ensure that existing antibiotics remain effective, and that they are used only when medically necessary ...” Statement by Federal Chancellor Angela Merkel at the 68th session of the WHO World Health Assembly in Geneva, 18 May 2015 “Antimicrobial resistance is a global health emergency that will seriously jeopardize progress in modern medicine. There is an urgent need for more investment in research and development, otherwise we will be forced back to a time when people feared common infections...” Tedros Adhanom, Director-General, WHO, Call to Action on AMR, 17 October 2017
  • 4. Antibiotics first entered common use in the 1950s, rightly perceived as wonder drugs as they truly transformed human and animal health. Today, their use has become ubiquitous and societies and economies are reaping the benefits. But bacteria, parasites and viruses are smarter than us. It is now clear that these pathogens will naturally evolve resistance to all our treatments. It is not an understatement to say that that could be catastrophic for humankind, as decades of medical progress are on the brink of being wiped out. Action is not optional, and diagnosis is an essential weapon in our fight against antimicrobial resistance (AMR). It shocks me that the way in which we make prescribing decisions today hasn’t fundamentally changed since the 1950s. There are many reasons for this, including a lack of good and rapid tests to confirm the judgement of the doctor, and the cost of such tests exceeding the price of the drugs, leading to “just in case” prescribing. We need to stop treating antibiotics like candy. Yes, we need to ensure – especially in low- and middle- income countries – that everyone, humans and animals alike, get the appropriate drugs when they are really needed. But we need to stop behaving as though antibiotics are the miracle cure for virtually anything: from humans feeling a little under the weather, to fattening animals faster in order to increase farming productivity. I had the pleasure of leading the 2016 Review into Antimicrobial Resistance1 , which identified interventions to address AMR that can boost supply of new treatments, for example by incentivizing research and development, and reduce demand for current treatments by decreasing unnecessary prescribing. Perhaps my single favourite of all the demand-reducing interventions focuses on two really powerful recommendations concerning diagnostics. First, we believe the Market Entry Awards that we proposed to stimulate the development of new antibiotics should be equally applicable to state- of-the-art diagnostic techniques. Second, we recommended that the richest countries, including all the G7 countries, should mandate into law that a validated diagnostic assay demonstrating the need for antibiotic therapy must be used prior to writing a prescription. Without such a big, bold step, it is unlikely that rapid progress can be made to reduce the scale of inappropriate use and limit the rapid emergence of resistance to our available drugs. I thoroughly welcome the initiatives and strategies that FIND is proposing for the development and introduction of diagnostics to reduce the overuse of antibiotics and ensure that new drugs will remain effective for as long as possible. In the context of our Review’s findings and recommendations, I believe these steps will move us in the right direction of reducing the scale of AMR globally. FOREWORD BY JIM O’NEILL 1. Jim O’Neill (Review chairman). Tackling drug-resistant infections globally: final report and recommendations; the review on antimicrobial resistance. May 2016. https://amr-review.org
  • 5. 3 AMR ARLG BARDA CARB-X CDC DNA EU FAO FIND GAMRIF GARD-P GLASS HIV IACG ICU JPIAMR LMICs LRTI MDR-TB MRSA NIH OECD OIE R&D ReAct ReSeq SDG STI TB TTP UNICEF USAID UTI WEF WHA WHO XDR-TB Anti-microbial resistance Antibacterial Resistance Leadership Group United States Biomedical Advanced Research and Development Authority Combating Antibiotic Resistant Bacteria Biopharmaceutical Accelerator United States Centers for Disease Control and Prevention Deoxyribonucleic acid European Union Food and Agriculture Organization of the United Nations Foundation for Innovative New Diagnostics Global Antimicrobial Resistance Research Innovation Fund Global Antibiotic Research and Development Partnership Global Antimicrobial Resistance Surveillance System Human Immunodeficiency Virus Inter-Agency Consultative Group Intensive care unit Joint Programming Initiative on Antimicrobial Resistance Low- and middle-income countries Lower respiratory tract infection Multidrug-resistant tuberculosis Methicillin-resistant Staphylococcus aureus National Institutes of Health Organisation for Economic Co-operation and Development World Organisation for Animal Health Research and development Action on Antibiotic Resistance Relational Sequencing data platform United Nations Sustainable Development Goal Sexually transmitted infection Tuberculosis Target product profile United Nations Children’s Fund United States Agency for International Development Urinary tract infection World Economic Forum World Health Assembly World Health Organization Extensively drug-resistant tuberculosis ABBREVIATIONS
  • 6. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR4 The inappropriate use of antibiotics and other medicines is fuelling the emergence of antimicrobial resistance (AMR) globally, and is reducing the effectiveness of the few treatment options we have left to treat severe bacterial illnesses. Currently, 700,000 deaths annually are due to drug-resistant strains of common bacterial infections, HIV and malaria and it is estimated that by 2050, 10 million deaths will be caused by AMR each year. Combatting AMR is crucial to achieve the United Nations Sustainable Development Goals (SDGs). Diagnostics are recognized as having a key role in both the Global Action Plan on Antimicrobial Resistance (WHO) and the AMR Framework for Action supported by the IACG. Diagnosis as the ‘first prescription’ has proved its ability to reinforce antimicrobials as a ’global good’, to ensure patient health and to promote economic resources. FIND’s AMR strategy is focused on halting and preventing antimicrobial resistance to save lives by 1) optimizing use of antimicrobials; 2) preserving new drugs; and 3) empowering surveillance efforts. FIND will work closely with its partners to address the main barriers to diagnostic solutions for AMR by contributing to the development of “fit-for-purpose” diagnostic tests, to evidence collection for policies and guidance on use, and to improved access to diagnostics in countries. FIND plans to build an existing resistance portfolio in tuberculosis, malaria and non-malarial fever, where significant progress has been made with rapid and near-patient molecular and immunoassays. Current open access resources, notably specimen banks and databases, will be expanded to accelerate AMR assay development and regulatory approval. To achieve these objectives, the following interventions have been prioritized for the current strategic period: Optimize use of antimicrobials through triaging tools for community-acquired infections, such as febrile illnesses, respiratory or urinary tract infections: Catalyse the development, evaluate the utility fo r low- and middle-income countries (LMICs) and create models for uptake of simple and rapid diagnostic solutions, including decision aid software, to improve rational use of antimicrobials and optimal management of patients when they first present. Preserve new drugs through companion diagnostics for new antibiotics: Support the development and use of complementary rapid diagnostics, starting with those for gonorrhea, to prevent overuse and early emergence of resistance. Enable national and global surveillance through fully-interconnected diagnostic networks: Provide connectivity and data interpretation to attain the full value of diagnostic data for patients and systems management, and deliver real-time surveillance based on routine hospital and community data. The ultimate impact of FIND’s work will depend on the uptake of such diagnostic solutions. As there is currently no established mechanism to drive access to innovation in LMICs, FIND will strongly advocate and seek partners for the creation of an AMR Diagnostics Use Accelerator that could create a pull mechanism for further R&D investment. LMICs carry the highest AMR burden, so global impact can only be achieved by targeting these populations and investing in diagnostic services that are scalable in these settings.   1 2 3 EXECUTIVE SUMMARY
  • 7. 5 The inappropriate use of antibiotics and other medicines is fuelling the emergence of antimicrobial resistance (AMR) globally, and is reducing the effectiveness of the few treatment options we have left to treat severe bacterial illnesses. Currently, 700,000 deaths annually are due to drug-resistant strains of common bacterial infections, HIV and malaria and it is estimated that by 2050, 10 million deaths will be caused by AMR each year – with a loss of over 100 trillion USD in economic output2 . In 2015 alone there were almost 500,000 new cases of multi- drug resistant tuberculosis reported3 . A major cause of neonatal deaths worldwide, sepsis is often caused by resistant bacteria. Addressing the spread of AMR is essential to achieving the United Nations Sustainable Development Goals (SDGs). In addition to good health and well-being (SDG 3), AMR also threatens sustainable food production (SDG 2), clean water (SDG 6) and economic improvement (SDG 1 and 8). AMR does not discriminate. The most vulnerable populations are most at risk for contracting life threatening infections. In particular, people living in LMICs are significantly affected by high rates of AMR, as indiscriminate use of antibiotics – a major driver in the development of drug resistance – to treat non-bacterial infections is common due to the fact that doctors and health care providers often rely on empirical evidence, even for 2nd and 3rd line antibiotics, due to a lack of accessible and usable diagnostic tests. In the absence of appropriate diagnostics, we have seen a 40% increase in the global consumption of antibiotics in a single decade2 . There is a clear observed correlation between antibiotic overuse and resistance. In LMICs, most children with fever and a negative malaria test are estimated to receive antibiotics (e.g. 60-95% in a study carried in Tanzania), while only a very small share of them would actually need them, as the majority of these cases are self-limited viral illnesses. The issue of how to fight AMR has been on the global public health agenda for some time, yet it has only recently been raised to a crisis level, with increasing political momentum4 and global attention5 . At the same time there has been as a growing recognition of the benefits that diagnostics can bring to many of the identified core action areas2 . 2. O’Neill J. “Tackling Drug-Resistant Infections Globally: Final Report and Recommendations”. May 2016 https://amr-review.org/ sites/default/files/160518_Final%20paper_with%20cover.pdf 3. WHO. Global Tuberculosis Report, 2017. https://amr-review.org/ 4. G20 Health Ministers’ Meeting: Fighting Antimicrobial Resistance, Berlin, 20 May 2017 http://www.oecd.org/g20/ summits/hamburg/g20-health-ministers-meeting-fighting- antimicrobial-resistance.htm 5. AMR Framework for Action Supported by the IACG, August 2017 http://www.who.int/antimicrobial-resistance/interagency- coordination-group/20170818_AMR_FfA_v01.pdf AMR CHALLENGES AND OPPORTUNITIES: GLOBAL AND LOCAL
  • 8. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR6 Saving “the global good” Saving patients lives Saving money $ •• CRP POC testing can reduce antibiotic prescribing in general practice by 20-40% •• Procalcitonin-guided management can reduce antibiotic prescribing in both general practice (OR 0.10) and emergency departments (OR 0.34) •• Rapid molecular diagnostics can reduce the time to pathogen identification •• Use of blood culture diagnostics, coupled with stewardship practices, is associated with improved times to optimal and effective antimicrobial tx, a critical prerequisite e.g. for mortality reduction in sepsis •• Active surveillance testing (AST) for MRSA can lead to a cost-benefit of >$80.000/1000 patients Diagnosis allows us to protect not just our critical drug arsenal, but also patients who are under threat from resistant pathogens. Diagnosis as the ‘first prescription’ has proven its ability to save antibiotics, health and money. A number of studies show that antibiotic use can be dramatically cut through the use of a simple diagnostic and there is increasing evidence that limiting overuse of antibiotics can have positive impact on individual patient outcomes6,7,8,9,10,11,12 . Diagnostics have been shown to reduce the time to pathogen identification and to optimal and effective antimicrobial treatment; active surveillance testing can lead to significant cost savings13,14,15 . DIAGNOSTICS: A CRITICAL COMPONENT OF AMR SOLUTIONS 6. Nga et al., “Point-of-care C-reactive protein testing to reduce inappropriate use of antibiotics for non-severe acute respiratory infections in Vietnamese primary health care: a randomised controlled trial”, Lancet Glob Health, August 2016 7. Lubell et al., “Modelling the Impact and Cost-Effectiveness of Biomarker Tests as Compared with Pathogen-Specific Diagnostics in the Management of Undifferentiated Fever in Remote Tropical Settings”, PLoS ONE, March 30, 2016 8. Lowe et al., “Targeted Antimicrobial Stewardship Intervention for Inpatients with Viral respiratory tract infections.” Open Forum Infectious Diseases. Vol. 3. No. suppl_1. Oxford University Press, 2016. 9. “White paper on Rapid Diagnostics Technologies to Tackle Antimicrobial Resistance”, https://healthfirsteurope.eu/wp-content/ uploads/2015/05/White-Paper-on-rapid-diagnostic-technologies-to-tackle-AMR.pdf,, Health First Europe, 2017 10. Tonkin-Crine et al., “Clinician-targeted interventions to influence antibiotic prescribing behaviour for acute respiratory infections in primary care: an overview of systematic reviews.” Cochrane Review 11. Conway et al., “Recurrent Urinary Tract Infections in Children – Risk factors and association with prophylactic antimicrobials”, JAMA, 2007 12. Brismar et al., “Comparative effects of clarithromycin and erythromycin on the normal intestinal microflora.” Scan. J Infect Dis 23.5 (1991); Buffie et al., “Profound alterations of intestinal microbiota following a single dose of clindamycin.” Infect Immun 80.1 (2012); Sekirov, Inna, et al., “Antibiotic-induced perturbations of the intestinal microbiota alter host susceptibility to enteric infection.” Infect Immun 76.10 (2008); Teo et al., “The infant naso-pharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.” Cell Host Microbe 17.5 (2015); Boursi et al., “The effect of past antibiotic exposure on diabetes risk.” Eur J Endocrin 172.6 (2015). 13. Banerjee et al., “Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility testing. Clin Infect Dis 2015;61:1071 14. Messacar et al., “Clinical Impact and Provider Acceptability of Real-Time Antimicrobial Stewardship Decision Support for Rapid Diagnostics in Children With Positive Blood Culture Results”, J Pediatric Infect Dis Soc, 2016 15. Peterson et al., “Methicillin-Resistant Staphylococcus aureus Control in the 21st Century: Laboratory Involvement Affecting Disease Impact and Economic Benefit from Large Population Studies.” J Clin Microbiol, 2016 Figure 1: Diagnosis as the first prescription.
  • 9. 7 The overuse of antibiotics is often linked to their use in treating non-bacterial infections, predominantly when patients present with generalized symptoms such as acute fever, lower respiratory tract infections, urinary tract infections, sexually transmitted infections or diarrhoea. A U.S. study showed that two-thirds of the 40 million people who are given antibiotics for respiratory issues annually receive them unnecessarily16 . Diagnosis enables the rapid selection of the most appropriate therapy. It can also reduce the length of time a patient may be treated empirically, either with ineffective or unnecessary antimicrobials. Rapid susceptibility diagnosis allows for prompt escalation or de-escalation of antibiotic therapy, and switches between first-, second- and third-line treatment options. For example, the use of blood culture diagnosis is associated with improved time to optimal and effective antimicrobial therapy and a decrease in unnecessary antimicrobial use in children . In addition, given the substantial problems around antibiotic quality, national quality assurance programmes that are equipped with the right technologies can detect counterfeit or sub-standard antibiotics. The public health benefit of reducing the inappropriate use of antibiotics is directly linked to reducing the selective pressure that drives the emergence of resistance. Stewardship of current and new antibiotics is paramount to ensuring they retain their efficacy for as long as possible, especially for critically needed treatments, e.g., for gram-negative bacteria like N. gonorrhoea. Resistance will naturally emerge to any new drug but the early introduction of a gating diagnostic will ensure that these drugs are used appropriately, shielding them from rapid overuse and early emergence of resistance. This protection of new drugs should slow the emergence of resistance and preserve this global resource. Connected surveillance tools to track and map emergence, geographical patterns and range across pathogens of resistance are the basis of national and global surveillance programmes such as the Global Antimicrobial Resistance Surveillance System. They enable appropriate control measures at local, national and global levels, as well as improved treatment strategies. Screening and isolation of infected patients help prevent the spread of resistant pathogens in community and hospital settings. Sharing of information on the emergence of resistance at the national, regional and global level helps to set guidelines and drive prioritization of both development and access activities. Beyond these three critical areas, the role of diagnostics to combat AMR is evident across every category set out in the IACG Framework for Action (Table 1). Optimizing use of antimicrobials Preserving new drugs Empowering surveillance efforts 16. Data extracted from: Shapiro et al., “Antibiotic prescribing for adults in ambulatory care in the USA, 2007.09.” Journal of Antimicrobial Chemotherapy, 2013 17. Messacar et al., “Clinical Impact and Provider Acceptability of Real-Time Antimicrobial Stewardship Decision Support for Rapid Diagnostics in Children With Positive Blood Culture Results”, J Pediatric Infect Dis Soc, 2016
  • 10. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR8 Reduce need and unintentional exposure Optimize use of medicine Invest in innovation, supply and access Human infection prevention and control Identification of resistant pathogens Clean water and sanitation Identification of source contamination Clean water and sanitation Identification of resistance; surveillance of zoonotic transmission events Food safety Identification of contaminants Environmental contamination Quantify antibiotics Human use Rapid triaging, infection and resistance identification Animal & agricultural use Identification of pathogens Laboratory capacity & surveillance Identification of pathogens and resistance Basic research Biomarker discovery Development of therapeutics & access Efficacy measurement, Stewartship of new therapeutics Diagnostics development and access Applies to all Vaccine development and access Efficacy measurement, Rapid identification for deployment Quality Counterfeit drug detection Table 1: Diagnostics underpin each of the IACG Framework for Action content areas. Acknowledging the pivotal role of diagnostics in safeguarding antibiotics as a global good, patient lives and country resources, FIND has developed a strategy that focuses on halting and preventing AMR by targeting three discreet challenges: • optimizing use of antimicrobials; • preserving new drugs; and • empowering surveillance efforts. To achieve this, FIND will draw on its existing operating model as well as on new initiatives in an end-to-end effort in which product development is complemented with work on policy initiatives and access (Figure 2). The planned results of our work within the next years are that antibiotic use will be underpinned by results of simple tests that are deployed in stewardship strategies especially for new drugs, and are fully interconnected for robust surveillance. While working on global R&D solutions, we will target LMICs for access work. Given the dynamic nature of AMR and its rapid spread across borders, addressing the problem in LMICs is expected to have global impact, as these countries carry the highest AMR burden and have the most challenging access issues. FIND’S STRATEGY IN AMR
  • 11. 9 FIND interviewed ~30 experts and stakeholders to help identify priority AMR needs and barriers outside of the vertical programmes for TB, malaria and HIV. Aside from identifying an important need for R&D, it was noted that, more importantly, barriers to uptake must be lifted. In LMICs, some diagnostics may not be in use because they are either unavailable or too expensive for these markets. Others have no data supporting their use in LMICs, which further hinders their uptake and appropriate market pricing. The low demand and resulting low industry investment is complicated by the lack of a global health purchasing entity, like the Global Fund, especially given the cross-cutting nature of AMR. While typical LMIC market dynamics hamper access to available diagnostics, there is a larger problem in terms of AMR diagnostics. In nearly all cases, it is cheaper and simpler to treat a patient with antibiotics than to test a patient with a diagnostic. Antibiotics are generally unregulated and easily available. Since patients are mostly responsible for their own health care costs, it will be a challenge to convince them to pay for a testing and treatment, especially when the diagnostic part will likely be several factors more expensive than the drugs. Compounding this complication is the facility of providing an antibiotic. The doctor or health care provider may feel they have provided good care by giving antibiotics and the patient in turn feels well cared for. This is particularly important in rural settings where patients cannot always get hold of medical advice and where follow-up visits may not be feasible even in the case of increasing severity. FIND’s strategic activities aim to respond to the main identified barriers that affect the impact of diagnostic solutions (Figure 3). Optimized antimicrobial use New drugs preserved Surveillance efforts empowered Simple tools for community- acquired infections inform antibiotic use Companion diagnostics for new antibiotics used in stewartship strategies Fully-interconnected diagnostic networks enable real-time surveillance Figure 2: FIND’s strategy to achieve impact in AMR. Saving “the global good” Saving patients lives Saving money$ IMPACT Outcomes 1 1 2 2 3 3 Outputs 1 2 3 Inputs End-to-end approach, from R&D for “fit-for- purpose” diagnostics to evidence for policy to Models for successful country introduction Established programmatic expertise (e.g. TB, fever) and practice (e.g. WHO alignment) Innovative partnering and funding initiatives such as the “Dx Use Accelerator”
  • 12. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR10 To date, FIND’s work in AMR has focused on tuberculosis, malaria and Fever; notably the development, evaluation and introduction of rapid molecular and sequencing-based solutions for drug susceptibility testing and point–of-care triaging tools. By analysing the patient pathway and the diagnostic information that is needed at different levels of the health system, we narrowed down eight priority interventions and ranked them in terms of short-term action (Figure 4). PRIORITY INTERVENTIONS FOR IMPACT Development of“fit-for-purpose” diagnostics Develop prioritized diagnostics strategies with WHO Create supporting services e.g. virtual bio-repositories, sequencing databases Steward R&D pipeline for prioritized needs Evidence for policies & guidance on use Provide evidence on new tests for WHO-prioritized needs Expand ReSeq TB database for sequencing-based surveillance Develop decision aid package combining algorithms, software and simple diagnostics Country introduction & scaled access Understand markets and motivators for behaviour change Apply connectivity learnings to AMR for patient management and surveillance Define and implement replicable diagnostic service delivery models Ecosystems change Raise awareness for the value of diagnostics (e.g. through specific campaigns; AMR score card, etc.) Mobilize finance and procurement mechanisms for market sustainability Figure 3: Solutions across the value chain to address barriers limiting access to and use of diagnostics.
  • 13. 11 Figure 4: Preliminary prioritization of needs (1 = highest priority, stars indicating areas of near term focus) based on existing and relevant tools to address identified scenarios. Figure 5: Three priority diagnostic interventions to contribute to WHO Global Action Plan Identified scenarios Key needs Diagnostic readiness Impact: Antibiotic use Impact: Lives saved Role for FIND R&D Policy & Access 1. Fever and/or LRTIs R&D: develop triaging tools Pol. & Acc.: Evaluate dx packages: e.g., CRP; Procalcetonin; CBC; mol panels +++ ++++ +++ +++ 1 1 2. UTIs Pol. & Acc.: Evaluate urinary dipsticks and define route-to-market ++++ ++++ + +++ 3 1 3. Diarrhoea Pol. & Acc.: evaluate rota/ adenovirus RDTs, multiplex molecular test +++ +++ ++ +++ 3 3 4. New-borns with suspected severe infection R&D: tbd Pol. & Acc.: evaluate procalcetonin; Blood culture; CBC; oximeters + ++++ ++++ + 2 2 5. STIs R&D: improve gonorrhoea DST, new RDTs and multiplex molecular tests Pol. & Acc.: define route-to-market ++ ++ ++ ++ 1 2 6. Quality Diagno- stics to identify counterfeits R&D: tbd Pol. & Acc.: evaluate Minilab, CD3, Raman/NIR + +++ +++ +++ 2 2 7. Patients with resi- stant pathogens Pol. & Acc.: evaluate molecular screening of swabs or isolates ++ +++ ++ ++ 3 1 8. Surveillance data, tools and processes R&D: develop connectivity solutions Pol. & Acc.: integrate existing solutions into national surveillance N/A ++++ ++ +++ 3 1 Taking the outcomes of the analysis and applying the findings towards our strategic objectives, FIND will expand its existing portfolio to address the following priority needs: Optimizing use of antimicrobials Triaging tools for community acquired infections such as febrile illnesses, respiratory or urinary tract infections Catalyse development, evaluate utility for LMICs and create models for uptake of simple diagnostic solutions, including decision aid software, to improve rational use of antimicrobials and optimal management of patients when they first present Companion diagnostics for new antibiotics: Support the development and use of complementing diagnostics for new antibiotics, starting with those for gonorrhea, to prevent overuse and early emergence of resistance. Fully interconnected diagnostic networks: Provide connectivity and data interpretation solutions to achieve the full value of diagnostic data for patients and systems management, and to supply real-time surveillance based on routine hospital and community data. Preserving new drugs Empowering surveillance efforts
  • 14. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR12 One of the most promising solutions for triaging patients in the community that present with fever or other common symptoms like cough or diarrhoea would be a test based on host biomarker detection to differentiate between bacterial and non-bacterial infections. Through an extensive, publicly available landscape analysis, FIND has identified a number of biomarkers for fever that could be used in rapid blood testing in low- and middle-income countries. In 2017, FIND started a multi-centric study to evaluate the performances of potential new biomarkers to differentiate bacterial from non-bacterial febrile illnesses of outpatients from hospitals in three countries. To prevent the use of unnecessary antibiotics, FIND plans to expand this triaging programme to evaluate the utility of simple triaging tools (e.g. UTI dipsticks, electronic health algorithms), redesign or adapt them for LMIC needs and develop models for uptake to optimize the use of antimicrobials. FIND aims to support the continued efficacy of new antimicrobials. An initial priority could be the development of diagnostics to improve better rapid gonorrhoea tests and resistance testing to enable a definitive diagnosis prior to treating patients with new antibiotics that are currently in development. These tests will ensure that only patients with gonorrhoea or drug-resistant gonorrhoea receive the new treatment, thereby preventing overuse and early emergence of resistance. It is estimated that introducing a point-of-care rapid test for gonorrhoea could significantly reduce the use of ceftriaxone and shorten the mean time to treatment by 2.3 days18 . Ensuring connectivity, i.e., linking diagnostic tests with communications technology, allows for better management of health data and maximizes the health impact of the tests. Connectivity solutions help strengthen the link between patient diagnosis and treatment. The real-time transmission of geo- tagged test results to national health information systems means that potential AMR cases can be addressed immediately, allowing for a rapid response. FIND plans to establish connectivity for AMR diagnostics and decision aid tools, thereby extending the reach of national surveillance programmes to include routine hospital and community data. In addition, remote monitoring can improve supply chain management and forecasting and enhance diagnostic device quality assurance. Triaging tools for community acquired infections Companion diagnostics for new antibiotics Data utilization for clinical decision-making and surveillance 18. A study conducted in Tanzania among acute febrile children shows that 70.5% of the children had a viral disease, 22.0% had a bacterial disease and 10.9% had a parasitic disease.
  • 15. 13 FIND works as a bridge between experts in technology development, policy, and clinical care and has active collaborations with over 200 partners. FIND will work closely with WHO to support the development of TPPs, provide input on policy recommendations and guidelines and inform global surveillance efforts. Diagnostics are usually a minor component of existing initiatives such as CARB-X, JPIAMR, NIH, BARDA, Bill & Melinda Gates Foundation, and ARLG and there is currently no mechanism that supports interventions to drive uptake of existing and new diagnostics to combat AMR. FIND will i) collaborate with existing and new partners to support an integrated response to AMR (Figure 6); ii) advocate for the creation of an AMR Diagnostics Use Accelerator to establish a smooth pathway to uptake of diagnostics in LMICs; and iii) create a pull mechanism for R&D investment by creating market predictability. Through an Accelerator, cross-cutting issues such as market and pricing interventions; procurement mechanisms; policy change; information, education and communication for behaviour change and civil society engagement; and knowledge management could be most appropriately and usefully addressed. OPERATING MODEL OTHERS •• Establish an AMR Diagnostics Use Accelerator •• Develop companion diagnostics, starting with gonorrhoea •• Inform diagnostic priorities with LMIC perspective Discussion initiated Identified prospect •• Share experience and data on diagnostics needs and impact •• Support evaluation and uptake of diagnostic solutions Figure 6: FIND’s role in possible collaborations with key partners in the AMR response.
  • 16. ACCELERATING DIAGNOSTICS USE TO PREVENT AMR14 Results and impact of the different interventions will be monitored through robust and standardized processes, and results widely disseminated through partnering networks and other channels. A step-change in diagnostic use is possible, as has been demonstrated for malaria and HIV where we have seen a rapid transformation of the diagnostics landscape in LMICs within a decade. Change for AMR will rely on strong partnerships and coordination. Funding for scalable and innovative interventions to overcome barriers and accelerate diagnostic impacts is critical. In combination, our priority interventions will save global goods by prolonging the life span of existing diagnostics, save health by ensuring better and timelier treatment, and save money both by reducing the use of antibiotics and the health impact of antibiotic resistance. FIND recognizes the burden caused by drug resistant TB, HIV and malaria, and their role in contributing to the global AMR challenge. However, the focus of this investment case will specifically be on pathogens and syndromes not already addressed in existing programmes. FIND’s AMR strategy will require a funding commitment of ~$72M to drive the work divided into three phases spanning the first six years, while expecting a 10-year programme lifecycle (additional funding to be identified in the later phases). Phases have been structured so that key deliverables must be completed to allow for next phase prioritization and maturation of the initiative. Support for the WHO’s Essential Diagnostics List will be a priority during Phase 1 and Phase 2 to ensure alignment and clarity on priorities. Phase 1 will focus on establishing the key partnerships and aligning on priorities in AMR beyond fever. Market understanding on the impact of diagnostics in AMR will be established and priority activities will be implemented across development, policy, and access. An R&D portfolio will be built for at least two priority target product profiles. Prioritized clinical scenarios, publication of landscapes and TPPs, and establishing a virtual sample bank and a decision-aid package combining algorithms, software and simple diagnostics will demonstrate early impact. Multi- centre studies will be conducted to demonstrate impact of at least three triaging tools. Study data and support for the WHO Essential Diagnostics List will inform priorities for Phase 2 as the work begins to expand. INVESTMENT NEED Phase 1: Launch of AMR Strategy Years: 2018 - 2019 Funding Commitment: $17M
  • 17. 15 FIND’s fever programme, which includes some of the targeted activities here, is well underway, and broader TPP and landscaping work has started. Establishing and operationalizing partnerships will be among the initial priorities. Please reach out to catharina.boehme@finddx.org and cassandra.kelly@ finddx.org if you are interested in partnering with us on this important programme. Phase 3 will continue to mature R&D portfolios and deliver three new diagnostic solutions while intensifying activities and in-country demonstrations to drive policy change, and to ensure uptake and adoption of game-changing diagnostics. The work started in Phase 1, and continued in Phase 2, around the establishment of a virtual sample bank will be matured to enable the development of emerging technologies. Definition and demonstration of additional replicable service delivery models in at least three countries will ensure impact of the developed solutions. New initiatives and opportunities will be clearly defined to inform how the strategy should evolve into Phase 4 to support the global needs in AMR. NEXT STEPS Phase 2: Implement & Expand Phase 3: Continue at scale Years: 2020 - 2021 Years: 2022 - 2023 Funding Commitment: $30M Funding Commitment: $25M n Phase 2, the strategy will mature into established pipelines encompassing existing and emerging tools with investments into an expanded R&D portfolio, including two new priorities. Demonstration studies for at least four emerging diagnostic tools will demonstrate impact. Focus on expanding the ReSeq database to standardize resistance profiles for pathogens beyond TB will support global development and surveillance efforts in the fight against AMR. At least two replicable service delivery models will be defined and implemented across three to five countries to ensure uptake of solutions. In-country champion networks will be established to facilitate change at the local and national levels and ensure a sustainable hand-off of projects once they are completed. Connectivity solutions will be linked to AMR to facilitate local-to-global communication, data sharing and response to AMR.
  • 18. Photo credits: Cover: Ben Phillips Page 17: Ben Phillips © FIND 2018 Production and editing: FIND Communications Design and layout: Minthical Campus Biotech Chemin des Mines 9 - 1202 Geneva Switzerland T: +41 (0)22 710 05 90 F: +41 (0)22 710 05 99 www.finddx.org
  • 19.