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INTRODUCTION TO
CHROMATOGRAPHY
BY-SUBHASMITH PRADHAN
 Chromatography is an important biophysical technique that enables
the separation, identification, and purification of the components of a
mixture for qualitative and quantitative analysis.
 The Russian botanist Mikhail Tswett coined the term chromatography
in 1906.
 The first analytical use of chromatography was described by James
and Martin in 1952, for the use of gas chromatography for the
analysis of fatty acid mixtures.
 A wide range of chromatographic procedures makes use of differences
in size, binding affinities, charge, and other properties to separate
materials.
 It is a powerful separation tool that is used in all branches of science
and is often the only means of separating components from complex
mixtures.
Principle of Chromatography (how does
chromatography work)
o Chromatography is based on the principle where molecules in mixture applied onto
the surface or into the solid, and fluid stationary phase (stable phase) is separating
from each other while moving with the aid of a mobile phase.
o The factors effective on this separation process include molecular characteristics
related to adsorption (liquid-solid), partition (liquid-solid), and affinity or differences
among their molecular weights.
o Because of these differences, some components of the mixture stay longer in the
stationary phase, and they move slowly in the chromatography system, while others
pass rapidly into the mobile phase, and leave the system faster.
Three components thus form the basis of the chromatography technique.
Stationary phase: This phase is always composed of a “solid” phase or “a layer of a liquid
adsorbed on the surface solid support”.
Mobile phase: This phase is always composed of “liquid” or a “gaseous component.”
Separated molecules
The type of interaction between the stationary phase, mobile phase, and substances
containedin the mixture is the basic component effective on the separation of molecules from
each other.
Types of Chromatography
 Substances can be separated on the basis of a variety of methods and the presence of
characteristics such as size and shape, total charge, hydrophobic groups present on the
surface, and binding capacity with the stationary phase.
 This leads to different types of chromatography techniques, each with their own
instrumentation and working principle.
 For instance, four separation techniques based on molecular characteristics and
interaction type use mechanisms of ion exchange, surface adsorption, partition, and
size exclusion.
 Other chromatography techniques are based on the stationary bed, including column,
thin layer, and paper chromatography.
Commonly employed chromatography
techniques include:
1. Column chromatography
2. Ion-exchange chromatography
3. Gel-permeation (molecular sieve) chromatography
4. Affinity chromatography
5. Paper chromatography
6. Thin-layer chromatography
7. Gas chromatography (GS)
8. Dye-ligand chromatography
9. Hydrophobic interaction chromatography
10. Pseudoaffinity chromatography
11. High-pressure liquid chromatography (HPLC)
Applications of Chromatography
Pharmaceutical sector
 To identify and analyze samples for the presence of trace elements or
chemicals.
 Separation of compounds based on their molecular weight and
element composition.
 Detects the unknown compounds and purity of mixture.
 In drug development.
Chemical industry
 In testing water samples and also checks air quality.
 HPLC and GC are very much used for detecting various contaminants
such as polychlorinated biphenyl (PCBs) in pesticides and oils.
 In various life sciences applications
Food Industry
 In food spoilage and additive detection
 Determining the nutritional quality of food
Forensic Science
 In forensic pathology and crime scene testing like analyzing blood and
hair samples of crime place.
Molecular Biology Studies
 Various hyphenated techniques in chromatography such as EC-LC-MS
are applied in the study of metabolomics and proteomics along with
nucleic acid research.
 HPLC is used in Protein Separation like Insulin Purification, Plasma
Fractionation, and Enzyme Purification and also in various
departments like Fuel Industry, biotechnology, and biochemical
processes.
Paper chromatography :-
Paper chromatography is a technique that involves placing a small dot or line of sample
solution onto a strip of chromatography paper. The paper is placed in a jar containing a
shallow layer of solvent and sealed. As the solvent rises through the paper, it meets the
sample mixture, which starts to travel up the paper with the solvent.
Rf=
𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑡𝑟𝑎𝑣𝑒𝑙𝑙𝑒𝑑 𝑏𝑦 𝑡ℎ𝑒 𝑠𝑢𝑏𝑠𝑡𝑎𝑛𝑐𝑒
𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑡𝑟𝑎𝑣𝑒𝑙𝑙𝑒𝑑 𝑏𝑦 𝑡ℎ𝑒 𝑠𝑜𝑙𝑣𝑒𝑛𝑡 𝑓𝑟𝑜𝑛𝑡
The Rf value helps for the identification of unknown.
Sometimes,it is rather difficult to separate a complex mixture of substances by a single run
with one solvent system. In such a case, a second run is carried out by a different solvent
system, in a direction perpendicular to the first run. This is referred to as two dimensional
chromatography.
Thin layer chromatography:-
Thin layer chromatography (TLC) is a widely employed laboratory technique and is similar
to paper chromatography. However, instead of using a stationary phase of paper, it involves a
stationary phase of a thin layer of adsorbent like silica gel, alumina, or cellulose . Compared
to paper, it has the advantage of faster runs, better separations, and the choice between
different adsorbents.
GAS-LIQUID CHROMATOGRAPHY:-
 Gas chromatography (GC), also sometimes known as Gas-Liquid chromatography,
(GLC), is a separation technique in which the mobile phase is a gas.It is the method
of choice for the separation of volatile substances or the volatile derivatives of certain
non-volatile substances.
 Stationary phase is an inert solid material impregnated with a non-volatile liquid.
 In gas chromatography, a sample is rapidly heated and vaporized at the injection port.
The sample is transported through the column by a mobile phase consisiting of an
inert gas. Sample components are separated based on their boiling points and relative
affinity for the stationary phase, which is most often a viscous liquid (wax) within the
column. The higher a component's affinity for the stationary phase, the slower it
comes off the column. The components are then detected and represented as peaks on
a chromatogram.
 The mixture of volatile material is injected into the column along with the mobile
phase.
 The separation of the volatile mixture is based on the partition of the components
between the mobile phase(gas) and stationary phase (liq.), hence the name GAS-
LIQUID CHROMATOGRAPHY.
 It is well suited for use in the petrochemical, environmental monitoring and industrial
chemical fields.
 Sensitive, rapid and reliable.
ADSORPTION TLC:-
 Adsorbents such as activated silica gel, alumina, kieselguhr are used.
ADSORPTION COLUMN CHROMATOGRAPHY:-
 Column chromatography is a separation technique in which the stationary bed is
within a tube. Adsorbents are packed into a column in a glass tube. This serves as the
stationary phase, leaving an open unrestricted path for the mobile phase in the middle
of the tube.
 Adsorbents such as silica gel, alumina, charcoal powder & calcium hydroxyapatite
are used.
 The sample mixture in a solvent is loaded on this column. The individual compounds
get differentially adsorbed on to the adsorbent.
 The elution is carried out by the buffer system which is the mobile phase.
 The individual compounds come out of the column at different rates which may be
collected separately & identified.
COLUMN CHROMATOGRAPHY
ION EXCHANGE CHROMATOGRAPHY:-
 Ion exchange chromatography (usually referred to as ion chromatography) uses an
ion exchange mechanism to separate molecules on the basis of their electrical
charges. Ion exchange chromatography uses a charged stationary phase to separate
charged compounds including anions, cations , amino acids, peptides, and proteins.
 Cation exchangers & anion exchangers are used as ion exchange resins.
 In conventional methods the stationary phase is an ion exchange resin that carries
charged functional groups that interact with oppositely charged groups of the
compound to retain.
ION EXCHANGE CHROMATOGRAPHY
GEL FILTRATION CHROMATOGRAPHY:-
 Size-exclusion chromatography (SEC) is also known as gel permeation
chromatography (GPC) or gel filtration chromatography and separates molecules
according to their size, shape & molecular weight.
 It is also referred to as molecular sieving or molecular exclusion chromatography.
 Smaller molecules are able to enter the pores of the media and, therefore, molecules
are trapped and removed from the flow of the mobile phase. However, molecules that
are larger than the average pore size of the packing are excluded and thus suffer
essentially no retention; such species are the first to be eluted. This is how the
molecules are separated.
 It is generally a low-resolution chromatography technique and thus it is often
reserved for the final, "polishing" step of a purification. It is also useful for
determining the tertiary structure and quaternary structure of purified proteins,
especially since it can be carried out under native solution conditions.
AFFINITY CHROMATOGRAPHY:-
 Affinity chromatography is based on selective non- covalent interaction between an
analyte and specific molecules, referred to as ligands.
 The immobilized ligands act as molecular fish-hooks & selectively pick up desired
proteins while the remaining protein pass through the column.
AFFINITY CHROMATOGRAPHY
HIGH PERFORMANCE LIQUID CHROMATOGRAPHY (HPLC ):-
 Liquid chromatography (LC) is a separation technique in which the mobile phase is a
liquid. Liquid chromatography can be carried out either in a column or a plane.
Present day liquid chromatography that generally utilizes very small packing particles
and a relatively high pressure is referred to as high performance liquid
chromatography (HPLC).
 Since the chromatographic techniques are slow & time consuming, hence the
separation can be greatly improved by using high pressure in the range of 5000-10000
psi (pounds per square inch),hence this technique is also referred to as high pressure
liquid chromatography.
 In HPLC the sample is forced by a liquid at high pressure (the mobile phase) through
a column that is packed with a stationary phase composed of irregularly or spherically
shaped particles.
 The interaction between the mobile and the stationary phase leads to the separation of
the mixture.
HIGH PERFORMANCE LIQUID CHROMATOGRAPHY

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Introduction to chromatography

  • 1. INTRODUCTION TO CHROMATOGRAPHY BY-SUBHASMITH PRADHAN  Chromatography is an important biophysical technique that enables the separation, identification, and purification of the components of a mixture for qualitative and quantitative analysis.  The Russian botanist Mikhail Tswett coined the term chromatography in 1906.  The first analytical use of chromatography was described by James and Martin in 1952, for the use of gas chromatography for the analysis of fatty acid mixtures.  A wide range of chromatographic procedures makes use of differences in size, binding affinities, charge, and other properties to separate materials.  It is a powerful separation tool that is used in all branches of science and is often the only means of separating components from complex mixtures. Principle of Chromatography (how does chromatography work) o Chromatography is based on the principle where molecules in mixture applied onto the surface or into the solid, and fluid stationary phase (stable phase) is separating from each other while moving with the aid of a mobile phase.
  • 2. o The factors effective on this separation process include molecular characteristics related to adsorption (liquid-solid), partition (liquid-solid), and affinity or differences among their molecular weights. o Because of these differences, some components of the mixture stay longer in the stationary phase, and they move slowly in the chromatography system, while others pass rapidly into the mobile phase, and leave the system faster. Three components thus form the basis of the chromatography technique. Stationary phase: This phase is always composed of a “solid” phase or “a layer of a liquid adsorbed on the surface solid support”. Mobile phase: This phase is always composed of “liquid” or a “gaseous component.” Separated molecules The type of interaction between the stationary phase, mobile phase, and substances containedin the mixture is the basic component effective on the separation of molecules from each other. Types of Chromatography  Substances can be separated on the basis of a variety of methods and the presence of characteristics such as size and shape, total charge, hydrophobic groups present on the surface, and binding capacity with the stationary phase.  This leads to different types of chromatography techniques, each with their own instrumentation and working principle.
  • 3.  For instance, four separation techniques based on molecular characteristics and interaction type use mechanisms of ion exchange, surface adsorption, partition, and size exclusion.  Other chromatography techniques are based on the stationary bed, including column, thin layer, and paper chromatography. Commonly employed chromatography techniques include: 1. Column chromatography 2. Ion-exchange chromatography 3. Gel-permeation (molecular sieve) chromatography 4. Affinity chromatography 5. Paper chromatography 6. Thin-layer chromatography 7. Gas chromatography (GS) 8. Dye-ligand chromatography 9. Hydrophobic interaction chromatography 10. Pseudoaffinity chromatography 11. High-pressure liquid chromatography (HPLC) Applications of Chromatography Pharmaceutical sector  To identify and analyze samples for the presence of trace elements or chemicals.  Separation of compounds based on their molecular weight and element composition.  Detects the unknown compounds and purity of mixture.  In drug development. Chemical industry  In testing water samples and also checks air quality.  HPLC and GC are very much used for detecting various contaminants such as polychlorinated biphenyl (PCBs) in pesticides and oils.  In various life sciences applications Food Industry  In food spoilage and additive detection  Determining the nutritional quality of food Forensic Science  In forensic pathology and crime scene testing like analyzing blood and hair samples of crime place. Molecular Biology Studies
  • 4.  Various hyphenated techniques in chromatography such as EC-LC-MS are applied in the study of metabolomics and proteomics along with nucleic acid research.  HPLC is used in Protein Separation like Insulin Purification, Plasma Fractionation, and Enzyme Purification and also in various departments like Fuel Industry, biotechnology, and biochemical processes. Paper chromatography :- Paper chromatography is a technique that involves placing a small dot or line of sample solution onto a strip of chromatography paper. The paper is placed in a jar containing a shallow layer of solvent and sealed. As the solvent rises through the paper, it meets the sample mixture, which starts to travel up the paper with the solvent. Rf= 𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑡𝑟𝑎𝑣𝑒𝑙𝑙𝑒𝑑 𝑏𝑦 𝑡ℎ𝑒 𝑠𝑢𝑏𝑠𝑡𝑎𝑛𝑐𝑒 𝐷𝑖𝑠𝑡𝑎𝑛𝑐𝑒 𝑡𝑟𝑎𝑣𝑒𝑙𝑙𝑒𝑑 𝑏𝑦 𝑡ℎ𝑒 𝑠𝑜𝑙𝑣𝑒𝑛𝑡 𝑓𝑟𝑜𝑛𝑡 The Rf value helps for the identification of unknown.
  • 5. Sometimes,it is rather difficult to separate a complex mixture of substances by a single run with one solvent system. In such a case, a second run is carried out by a different solvent system, in a direction perpendicular to the first run. This is referred to as two dimensional chromatography. Thin layer chromatography:- Thin layer chromatography (TLC) is a widely employed laboratory technique and is similar to paper chromatography. However, instead of using a stationary phase of paper, it involves a stationary phase of a thin layer of adsorbent like silica gel, alumina, or cellulose . Compared to paper, it has the advantage of faster runs, better separations, and the choice between different adsorbents. GAS-LIQUID CHROMATOGRAPHY:-  Gas chromatography (GC), also sometimes known as Gas-Liquid chromatography, (GLC), is a separation technique in which the mobile phase is a gas.It is the method
  • 6. of choice for the separation of volatile substances or the volatile derivatives of certain non-volatile substances.  Stationary phase is an inert solid material impregnated with a non-volatile liquid.  In gas chromatography, a sample is rapidly heated and vaporized at the injection port. The sample is transported through the column by a mobile phase consisiting of an inert gas. Sample components are separated based on their boiling points and relative affinity for the stationary phase, which is most often a viscous liquid (wax) within the column. The higher a component's affinity for the stationary phase, the slower it comes off the column. The components are then detected and represented as peaks on a chromatogram.  The mixture of volatile material is injected into the column along with the mobile phase.  The separation of the volatile mixture is based on the partition of the components between the mobile phase(gas) and stationary phase (liq.), hence the name GAS- LIQUID CHROMATOGRAPHY.  It is well suited for use in the petrochemical, environmental monitoring and industrial chemical fields.  Sensitive, rapid and reliable. ADSORPTION TLC:-  Adsorbents such as activated silica gel, alumina, kieselguhr are used.
  • 7. ADSORPTION COLUMN CHROMATOGRAPHY:-  Column chromatography is a separation technique in which the stationary bed is within a tube. Adsorbents are packed into a column in a glass tube. This serves as the stationary phase, leaving an open unrestricted path for the mobile phase in the middle of the tube.  Adsorbents such as silica gel, alumina, charcoal powder & calcium hydroxyapatite are used.  The sample mixture in a solvent is loaded on this column. The individual compounds get differentially adsorbed on to the adsorbent.  The elution is carried out by the buffer system which is the mobile phase.  The individual compounds come out of the column at different rates which may be collected separately & identified.
  • 8. COLUMN CHROMATOGRAPHY ION EXCHANGE CHROMATOGRAPHY:-  Ion exchange chromatography (usually referred to as ion chromatography) uses an ion exchange mechanism to separate molecules on the basis of their electrical charges. Ion exchange chromatography uses a charged stationary phase to separate charged compounds including anions, cations , amino acids, peptides, and proteins.  Cation exchangers & anion exchangers are used as ion exchange resins.  In conventional methods the stationary phase is an ion exchange resin that carries charged functional groups that interact with oppositely charged groups of the compound to retain. ION EXCHANGE CHROMATOGRAPHY GEL FILTRATION CHROMATOGRAPHY:-  Size-exclusion chromatography (SEC) is also known as gel permeation chromatography (GPC) or gel filtration chromatography and separates molecules according to their size, shape & molecular weight.  It is also referred to as molecular sieving or molecular exclusion chromatography.  Smaller molecules are able to enter the pores of the media and, therefore, molecules are trapped and removed from the flow of the mobile phase. However, molecules that are larger than the average pore size of the packing are excluded and thus suffer essentially no retention; such species are the first to be eluted. This is how the molecules are separated.  It is generally a low-resolution chromatography technique and thus it is often reserved for the final, "polishing" step of a purification. It is also useful for determining the tertiary structure and quaternary structure of purified proteins, especially since it can be carried out under native solution conditions.
  • 9. AFFINITY CHROMATOGRAPHY:-  Affinity chromatography is based on selective non- covalent interaction between an analyte and specific molecules, referred to as ligands.  The immobilized ligands act as molecular fish-hooks & selectively pick up desired proteins while the remaining protein pass through the column.
  • 10. AFFINITY CHROMATOGRAPHY HIGH PERFORMANCE LIQUID CHROMATOGRAPHY (HPLC ):-  Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid. Liquid chromatography can be carried out either in a column or a plane. Present day liquid chromatography that generally utilizes very small packing particles and a relatively high pressure is referred to as high performance liquid chromatography (HPLC).  Since the chromatographic techniques are slow & time consuming, hence the separation can be greatly improved by using high pressure in the range of 5000-10000 psi (pounds per square inch),hence this technique is also referred to as high pressure liquid chromatography.  In HPLC the sample is forced by a liquid at high pressure (the mobile phase) through a column that is packed with a stationary phase composed of irregularly or spherically shaped particles.  The interaction between the mobile and the stationary phase leads to the separation of the mixture.
  • 11. HIGH PERFORMANCE LIQUID CHROMATOGRAPHY