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RESPIRATORY TRACT INFECTIONS
Dr. Mohit Bhatia
Assistant Professor
Department of Microbiology
UPPER RESPIRATORY TRACT
INFECTIONS
• Infections of airway
above glottis or vocal
cords
• Tonsillitis
• Pharyngitis
• Laryngitis
• Sinusitis
• Otitis media
• Rhinitis
1) Cough
2) Sore throat
3) Running nose
4) Nasal congestion
5) Headache
6) Low-grade fever
7) Facial pressure
8) Sneezing
Rhinitis or common cold
• Mostly caused by viruses:
• Rhinovirus
• Coronavirus
• Adenovirus
• Influenza virus
• Parainfluenza virus
• Human metapneumovirus
• Respiratory syncytial virus
Sinusitis
• Symptoms: Headache/facial pain, nasal mucus, Plugged nose
• Agents of acute sinusitis:
• Viruses (most common cause): Rhinoviruses, Influenza viruses,
Parainfluenza viruses
• Bacterial agents: Streptococcus pneumoniae, Haemophilus
influenzae, Moraxella catarrhalis, Pseudomonas and other gram
negative bacilli (nosocomial sinusitis)
• Agents of chronic sinusitis: Obligate anaerobes, Staphylococcus
aureus
PHARYNGITIS & TONSILLITIS
PHARYNGITIS & TONSILLITIS
LARYNGITIS
• Influenza virus
• Parainfluenza virus
• Rhinovirus
• Adenovirus
• Coronavirus
• Human metapneumovirus
• Streptococcus pyogenes
• C. diphtheriae
• Epstein-Barr virus
 Hoarseness of voice
 Lowering & deepening of
voice
LARYNGOTRACHEOBRONCHITIS
(Croup)
Children, <3 years age
Inspiratory stridor
Hoarseness
Fever
Cough (barking)
 Parainfluenza virus (M/C)
 Influenza virus
 Respiratory syncytial virus
 Adenoviruses
Epiglottis
• Edema and inflammation of epiglottis and soft
tissue above vocal cords
• Age: children 2–6 years
• Symptoms: Fever, Difficulty in swallowing,
Inspiratory stridor
• Most common agent: Haemophilus influenzae
type b
Lower Respiratory Tract Infection
Community acquired Hospital acquired
PNEUMONIA
Community-acquired Pneumonia
(CAP)
• Streptococcus pneumoniae
• Mycoplasma pneumoniae
• Chlamydophila pneumoniae
• Chlamydia psittaci
• Legionella spp.
• Coxiella burnetii
• Viruses (Influenza, Adenovirus, Parainfluenza, RSV)
CURB-65score
- C (Confusion) = 1 point
- U (blood urea nitrogen >19 mg/dL) = 1 point
- R (respiratory rate >30 min) = 1 point
- B (BP <90/60) = 1 point
- 65 (Age ≥65 years) = 1 point
• Higher the score, greater is the mortality
• If the score ≤1, outpatient therapy is indicated
If the score >1, patient should be hospitalized
Hospital-acquired Pneumonia (hAP)
• VAP
• CPIS
CLINICAL PULMONARY INFECTION
SCORE
CAUSATIVE ORGANISMS
Gram-negative bacilli (most common)
MDR non-fermenters
MDR Enterobacteriaceae
Staphylococcus aureus (both MRSA and MSSA)
S. pneumoniae (rarely, in early stage)
Influenza, adenovirus, parainfluenza, RSV
LOBAR PNEUMONIA
INTERSTITIAL PNEUMONIA
BRONCHITIS
• Inflammation of bronchus, which occurs
either as an extension of upper respiratory
tract infection such as influenza or may be
caused directly by bacterial agents such as
Bordetella.
• Common symptoms - fever, cough, sputum
production, and rarely croup- like features
BRONCHITIS
Bacterial agents:
 B. pertussis
 B. parapertussis
 Mycoplasma pneumoniae
 Chlamydophila pneumoniae
Viral agents:
 Influenza viruses
 Adenoviruses
 Rhinoviruses
 Coronaviruses
BRONCHIOLITIS
• Inflammation of the smaller airways (bronchioles)
• It presents as an acute viral infection that
primarily occurs in children less than 2 year
• Symptoms: Acute onset of wheeze, dyspnea,
cough, rhinorrhea, and respiratory distress
• Respiratory syncytial viruses account for 40–80%
BRONCHIOLITIS
• Respiratory syncytial viruses
• Parainfluenza viruses
• Rhinoviruses
• Influenza viruses
• Adenoviruses
• Enterovirus
• Human metapneumovirus
Laboratory Diagnosis
For URTI:
– Throat swab
– Nasopharyngeal aspirate
For LRTI:
• Sputum
• Induced sputum
• Tracheal aspirate
• Bronchoalveolar lavage (BAL)
Microscopy
• Albert staining
• Gram staining
• Acid fast staining
• GMS stain
• Immunofluorescence microscopy of
nasopharyngeal aspirate
Culture
• For bacteriological culture: Blood agar, chocolate agar and
MacConkey agar
• For isolation of C. diphtheriae: Loeffler’s serum slope and
potassium tellurite agar
• For M. tuberculosis: LJ medium and incubated for up to 6–
8 weeks
• For fungal pathogen isolation: Sabouraud dextrose agar
• Viral - Appropriate cell lines
CARROM COIN APPEARANCE OF
Streptococcus pneumoniae
SATELLITISM IN H. influenzae
COLONIES OF Candida species ROUGH, TOUGH & BUFF COLONIES OF
Mycobacterium tuberculosis
FRIED EGG colonies of Mycoplasma spp.
TREATMENT
• Community-acquired pneumonia (CAP)
Empiric regimen is determined by presence of co-
morbidity and prediction of prognosis by CURB-65
scoring system
• CAP, hospitalized (if CURB65 score >1):
- IV ceftriaxone plus azithromycin or
- IV levofloxacin
- Add vancomycin if CA-MRSA suspected
• CAP, outpatient (if CURB-65 score ≤1):
Oral azithromycin or azithromycin + amoxyclav
Oral levofloxacin
Hospital-acquired pneumonia (HAP)
• Empirical therapy: Gram-negative (e.g.
piperacillin-tazobactam or meropenem) +
Gram-positive coverage (e.g. vancomycin)
• Definitive therapy: The empirical treatment
should be tailored based on the organism
isolated and its
Respiratory_Tract_Infection

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Respiratory_Tract_Infection

  • 1. RESPIRATORY TRACT INFECTIONS Dr. Mohit Bhatia Assistant Professor Department of Microbiology
  • 2.
  • 3. UPPER RESPIRATORY TRACT INFECTIONS • Infections of airway above glottis or vocal cords • Tonsillitis • Pharyngitis • Laryngitis • Sinusitis • Otitis media • Rhinitis 1) Cough 2) Sore throat 3) Running nose 4) Nasal congestion 5) Headache 6) Low-grade fever 7) Facial pressure 8) Sneezing
  • 4. Rhinitis or common cold • Mostly caused by viruses: • Rhinovirus • Coronavirus • Adenovirus • Influenza virus • Parainfluenza virus • Human metapneumovirus • Respiratory syncytial virus
  • 5. Sinusitis • Symptoms: Headache/facial pain, nasal mucus, Plugged nose • Agents of acute sinusitis: • Viruses (most common cause): Rhinoviruses, Influenza viruses, Parainfluenza viruses • Bacterial agents: Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, Pseudomonas and other gram negative bacilli (nosocomial sinusitis) • Agents of chronic sinusitis: Obligate anaerobes, Staphylococcus aureus
  • 8. LARYNGITIS • Influenza virus • Parainfluenza virus • Rhinovirus • Adenovirus • Coronavirus • Human metapneumovirus • Streptococcus pyogenes • C. diphtheriae • Epstein-Barr virus  Hoarseness of voice  Lowering & deepening of voice
  • 9. LARYNGOTRACHEOBRONCHITIS (Croup) Children, <3 years age Inspiratory stridor Hoarseness Fever Cough (barking)  Parainfluenza virus (M/C)  Influenza virus  Respiratory syncytial virus  Adenoviruses
  • 10. Epiglottis • Edema and inflammation of epiglottis and soft tissue above vocal cords • Age: children 2–6 years • Symptoms: Fever, Difficulty in swallowing, Inspiratory stridor • Most common agent: Haemophilus influenzae type b
  • 11. Lower Respiratory Tract Infection Community acquired Hospital acquired PNEUMONIA
  • 12. Community-acquired Pneumonia (CAP) • Streptococcus pneumoniae • Mycoplasma pneumoniae • Chlamydophila pneumoniae • Chlamydia psittaci • Legionella spp. • Coxiella burnetii • Viruses (Influenza, Adenovirus, Parainfluenza, RSV)
  • 13. CURB-65score - C (Confusion) = 1 point - U (blood urea nitrogen >19 mg/dL) = 1 point - R (respiratory rate >30 min) = 1 point - B (BP <90/60) = 1 point - 65 (Age ≥65 years) = 1 point • Higher the score, greater is the mortality • If the score ≤1, outpatient therapy is indicated If the score >1, patient should be hospitalized
  • 16. CAUSATIVE ORGANISMS Gram-negative bacilli (most common) MDR non-fermenters MDR Enterobacteriaceae Staphylococcus aureus (both MRSA and MSSA) S. pneumoniae (rarely, in early stage) Influenza, adenovirus, parainfluenza, RSV
  • 19. BRONCHITIS • Inflammation of bronchus, which occurs either as an extension of upper respiratory tract infection such as influenza or may be caused directly by bacterial agents such as Bordetella. • Common symptoms - fever, cough, sputum production, and rarely croup- like features
  • 20. BRONCHITIS Bacterial agents:  B. pertussis  B. parapertussis  Mycoplasma pneumoniae  Chlamydophila pneumoniae Viral agents:  Influenza viruses  Adenoviruses  Rhinoviruses  Coronaviruses
  • 21. BRONCHIOLITIS • Inflammation of the smaller airways (bronchioles) • It presents as an acute viral infection that primarily occurs in children less than 2 year • Symptoms: Acute onset of wheeze, dyspnea, cough, rhinorrhea, and respiratory distress • Respiratory syncytial viruses account for 40–80%
  • 22. BRONCHIOLITIS • Respiratory syncytial viruses • Parainfluenza viruses • Rhinoviruses • Influenza viruses • Adenoviruses • Enterovirus • Human metapneumovirus
  • 23. Laboratory Diagnosis For URTI: – Throat swab – Nasopharyngeal aspirate For LRTI: • Sputum • Induced sputum • Tracheal aspirate • Bronchoalveolar lavage (BAL)
  • 24. Microscopy • Albert staining • Gram staining • Acid fast staining • GMS stain • Immunofluorescence microscopy of nasopharyngeal aspirate
  • 25.
  • 26. Culture • For bacteriological culture: Blood agar, chocolate agar and MacConkey agar • For isolation of C. diphtheriae: Loeffler’s serum slope and potassium tellurite agar • For M. tuberculosis: LJ medium and incubated for up to 6– 8 weeks • For fungal pathogen isolation: Sabouraud dextrose agar • Viral - Appropriate cell lines
  • 27. CARROM COIN APPEARANCE OF Streptococcus pneumoniae SATELLITISM IN H. influenzae
  • 28. COLONIES OF Candida species ROUGH, TOUGH & BUFF COLONIES OF Mycobacterium tuberculosis
  • 29. FRIED EGG colonies of Mycoplasma spp.
  • 30. TREATMENT • Community-acquired pneumonia (CAP) Empiric regimen is determined by presence of co- morbidity and prediction of prognosis by CURB-65 scoring system • CAP, hospitalized (if CURB65 score >1): - IV ceftriaxone plus azithromycin or - IV levofloxacin - Add vancomycin if CA-MRSA suspected
  • 31. • CAP, outpatient (if CURB-65 score ≤1): Oral azithromycin or azithromycin + amoxyclav Oral levofloxacin
  • 32. Hospital-acquired pneumonia (HAP) • Empirical therapy: Gram-negative (e.g. piperacillin-tazobactam or meropenem) + Gram-positive coverage (e.g. vancomycin) • Definitive therapy: The empirical treatment should be tailored based on the organism isolated and its

Hinweis der Redaktion

  1. Symptoms: Pharynx and/or tonsils become inflamed, red, swollen, and show exudate, and sometimes a membrane is formed Viruses: (most common cause) Influenza virus, Parainfluenza virus, Coxsackievirus A, Rhinovirus, Coronavirus, Epstein-Barr virus, Adenoviruses
  2. Bacteria: Streptococcus pyogenes (most common bacterial cause), Streptococcus groups C and G, Arcanobacterium species, Corynebacterium diphtheriae and C. ulcerans, Mycoplasma pneumoniae Vincent angina - Treponema vincentii & Leptotrichia buccalis Fungal: Candida albicans
  3. Non-productive, harsh, barking cough
  4. Agents: followed by Mycoplasma pneumoniae CURB65 scoring system - To predict prognosis of CAP Score >1 patient should be hospitalized Else the treatment can be given on outpatient basis No co-morbidity: Streptococcus pneumoniae (most common) Atypical pathogens: Chlamydophila pneumoniae and C. psittaci Legionella and Mycoplasma Coxiella burnetii (Q fever) Viral pneumonia (influenza, adenovirus, parainfluenza, RSV) Associated with Co-morbidity: Alcoholism: S. pneumoniae, H. influenzae COPD: H. influenzae, M. catarrhalis, S. pneumoniae Post-CVA-aspiration: S. pneumoniae Post-obstruction of bronchi: pneumoniae, anaerobes Post-influenza: S. pneumoniae, S.aureus
  5. Hospitalized patients have increased risk of developing pneumonia; most of which are ventilator-associated pneumonia VAP can be clinically diagnosed by Clinical Pulmonary Infection (CPIS) Likelihood of VAP is higher when total CPIS is >6
  6. SCORE:0 NO CORRELATION BETWEEN MICROSCOPY AND CULTURE SCORE:2 POSITIVE CORRELATION BETWEEN MICROSCOPY AND CULTURE
  7. Gram-negative bacilli (most common) MDR non-fermenters (Pseudomonas & Acinetobacter) MDR Enterobacteriaceae (E. coli, Klebsiella & Enterobacter) Staphylococcus aureus (both MRSA and MSSA) S. pneumoniae (rarely, in early stage) Influenza, adenovirus, parainfluenza, RSV
  8. Fever, chills, chest pain and cough Based on area of lungs involved, and type of cough produced Lobar pneumonia infecting lung parenchyma (alveoli) Consolidation and productive cough with purulent sputum - Mostly caused by pyogenic organisms : Pneumococcus Haemophilus influenzae Staphylococcus aureus Gram-negative bacilli.
  9. Infection occurs in interstitial space of lungs Cough is characteristically non-productive Caused by : Chlamydophila pneumoniae Mycoplasma pneumoniae Viral pneumonia Legionella species
  10. Throat swab: Two swabs should be collected, one for direct examination, other one for culture A part of the membrane, if present Nasopharyngeal aspirate for viral diagnosis or for B.pertussis
  11. Albert staining - metachromatic granules in the ends of the bacilli  of C. diphtheriae Gram staining Detect the quality of the sputum Pus cells >25/low power field and epithelial cells <5/low power field  good quality sputum Acid fast staining - M. tuberculosis GMS stain - Pneumocystis jirovecii Immunofluorescence microscopy of nasopharyngeal aspirate
  12. BARTLETT CRITERIA, MURRAY WASHINGTON CRITERIA
  13. Streptococcus pneumoniae Pus cells >25/LPF and epithelial cells <10/LPF gram-positive cocci in pair, lanceolate shaped Alfa hemolytic, draughtsman-shaped colonies on blood agar Sensitive to optochin Bile soluble, ferments inulin Haemophilus influenzae Pus cells >25/LPF and epithelial cells <10/LPF Pleomorphic gram-negative bacilli Satellitism on blood agar with S. aureus streak line Staphylococcus aureus Pus cells >25/LPF and epithelial cells <10/LPF gram-positive cocci in clusters BA- golden yellow hemolytic colonies Catalase positive, coagulase positive Gram-negative bacilli E. coli, Klebsiella, Pseudomonas, etc.) Pus cells >25/LPF and epithelial cells <10/LPF gram-negative bacilli Identification is based on: Growth on MacConkey agar (LF or NLF colonies) and Biochemical reactions (ICUT: indole, citrate, urease, TSI)
  14. Chlamydophila pneumoniae Direct immunofluorescence test Antigen detection by enzyme immunoassay Nucleic acid amplification test (NAAT) detecting specific genes Serology-antibody detection by - CFT using LPS antigen - ELISA using recombinant LPS antigen - Micro-IF test using outer membrane protein antigen Legionella pneumophila Pus cells >25/LPF and epithelial cells <10/LPF Detection of specific antigen in sputum, urine Growth on BCYE medium Mycoplasma pneumoniae Direct immunofluorescence test Capture ELISA-detecting antigen (P1 adhesin) PCR targeting P1 adhesin gene Culture-fried egg colonies on PPLO agar Antibody detection - Non-specific test (cold agglutination test) Specific test (e.g. ELISA) Viral pneumonia Detection of specific viral antigen in sputum Detection of specific viral genes in sputum (PCR)