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BIOLOGY 189
 The cell
The Cell
 Cell theory: first unifying theory of
  biology.

   Cells: fundamental units of life

 All organisms are composed of cells

    All cells come from preexisting
                  cells.
The Cell
 Most cells are tiny, in order to maintain
  a good surface area-to-volume ratio.

 The volume of a cell determines its
  metabolic activity relative to time

 The surface area of a cell determines
  the number of substances that can
  enter or leave the cell
The Scale of Life
The cell
Two types of microscopes to visualize small
 cells:

Light microscopes²use glass lenses and
 light
  Resolution = 0.2 ȝm

Electron microscopes²electromagnets
 focus an electron beam
  Resolution = 2.0 nm
Microscopy
The Cell
Plasma membrane:
‡ Selectively permeable barrier . Allows
  cells to maintain a constant internal
  environment

‡ Important in communication and
  receiving signals

‡ Has proteins for binding and adhering
  to adjacent cells
The cell
Two types of cells:

Prokaryotes are without
 membrane-enclosed compartments.

Eukaryotes have membrane-
 enclosed compartments called
 organelles, such as the nucleus.
The cell
Prokaryotic Cells Do Not Have a Nucleus
 Prokaryotic cells

 ‡ Enclosed by a plasma membrane

 ‡ DNA located in the nucleoid

 The rest of the cytoplasm consists of:
   Cytosol (water and dissolved
    material) and suspended particles
   Ribosomes²sites of protein
    synthesis
Prokaryotic Cell
Prokaryotic Cells
 ‡ Bacteria cell walls contain peptidoglycans

 ‡ Other bacteria have a slimy layer of
   polysaccharides, called the capsule.

 ‡ Some prokaryotes swim by means of
   flagella

 ‡ Some rod-shaped bacteria have a network
   of actin-like protein structures to help
   maintain their shape.
Prokaryotic Flagella
Eukaryotic Cells Have a Nucleus and Other
    Membrane-Bound Compartments

‡Eukaryotic cells
  ‡ have a plasma membrane,
  ‡ cytoplasm, and ribosomes,
  ‡ also membrane-enclosed
    compartments called organelles.

‡Each organelle plays a specific
 role in cell functioning.
Eukaryotic Cells
Eukaryotic Cells
Eukaryotic Cells
 ‡Ribosomes: sites of protein
  synthesis
   ‡ Occur in both prokaryotic and
     eukaryotic cells and have similar
     structure²one larger and one smaller
     subunit.
   ‡ Each subunit consists of ribosomal
     RNA (rRNA) bound to smaller
     protein molecules
Eukaryotic cell. Ribosomes
  Not membrane-bound
   organelles
       In eukaryotes: free in the
        cytoplasm, attached to the
        endoplasmic reticulum, or inside
        mitochondria and chloroplasts.
       In prokaryotic cells, ribosomes
        float freely in the cytoplasm.
Eukaryotic Cell. The Nucleus
‡ Usually the largest organelle.

‡ Location of DNA and of DNA
  replication

‡ Site where DNA is transcribed to RNA

‡ Contains the nucleolus, where
  ribosomes begin to be assembled from
  RNA and proteins.
Eukaryotic Cells. The Nucleus
‡ Surrounded by two membranes that
  form the nuclear envelope.

‡ Nuclear pores control movement of
  molecules between nucleus and
  cytoplasm.

‡ In the nucleus, DNA combines with
  proteins to form chromatin in long, thin
  threads called chromosomes.
Eukaryotic Cell. The endomembrane system

 ‡ The endomembrane system includes
   ‡ The nuclear envelope
   ‡ Endoplasmic reticulum
   ‡ Golgi apparatus
   ‡ Lysosomes.
 ‡ Tiny, membrane-surrounded vesicles shuttle
   substances between the various components,
   as well as to the plasma membrane.
The Endomembrane System
Endoplasmic Reticulum (ER)
‡ Network of interconnected membranes
  in the cytoplasm, with a large surface
  area
‡ The ER has two distinct regions:


   Smooth ER, which lacks ribosomes

   Rough ER, with ribosomes
Smooth ER

Rough ER                         Nuclear
                                 envelope




ER lumen
Cisternae
       Ribosomes                   Transitional ER
         Transport vesicle              200 nm
  Smooth ER                  Rough ER
Endoplasmic Reticulum
   Smooth ER             Rough ER
   Synthesizes         Has bound
    lipids and           ribosomes, secrete
    steroids             glycoproteins
   Metabolizes         Distributes
    carbohydrates        transport
   Detoxifies           vesicles, proteins
    poisons              surrounded by
   Stores calcium       membranes
   Glycogen            Is a membrane
    degradation site     factory for the cell
The Golgi Apparatus
 ‡ The Golgi apparatus consists of
   flattened membranous sacs called
   cisternae
 ‡ ³Shipping and Receiving Center´
 ‡ Functions of the Golgi apparatus:
    Modifies products of the ER
    Manufactures certain macromolecules
     (polysaccharides in plants)
    Sorts and packages materials into transport
     vesicles
cis face
(³receiving´ side of Golgi                                               0.1 µm
apparatus)                         Cisternae




                             trans face
                             (³shipping´ side of Golgi   TEM of Golgi apparatus
                             apparatus)
Lysosomes
‡ Primary
  lysosomes
  originate from the
  Golgi apparatus.
  ‡ contain
    digestive
    enzymes
  ‡ Site where
    macromolecules
    are hydrolyzed
    into monomers.
Lysosomes Isolate Digestive Enzymes from the Cytoplasm
Eukaryotic Cells. Mitrochondria
 ‡ In eukaryotes, molecules are first
   broken down in the cytosol.

 ‡ The partially digested molecules enter
   the mitochondria, here chemical
   energy is converted to energy-rich
   ATP.

 ‡ Cells that require a lot of energy often
   have more mitochondria.
Eukaryotic Cells. Mitochondria

 ‡Two membranes:
   ‡ Outer membrane: porous
   ‡ Inner membrane: extensive folds
     called cristae, to increase surface
     area

 ‡The fluid-filled matrix inside the inner
  membrane contains enzymes, DNA,
  and ribosomes.
Eukaryotic Cells. Plastids
 ‡ Plant and algae cells contain plastids
   that can differentiate into organelles²
   some are used for storage.

 ‡ Chloroplast contains chlorophyll and
   is the site of photosynthesis.

 ‡ Photosynthesis converts light energy
   into chemical energy.
Eukaryotic Cells. Other organelles
 ‡ Specialized functions.

 ‡ Peroxisomes collect and break down
   toxic by-products of metabolism, such
   as H2O2, using specialized enzymes.

 ‡ Glyoxysomes, found only in plants,
   are where lipids are converted to
   carbohydrates for growth.
Eukaryotic Cell. Vacuoles
‡Mainly in plants and fungi, functions:

‡Storage of waste products and
 toxic compounds
‡Structure for plant cells²water
 enters the vacuole by osmosis,
 creating turgor pressure
Eukaryotic Cell. Vacuoles
‡Reproduction: vacuoles in flowers
 and fruits contain pigments whose
 colors attract pollinators and aid
 seed dispersal
‡Catabolism²digestive enzymes in
 seeds¶ vacuoles hydrolyze stored
 food for early growth
The Cytoskeleton Provides Strength and Movement

 The cytoskeleton

 ‡ Supports and maintains cell shape
 ‡ Holds organelles in position
 ‡ Moves organelles
 ‡ Involved in cytoplasmic streaming
 ‡ Interacts with extracellular
   structures to anchor cell in place
The Cytoskeleton Provides Strength and Movement

           Three components

Microfilaments:

‡Help a cell or parts of a cell to
 move

‡Determine cell shape

‡Made from actin
The Cytoskeleton
The Cytoskeleton Provides Strength and Movement

  Intermediate filaments:
  ‡ At least 50 different kinds

  ‡ Tough, ropelike protein assemblages,
    more permanent than other filaments

  ‡ Anchor cell structures in place

  ‡ Resist tension, maintain rigidity
The Cytoskeleton
The Cytoskeleton Provides Strength and Movement

 Microtubules:

 The largest diameter components, two
  roles:
 ‡ Form rigid internal skeleton for some
   cells or regions
 ‡ Act as a framework for motor proteins
   to move structures in the cell
The Cytoskeleton
The Cytoskeleton Provides Strength and Movement
 Microtubules line movable cell
  appendages.

 Cilia²short, usually many present,
  move with stiff power stroke and flexible
  recovery stroke

 Flagella²longer, usually one or two
  present, movement is snakelike
Cilia
Extracellular Structures Allow Cells to Communicate
           with the External Environment

 ‡ Extracellular structures are secreted
   to the outside of the plasma membrane.

 ‡ In eukaryotes, these structures have
   two components:

 ‡ A prominent fibrous macromolecule

 ‡ A gel-like medium with fibers embedded
Extracellular Structures Allow Cells to Communicate
           with the External Environment

 ‡Plant cell wall²semi-rigid structure
  outside the plasma membrane

 ‡The fibrous component is the
  cellulose.

 ‡The gel-like matrix contains cross-
  linked polysaccharides and proteins.
The Plant Cell Wall
Cell wall
       Three major roles:
 ‡ Provides support for the cell and
   limits volume by remaining rigid
 ‡ Acts as a barrier to infection
 ‡ Contributes to form during growth
   and development
An Extracellular Matrix
An Extracellular Matrix
Extracellular Structures in animal cells
    extracellular matrices in animal cells

 ‡ Hold cells together in tissues

 ‡ Contribute to physical properties of
   cartilage, skin, and other tissues

 ‡ Filter materials

 ‡ Orient cell movement during growth and
   repair
Extracellular Structures
 ‡ Cell junctions specialized structures
   that protrude from adjacent cells and
   ³glue´ them together

     ‡ Tight junctions

     ‡ Desmosomes

     ‡ Gap junctions
Junctions Link Animal Cells

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Biology 189 the_cell_spring_2012.ppt

  • 2. The Cell Cell theory: first unifying theory of biology. Cells: fundamental units of life All organisms are composed of cells All cells come from preexisting cells.
  • 3. The Cell Most cells are tiny, in order to maintain a good surface area-to-volume ratio. The volume of a cell determines its metabolic activity relative to time The surface area of a cell determines the number of substances that can enter or leave the cell
  • 5. The cell Two types of microscopes to visualize small cells: Light microscopes²use glass lenses and light Resolution = 0.2 ȝm Electron microscopes²electromagnets focus an electron beam Resolution = 2.0 nm
  • 7. The Cell Plasma membrane: ‡ Selectively permeable barrier . Allows cells to maintain a constant internal environment ‡ Important in communication and receiving signals ‡ Has proteins for binding and adhering to adjacent cells
  • 8. The cell Two types of cells: Prokaryotes are without membrane-enclosed compartments. Eukaryotes have membrane- enclosed compartments called organelles, such as the nucleus.
  • 10. Prokaryotic Cells Do Not Have a Nucleus Prokaryotic cells ‡ Enclosed by a plasma membrane ‡ DNA located in the nucleoid The rest of the cytoplasm consists of: Cytosol (water and dissolved material) and suspended particles Ribosomes²sites of protein synthesis
  • 12. Prokaryotic Cells ‡ Bacteria cell walls contain peptidoglycans ‡ Other bacteria have a slimy layer of polysaccharides, called the capsule. ‡ Some prokaryotes swim by means of flagella ‡ Some rod-shaped bacteria have a network of actin-like protein structures to help maintain their shape.
  • 14. Eukaryotic Cells Have a Nucleus and Other Membrane-Bound Compartments ‡Eukaryotic cells ‡ have a plasma membrane, ‡ cytoplasm, and ribosomes, ‡ also membrane-enclosed compartments called organelles. ‡Each organelle plays a specific role in cell functioning.
  • 17. Eukaryotic Cells ‡Ribosomes: sites of protein synthesis ‡ Occur in both prokaryotic and eukaryotic cells and have similar structure²one larger and one smaller subunit. ‡ Each subunit consists of ribosomal RNA (rRNA) bound to smaller protein molecules
  • 18. Eukaryotic cell. Ribosomes Not membrane-bound organelles In eukaryotes: free in the cytoplasm, attached to the endoplasmic reticulum, or inside mitochondria and chloroplasts. In prokaryotic cells, ribosomes float freely in the cytoplasm.
  • 19. Eukaryotic Cell. The Nucleus ‡ Usually the largest organelle. ‡ Location of DNA and of DNA replication ‡ Site where DNA is transcribed to RNA ‡ Contains the nucleolus, where ribosomes begin to be assembled from RNA and proteins.
  • 20. Eukaryotic Cells. The Nucleus ‡ Surrounded by two membranes that form the nuclear envelope. ‡ Nuclear pores control movement of molecules between nucleus and cytoplasm. ‡ In the nucleus, DNA combines with proteins to form chromatin in long, thin threads called chromosomes.
  • 21. Eukaryotic Cell. The endomembrane system ‡ The endomembrane system includes ‡ The nuclear envelope ‡ Endoplasmic reticulum ‡ Golgi apparatus ‡ Lysosomes. ‡ Tiny, membrane-surrounded vesicles shuttle substances between the various components, as well as to the plasma membrane.
  • 23. Endoplasmic Reticulum (ER) ‡ Network of interconnected membranes in the cytoplasm, with a large surface area ‡ The ER has two distinct regions: Smooth ER, which lacks ribosomes Rough ER, with ribosomes
  • 24. Smooth ER Rough ER Nuclear envelope ER lumen Cisternae Ribosomes Transitional ER Transport vesicle 200 nm Smooth ER Rough ER
  • 25. Endoplasmic Reticulum Smooth ER Rough ER Synthesizes Has bound lipids and ribosomes, secrete steroids glycoproteins Metabolizes Distributes carbohydrates transport Detoxifies vesicles, proteins poisons surrounded by Stores calcium membranes Glycogen Is a membrane degradation site factory for the cell
  • 26. The Golgi Apparatus ‡ The Golgi apparatus consists of flattened membranous sacs called cisternae ‡ ³Shipping and Receiving Center´ ‡ Functions of the Golgi apparatus: Modifies products of the ER Manufactures certain macromolecules (polysaccharides in plants) Sorts and packages materials into transport vesicles
  • 27. cis face (³receiving´ side of Golgi 0.1 µm apparatus) Cisternae trans face (³shipping´ side of Golgi TEM of Golgi apparatus apparatus)
  • 28. Lysosomes ‡ Primary lysosomes originate from the Golgi apparatus. ‡ contain digestive enzymes ‡ Site where macromolecules are hydrolyzed into monomers.
  • 29. Lysosomes Isolate Digestive Enzymes from the Cytoplasm
  • 30. Eukaryotic Cells. Mitrochondria ‡ In eukaryotes, molecules are first broken down in the cytosol. ‡ The partially digested molecules enter the mitochondria, here chemical energy is converted to energy-rich ATP. ‡ Cells that require a lot of energy often have more mitochondria.
  • 31. Eukaryotic Cells. Mitochondria ‡Two membranes: ‡ Outer membrane: porous ‡ Inner membrane: extensive folds called cristae, to increase surface area ‡The fluid-filled matrix inside the inner membrane contains enzymes, DNA, and ribosomes.
  • 32.
  • 33. Eukaryotic Cells. Plastids ‡ Plant and algae cells contain plastids that can differentiate into organelles² some are used for storage. ‡ Chloroplast contains chlorophyll and is the site of photosynthesis. ‡ Photosynthesis converts light energy into chemical energy.
  • 34.
  • 35. Eukaryotic Cells. Other organelles ‡ Specialized functions. ‡ Peroxisomes collect and break down toxic by-products of metabolism, such as H2O2, using specialized enzymes. ‡ Glyoxysomes, found only in plants, are where lipids are converted to carbohydrates for growth.
  • 36.
  • 37. Eukaryotic Cell. Vacuoles ‡Mainly in plants and fungi, functions: ‡Storage of waste products and toxic compounds ‡Structure for plant cells²water enters the vacuole by osmosis, creating turgor pressure
  • 38. Eukaryotic Cell. Vacuoles ‡Reproduction: vacuoles in flowers and fruits contain pigments whose colors attract pollinators and aid seed dispersal ‡Catabolism²digestive enzymes in seeds¶ vacuoles hydrolyze stored food for early growth
  • 39. The Cytoskeleton Provides Strength and Movement The cytoskeleton ‡ Supports and maintains cell shape ‡ Holds organelles in position ‡ Moves organelles ‡ Involved in cytoplasmic streaming ‡ Interacts with extracellular structures to anchor cell in place
  • 40. The Cytoskeleton Provides Strength and Movement Three components Microfilaments: ‡Help a cell or parts of a cell to move ‡Determine cell shape ‡Made from actin
  • 42. The Cytoskeleton Provides Strength and Movement Intermediate filaments: ‡ At least 50 different kinds ‡ Tough, ropelike protein assemblages, more permanent than other filaments ‡ Anchor cell structures in place ‡ Resist tension, maintain rigidity
  • 44. The Cytoskeleton Provides Strength and Movement Microtubules: The largest diameter components, two roles: ‡ Form rigid internal skeleton for some cells or regions ‡ Act as a framework for motor proteins to move structures in the cell
  • 46. The Cytoskeleton Provides Strength and Movement Microtubules line movable cell appendages. Cilia²short, usually many present, move with stiff power stroke and flexible recovery stroke Flagella²longer, usually one or two present, movement is snakelike
  • 47. Cilia
  • 48. Extracellular Structures Allow Cells to Communicate with the External Environment ‡ Extracellular structures are secreted to the outside of the plasma membrane. ‡ In eukaryotes, these structures have two components: ‡ A prominent fibrous macromolecule ‡ A gel-like medium with fibers embedded
  • 49. Extracellular Structures Allow Cells to Communicate with the External Environment ‡Plant cell wall²semi-rigid structure outside the plasma membrane ‡The fibrous component is the cellulose. ‡The gel-like matrix contains cross- linked polysaccharides and proteins.
  • 51. Cell wall Three major roles: ‡ Provides support for the cell and limits volume by remaining rigid ‡ Acts as a barrier to infection ‡ Contributes to form during growth and development
  • 54. Extracellular Structures in animal cells extracellular matrices in animal cells ‡ Hold cells together in tissues ‡ Contribute to physical properties of cartilage, skin, and other tissues ‡ Filter materials ‡ Orient cell movement during growth and repair
  • 55. Extracellular Structures ‡ Cell junctions specialized structures that protrude from adjacent cells and ³glue´ them together ‡ Tight junctions ‡ Desmosomes ‡ Gap junctions