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The Evolution of Populations
Chapter 23
BCOR 012
February 03 & 05, 2010
Outline: The Evolution of Populations (Chapter 23)
February 03, 2010
Introduction
Evolution is a population-level phenomenon
Linking Darwinian evolution and mendelian inheritance
The Modern Synthesis
Population Genetics
A population’s gene pool is defined by its allele frequencies
Hardy-Weinberg theorem
Manipulating the H-W equation
Example from health science – Cystic fibrosis
Assumptions of H-W
Microevolution
Causes
Drift
Bottleneck
Founder Effect
Natural Selection - the English Peppered Moth
Darwin’s arguments that life has evolved were accepted
more readily than his contention that natural selection was
the mechanism. This was partly because it was not known
how characteristics were passed from generation to generation.
Theodosius Dobzhansky
Ernst Mayr
G. Ledyard Stebbins
Sewell Wright
George Gaylord Simpson
Botany
Genetics
Paleontology
Systematics
Population
Genetics
The smallest unit that can evolve is the population ...
So what is a population?
A population is a set of individuals of the same species
that live close enough together to interbreed.
Gene pool: the total collection of alleles present in a popu-
lation is that population’s gene pool.
A population’s gene pool is defined by its allele frequencies.
Example:
• Flower color in Phlox is determined by
alternative alleles at the color locus.
• R is dominant to r, and results in red color. The
rr genotype yields white color.
• In one population, the frequency of R has been
determined to be 0.8, whereas the frequency of r
is 0.2. (Note that allele frequencies sum to 1.0)
Hardy-Weinberg Theorem
The Hardy-Weinberg theorem states that, in
a non-evolving population, allele and
genotype frequencies remain constant
through time.
If a population is in Hardy-Weinberg equilibrium, genotype
frequencies are given by:
p2 + 2pq + q2
where p is the frequency of one allele and q is the frequency of the other.
RR = .64 Rr = .32 rr = .04
So, if our Phlox population is in Hardy-
Weinberg equilibrium, what are the expected genotype
frequencies?
Q. In a population of 500 plants, how many will have the white
flowered phenotype?
A. 20 plants (0.04 X 500)
R = 0.8; r = 0.2
(p2) (q2)
(2pq)
A Real Example:
Frequency of cystic fibrosis phenotype in the caucasian
population = 1/2500. What proportion of the population
are carriers? (The CF allele is recessive.)
q2 = 1/2500 = 0.0004 q = √.0004 = 0.02 p = 0.98
2pq = 0.0392
or about 1 in 25 people
Free BCOR 012 tutoring will be available this FRIDAY,
2/5 (today) from 4 - 5:30pm in L/L A161 for drop-in tutoring.
The Sunday evening tutoring session on 2/7 is canceled
and will resume on Sunday, 2/14 at 7:30 pm.
In tufted titmice, crest height is controlled by a pair of alleles
at the crest locus. A tall crest is determined by the dominant
allele T. Individuals with the tt genotype have a short crest.
In a population of 100 titmice, 9 birds are short-crested.
What proportion of the tall-crested birds are homozygous at
the crest locus?
A. 91%
B. 49%
C. 21%
D. a little over half
E. 42%
Clicker Question
Assumptions of Hardy-Weinberg:
• No mutations
• Large population size
• No migration
• No natural selection (i.e., all members
survive and reproduce)
• Random mating
These conditions are almost never met in nature. Thus HW is
an ideal case.
Q. So how do populations evolve?
A. Through genetic drift and natural selection
Genetic drift can alter population allele frequencies.
Two situations can shrink a population to a
size small enough for genetic drift to operate:
• The bottleneck effect
• The founder effect
The bottleneck effect
The African cheetah population experienced one (perhaps two) bottlenecks.
Founder effect is the establishment of a new population by a few
original founders which carry only a small fraction of the total genetic
variation of the source population.
The Juan Fernandez Islands, located some 700 km west of Santiago in Chile.
There and nowhere else in the world exists Thyrsopteris elegans, a genus of
tree ferns endemic to the islands.
Q. What permits novel life forms like
Thyrsopteris elegans and Darwin’s finches to
evolve on islands?
A. Genetic change in small populations as a
result of founder effect, and adaptation to the
new environmental conditions.
Natural Selection as the Mechanism of Adaptive Evolution
Modes of Selection
Directional
Disruptive
Stabilizing
Sexual
Constraints on Natural Selection
Microevolution
Natural Selection - the English Peppered Moth
Outline: The Evolution of Populations (Chapter 23)
February 5
Five premises underlying
Darwin’s theory of Evolution by
Natural Selection:
• Variability: Populations of organisms are variable
• Heritability: Some of the variable traits are passed from
generation to generation
• Overproduction: More individuals are produced in a
population than will survive to reproduce
• Competition: Individuals compete for limited resources
Five premises underlying
Darwin’s theory:
• Differential Survival: Those individuals better
suited to their environment will leave more
descendents than less well suited individuals.
This is natural selection!
• Species
A species is a set of populations that are reproductively
isolated from other such population sets.
• Populations
A population is a set of conspecific individuals
living close enough together to interbreed. The
population is the smallest unit of evolution
• Individuals
Selection acts upon the individual
Individuals, Populations, and Species are
Hierarchically Related
Biston betularia,
the peppered moth
melanistic and normal forms
Allele frequencies change in response to natural selection
Reference: Kettlewell, H. B. D. 1961. The phenomenon of industrial melanism
in Lepidoptera. Ann. Rev. of Entomol. 6: 245 - 262.
The peppered moths satisfy the
conditions for natural selection:
• the population is variable
• color pattern is inherited
• the different forms have different fitnesses
Genetic Variation and Natural Selection
Variation is the raw material of evolution
Genetic variation occurs both within populations
and between populations
Shell color variation within a
population of marine snail
Plant height varies between yarrow
populations in the Sierra Nevada.
Sources of genetic variation:
I. Mutation, including:
• Point mutations
Sickle cell anemia results from a point mutation. Just one nucleotide
substitution in the hemoglobin gene resulted in an amino acid substitution
that causes the sickle cell disease.
• Chromosomal rearrangements
Humans have 46 chromosomes, whereas chimpanzee, gorilla, and orangutan
have 48. This major karyotypic difference was caused by the fusion of two
ancestral chromosomes to form human chromosome 2.
(Yunis and Prakash 1982)
II. Crossing Over, Independent Assortment,
and Sexual Recombination
Sources of genetic variation:
A closer look at natural selection
as the mechanism of adaptive
evolution
Two measures of fitness:
• Darwinian fitness - the contribution an
individual makes to the next generation
relative to the contribution of other
individuals.
• Relative fitness - the contribution a
particular genotype makes to the next
generation compared to the contributions of
alternative genotypes at the same locus.
Relative fitness, an example:
Consider our population of red- or white-flowered
Phlox. Let’s say the red-flowered plants are
visited preferentially by pollinating insects and so are
more successful at producing offspring. The white-
flowered plants, by contrast, leave only 75% of the
descendents that red-flowered plants do. We arbitrarily
assign a fitness value of 1.0 to the more successful geno-
types; thus the fitness of RR and Rr is 1.0 and that of rr
is 0.75.
Natural selection acts on the phenotype. As particular
variants are selected, favorable genotypes are maintained
or increased. The unit of selection is the individual.
Natural selection can be directional, diversifying, or stabilizing.
In this diagram, the white arrow indicates
natural selection working against the
lighter-colored phenotypes. Under
directional selection, the average fur color
darkens in the population in response.
Under diversifying
selection, both the lighter
and the darker phenotypes
are favored over the
medium ones. Thus both
lighter and darker coats
will increase in frequency.
Under stabilizing selection,
the average phenotype is
favored. More extreme variants
decrease in frequency in
response.
Which of the three
selection types would
result in black or white
snuzzles but no gray
ones?
A. Directional Selection
B. Stabilizing Selection
C. Diversifying Selection
D. None
E. All
Clicker Question
Sexual selection has led to the evolution of sexual dimorphism in
many animal species.
Constraints on Evolution:
• Natural selection can operate only on existing features; it
can’t fashion new ones de novo
• Adaptations are often compromises - what is an optimal
solution for one challenge is not necessarily optimal for
another
• Not all evolution is adaptive

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BCORchapter23.ppt

  • 1. The Evolution of Populations Chapter 23 BCOR 012 February 03 & 05, 2010
  • 2. Outline: The Evolution of Populations (Chapter 23) February 03, 2010 Introduction Evolution is a population-level phenomenon Linking Darwinian evolution and mendelian inheritance The Modern Synthesis Population Genetics A population’s gene pool is defined by its allele frequencies Hardy-Weinberg theorem Manipulating the H-W equation Example from health science – Cystic fibrosis Assumptions of H-W Microevolution Causes Drift Bottleneck Founder Effect Natural Selection - the English Peppered Moth
  • 3. Darwin’s arguments that life has evolved were accepted more readily than his contention that natural selection was the mechanism. This was partly because it was not known how characteristics were passed from generation to generation.
  • 4. Theodosius Dobzhansky Ernst Mayr G. Ledyard Stebbins Sewell Wright George Gaylord Simpson Botany Genetics Paleontology Systematics Population Genetics
  • 5. The smallest unit that can evolve is the population ... So what is a population? A population is a set of individuals of the same species that live close enough together to interbreed.
  • 6.
  • 7. Gene pool: the total collection of alleles present in a popu- lation is that population’s gene pool. A population’s gene pool is defined by its allele frequencies.
  • 8. Example: • Flower color in Phlox is determined by alternative alleles at the color locus. • R is dominant to r, and results in red color. The rr genotype yields white color. • In one population, the frequency of R has been determined to be 0.8, whereas the frequency of r is 0.2. (Note that allele frequencies sum to 1.0)
  • 9. Hardy-Weinberg Theorem The Hardy-Weinberg theorem states that, in a non-evolving population, allele and genotype frequencies remain constant through time.
  • 10. If a population is in Hardy-Weinberg equilibrium, genotype frequencies are given by: p2 + 2pq + q2 where p is the frequency of one allele and q is the frequency of the other.
  • 11. RR = .64 Rr = .32 rr = .04 So, if our Phlox population is in Hardy- Weinberg equilibrium, what are the expected genotype frequencies? Q. In a population of 500 plants, how many will have the white flowered phenotype? A. 20 plants (0.04 X 500) R = 0.8; r = 0.2 (p2) (q2) (2pq)
  • 12. A Real Example: Frequency of cystic fibrosis phenotype in the caucasian population = 1/2500. What proportion of the population are carriers? (The CF allele is recessive.) q2 = 1/2500 = 0.0004 q = √.0004 = 0.02 p = 0.98 2pq = 0.0392 or about 1 in 25 people
  • 13. Free BCOR 012 tutoring will be available this FRIDAY, 2/5 (today) from 4 - 5:30pm in L/L A161 for drop-in tutoring. The Sunday evening tutoring session on 2/7 is canceled and will resume on Sunday, 2/14 at 7:30 pm.
  • 14.
  • 15.
  • 16. In tufted titmice, crest height is controlled by a pair of alleles at the crest locus. A tall crest is determined by the dominant allele T. Individuals with the tt genotype have a short crest. In a population of 100 titmice, 9 birds are short-crested. What proportion of the tall-crested birds are homozygous at the crest locus? A. 91% B. 49% C. 21% D. a little over half E. 42% Clicker Question
  • 17. Assumptions of Hardy-Weinberg: • No mutations • Large population size • No migration • No natural selection (i.e., all members survive and reproduce) • Random mating These conditions are almost never met in nature. Thus HW is an ideal case.
  • 18. Q. So how do populations evolve? A. Through genetic drift and natural selection
  • 19. Genetic drift can alter population allele frequencies.
  • 20. Two situations can shrink a population to a size small enough for genetic drift to operate: • The bottleneck effect • The founder effect
  • 22. The African cheetah population experienced one (perhaps two) bottlenecks.
  • 23. Founder effect is the establishment of a new population by a few original founders which carry only a small fraction of the total genetic variation of the source population.
  • 24. The Juan Fernandez Islands, located some 700 km west of Santiago in Chile. There and nowhere else in the world exists Thyrsopteris elegans, a genus of tree ferns endemic to the islands.
  • 25. Q. What permits novel life forms like Thyrsopteris elegans and Darwin’s finches to evolve on islands? A. Genetic change in small populations as a result of founder effect, and adaptation to the new environmental conditions.
  • 26. Natural Selection as the Mechanism of Adaptive Evolution Modes of Selection Directional Disruptive Stabilizing Sexual Constraints on Natural Selection Microevolution Natural Selection - the English Peppered Moth Outline: The Evolution of Populations (Chapter 23) February 5
  • 27.
  • 28. Five premises underlying Darwin’s theory of Evolution by Natural Selection: • Variability: Populations of organisms are variable • Heritability: Some of the variable traits are passed from generation to generation • Overproduction: More individuals are produced in a population than will survive to reproduce • Competition: Individuals compete for limited resources
  • 29. Five premises underlying Darwin’s theory: • Differential Survival: Those individuals better suited to their environment will leave more descendents than less well suited individuals. This is natural selection!
  • 30. • Species A species is a set of populations that are reproductively isolated from other such population sets. • Populations A population is a set of conspecific individuals living close enough together to interbreed. The population is the smallest unit of evolution • Individuals Selection acts upon the individual Individuals, Populations, and Species are Hierarchically Related
  • 31. Biston betularia, the peppered moth melanistic and normal forms Allele frequencies change in response to natural selection Reference: Kettlewell, H. B. D. 1961. The phenomenon of industrial melanism in Lepidoptera. Ann. Rev. of Entomol. 6: 245 - 262.
  • 32. The peppered moths satisfy the conditions for natural selection: • the population is variable • color pattern is inherited • the different forms have different fitnesses
  • 33. Genetic Variation and Natural Selection Variation is the raw material of evolution
  • 34. Genetic variation occurs both within populations and between populations Shell color variation within a population of marine snail Plant height varies between yarrow populations in the Sierra Nevada.
  • 35. Sources of genetic variation: I. Mutation, including: • Point mutations Sickle cell anemia results from a point mutation. Just one nucleotide substitution in the hemoglobin gene resulted in an amino acid substitution that causes the sickle cell disease. • Chromosomal rearrangements Humans have 46 chromosomes, whereas chimpanzee, gorilla, and orangutan have 48. This major karyotypic difference was caused by the fusion of two ancestral chromosomes to form human chromosome 2. (Yunis and Prakash 1982)
  • 36. II. Crossing Over, Independent Assortment, and Sexual Recombination Sources of genetic variation:
  • 37. A closer look at natural selection as the mechanism of adaptive evolution
  • 38. Two measures of fitness: • Darwinian fitness - the contribution an individual makes to the next generation relative to the contribution of other individuals. • Relative fitness - the contribution a particular genotype makes to the next generation compared to the contributions of alternative genotypes at the same locus.
  • 39. Relative fitness, an example: Consider our population of red- or white-flowered Phlox. Let’s say the red-flowered plants are visited preferentially by pollinating insects and so are more successful at producing offspring. The white- flowered plants, by contrast, leave only 75% of the descendents that red-flowered plants do. We arbitrarily assign a fitness value of 1.0 to the more successful geno- types; thus the fitness of RR and Rr is 1.0 and that of rr is 0.75.
  • 40. Natural selection acts on the phenotype. As particular variants are selected, favorable genotypes are maintained or increased. The unit of selection is the individual.
  • 41. Natural selection can be directional, diversifying, or stabilizing.
  • 42. In this diagram, the white arrow indicates natural selection working against the lighter-colored phenotypes. Under directional selection, the average fur color darkens in the population in response.
  • 43. Under diversifying selection, both the lighter and the darker phenotypes are favored over the medium ones. Thus both lighter and darker coats will increase in frequency.
  • 44. Under stabilizing selection, the average phenotype is favored. More extreme variants decrease in frequency in response.
  • 45. Which of the three selection types would result in black or white snuzzles but no gray ones? A. Directional Selection B. Stabilizing Selection C. Diversifying Selection D. None E. All Clicker Question
  • 46. Sexual selection has led to the evolution of sexual dimorphism in many animal species.
  • 47. Constraints on Evolution: • Natural selection can operate only on existing features; it can’t fashion new ones de novo • Adaptations are often compromises - what is an optimal solution for one challenge is not necessarily optimal for another • Not all evolution is adaptive