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Comparison of Abilities Human eye Light microscope Transmission Electron Microscope
Levels of Organisation Living Organisms systems organs tissues cells Biomolecules Organic carbohydrates proteins lipids nucleic acids Inorganic Ions Water (inorganic)
Levels of Organisation Biomolecules Organic carbohydrates proteins lipids nucleic acids Inorganic Ions Water (inorganic) simple sugars amino acids fatty acids nucleotides glycerol
Cells!
The nature of the cell Intracellular aqueous  environment Extracellular aqueous  environment Cell boundary or  plasma membrane ,[object Object],[object Object]
What all cells need to do Make specific  Biomacromolecules Control and regulate chemical Reactions Produce energy to drive  Chemical reactions Take in small molecules Produce useful products  for export from the cell Receive and  respond to  chemical signals Remove waste  products Grow, reproduce and  pass on genetic information to the next generation of cells
Cell structure needs to meet the needs of molecules ,[object Object],[object Object],[object Object],[object Object]
Why size and shape matters ,[object Object],A B C Shape A B C L x W x H 1x1x1 10x10x 10 10x100x1 Surface Area (6a 2 ) 6 600 2200 Volume (a 3 ) 1 1000 1000 SA:V (SA/V) 6 0.6 2.2
So how do organisms deal with having cells with an insufficient SA:V to facilitate the transport of molecules? ,[object Object],[object Object],[object Object]
Animal Cells
Plant Cells
 
The functions of organelles: ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 
WATER
A little chemistry … Covalent bonding involves atoms joining to form molecules In order to form a stable molecule, each atom must share sufficient electrons in order to result in a full outer shell If an atom only has one shell of electrons, 2 is sufficient to fill it The second shell and onwards all require a minimum of 8 electrons in order to achieve stability
 
Oxygen has an atomic number of 8
 
Hydrogen has an atomic number of 1
A little chemistry … …  and a hydrogen atom contains 1 proton and 1 electron So an oxygen atom contains 8 protons and 8 electrons
A little chemistry … When oxygen and hydrogen bond, the hydrogen is stable, it has a full outer shell …  but the oxygen is still left short one electron
A little chemistry … This allows an additional hydrogen atom to bond with the oxygen …  thus creating a stable molecule
A little chemistry … Thus we achieve the structure of a water molecule: One oxygen atom bonded to two hydrogen atoms
How water interacts with other substances ,[object Object],[object Object]
pH ,[object Object],[object Object],[object Object],[object Object]
Water molecules are cohesive -> they form  hydrogen bonds Substances that dissolve in water are called  hydrophilic  or  polar Substances that are insoluble in water are called  hydrophobic  or  non-polar
Monomers: Polymers: Sugars Carbohydrates (Polysaccharides) Amino Acids Proteins Fatty acids & glycerol Lipids Nucleotides Nucleic Acids
From molecules to biomacromolecules ,[object Object],[object Object],[object Object]
Glucose, Fructose Sucrose, Lactose Starch, Glycogen & Cellulose
hexose shape pentose shape Mostly ends in  –ose C, H, O => organic Condensation reaction
[object Object],[object Object],The Condensation Reaction Monomer H - O O - H Monomer H - O O - H
[object Object],The Condensation Reaction Monomer H - O O - H Monomer H - O O - H H 2 O
[object Object],The Condensation Reaction Monomer H - O Monomer O O - H
[object Object],[object Object],[object Object],Hydrolysis Monomer H - O Monomer O O - H H 2 O
[object Object],[object Object],Hydrolysis Monomer H - O O - H Monomer H - O O - H H 2 O
 
Energy storage ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Lipids ,[object Object],[object Object],[object Object],[object Object],[object Object]
 
Triglycerides Phospholipids
How the monomers interact ,[object Object],[object Object],[object Object]
Other than phospholipids, which contain P, most others will only contain C, H & O
DNA: deoxyribonucleic acid RNA: ribonucleic acid
Nucleic acids contain C, H & O in addition to N & P SUGAR PHOSPHATE
DNA: Adenine (A) Thymine (T) Cytosine (C) Guanine (G) RNA: Adenine (A) Uracil (U) Cytosine (C) Guanine (G)
Differences between DNA & RNA DNA RNA A, C, G, T A, C, G, U Paired strands Single strand H +  at 2’ OH -  at 2’
Summary of animation ,[object Object],[object Object],[object Object],[object Object],[object Object]
 
3 groups: Amino group, Carboxyl group & R-group When joined together they form  peptide bonds Aside from the C, H, O & N in the base molecule, the R group may also contain S & P
Protein structure ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Primary structure: Secondary structure:
Tertiary structure: Quaternary structure:
Active vs inactive proteins ,[object Object],[object Object],[object Object],[object Object]
 
Biomacromolecule Type of bonding Carbohydrates Glycosidic bond Lipids Ester bond Nucleic acids Phosphodiester bond Proteins Peptide bond
 
 

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1 - The Chemical Nature of Cells

  • 1. Comparison of Abilities Human eye Light microscope Transmission Electron Microscope
  • 2. Levels of Organisation Living Organisms systems organs tissues cells Biomolecules Organic carbohydrates proteins lipids nucleic acids Inorganic Ions Water (inorganic)
  • 3. Levels of Organisation Biomolecules Organic carbohydrates proteins lipids nucleic acids Inorganic Ions Water (inorganic) simple sugars amino acids fatty acids nucleotides glycerol
  • 5.
  • 6. What all cells need to do Make specific Biomacromolecules Control and regulate chemical Reactions Produce energy to drive Chemical reactions Take in small molecules Produce useful products for export from the cell Receive and respond to chemical signals Remove waste products Grow, reproduce and pass on genetic information to the next generation of cells
  • 7.
  • 8.
  • 9.
  • 12.  
  • 13.
  • 14.  
  • 15. WATER
  • 16. A little chemistry … Covalent bonding involves atoms joining to form molecules In order to form a stable molecule, each atom must share sufficient electrons in order to result in a full outer shell If an atom only has one shell of electrons, 2 is sufficient to fill it The second shell and onwards all require a minimum of 8 electrons in order to achieve stability
  • 17.  
  • 18. Oxygen has an atomic number of 8
  • 19.  
  • 20. Hydrogen has an atomic number of 1
  • 21. A little chemistry … … and a hydrogen atom contains 1 proton and 1 electron So an oxygen atom contains 8 protons and 8 electrons
  • 22. A little chemistry … When oxygen and hydrogen bond, the hydrogen is stable, it has a full outer shell … but the oxygen is still left short one electron
  • 23. A little chemistry … This allows an additional hydrogen atom to bond with the oxygen … thus creating a stable molecule
  • 24. A little chemistry … Thus we achieve the structure of a water molecule: One oxygen atom bonded to two hydrogen atoms
  • 25.
  • 26.
  • 27. Water molecules are cohesive -> they form hydrogen bonds Substances that dissolve in water are called hydrophilic or polar Substances that are insoluble in water are called hydrophobic or non-polar
  • 28. Monomers: Polymers: Sugars Carbohydrates (Polysaccharides) Amino Acids Proteins Fatty acids & glycerol Lipids Nucleotides Nucleic Acids
  • 29.
  • 30. Glucose, Fructose Sucrose, Lactose Starch, Glycogen & Cellulose
  • 31. hexose shape pentose shape Mostly ends in –ose C, H, O => organic Condensation reaction
  • 32.
  • 33.
  • 34.
  • 35.
  • 36.
  • 37.  
  • 38.
  • 39.
  • 40.  
  • 42.
  • 43. Other than phospholipids, which contain P, most others will only contain C, H & O
  • 44. DNA: deoxyribonucleic acid RNA: ribonucleic acid
  • 45. Nucleic acids contain C, H & O in addition to N & P SUGAR PHOSPHATE
  • 46. DNA: Adenine (A) Thymine (T) Cytosine (C) Guanine (G) RNA: Adenine (A) Uracil (U) Cytosine (C) Guanine (G)
  • 47. Differences between DNA & RNA DNA RNA A, C, G, T A, C, G, U Paired strands Single strand H + at 2’ OH - at 2’
  • 48.
  • 49.  
  • 50. 3 groups: Amino group, Carboxyl group & R-group When joined together they form peptide bonds Aside from the C, H, O & N in the base molecule, the R group may also contain S & P
  • 51.
  • 54.
  • 55.  
  • 56. Biomacromolecule Type of bonding Carbohydrates Glycosidic bond Lipids Ester bond Nucleic acids Phosphodiester bond Proteins Peptide bond
  • 57.  
  • 58.